Commit 691009de authored by ext-calvo_p's avatar ext-calvo_p
Browse files

Merge branch '63-references-style' into 'master'

Resolve "References style"

Closes #63

See merge request OPAL/documentation/manual!131
parents b79b71dd 26315171
......@@ -1020,18 +1020,18 @@ image::figures/Benchmarks/opal-impact-1MHz-z.png[scaledwidth=10cm,width=50%]
=== References
anchor:bib.TraceMan[[{counter:bib-cnt}\]]
<<bib.TraceMan>> K. Crandall and D. Rusthoi, _Documentation for trace: an interactive beam-transport code_, tech. rep. (Los Alamos National Laboratory).
<<bib.TraceMan>> K. Crandall and D. Rusthoi, https://doi.org/10.2172/5937743[_Documentation for TRACE: An Interactive Beam-Transport Code_], Tech. Rep. LA—10235-MS, Los Alamos National Laboratory (1985).
anchor:bib.transport[[{counter:bib-cnt}\]]
<<bib.transport>> K. L. Brown et al., _TRANSPORT - A Computer Program for Designing Charged Particle Beam Transport Systems_, tech. rep. CERN 73-16, revised as CERN 80-4 (CERN, 1980).
<<bib.transport>> K. L. Brown et al., http://cds.cern.ch/record/133647[_TRANSPORT - A Computer Program for Designing Charged Particle Beam Transport Systems_], Tech. Rep. CERN 80-4, European Organization for Nuclear Research (1980).
anchor:bib.Transport_GUI[[{counter:bib-cnt}\]]
<<bib.Transport_GUI>> U. Rohrer, _PSI graphic transport framework based on a cern-slac-fermilab version by K.L. Brown et al_, tech. rep. (PSI).
<<bib.Transport_GUI>> U. Rohrer, http://aea.web.psi.ch/Urs_Rohrer/MyWeb/trans.htm[_PSI graphic transport framework based on a CERN-SLAC-FERMILAB version by K.L. Brown et al_].
anchor:bib.Tran_ex[[{counter:bib-cnt}\]]
<<bib.Tran_ex>> U. Rohrer, http://aea.web.psi.ch/Urs_Rohrer/MyWeb/moregifs/gantryb.gif.
anchor:bib.elegant[[{counter:bib-cnt}\]]
<<bib.elegant>> M. Borland, https://www1.aps.anl.gov/icms_files/lsnotes/files/APS_1418218.pdf[_Elegant: a flexible SDDS-compliant code for accelerator simulation_], tech. rep. LS-287 (Advanced Photon Source, Sept. 2000).
<<bib.elegant>> M. Borland, https://publications.anl.gov/anlpubs/2000/08/36940.pdf[_elegant: a flexible SDDS-compliant code for accelerator simulation_], Tech. Rep. LS-287, Advanced Photon Source (2000).
// EOF
\ No newline at end of file
// EOF
......@@ -1202,18 +1202,18 @@ coordinates. (<<sec.distribution.fromfiledisttype>>).
=== References
anchor:bib.JohoDist[[{counter:bib-cnt}\]]
<<bib.JohoDist>> W. Joho, Representation of beam ellipses for transport calculations, PSI Internal Report TM-11-14, https://intranet.psi.ch/pub/AUTHOR_WWW/ABE/TalksDE/TM-11-14.pdf.
<<bib.JohoDist>> W. Joho, https://indico.psi.ch/event/3484/attachments/5948/7502/TM-11-14.pdf[_Representation of beam ellipses for transport calculations_], PSI Internal Report TM-11-14, Paul Scherrer Institute (1980).
anchor:bib.laserPulseShaping[[{counter:bib-cnt}\]]
<<bib.laserPulseShaping>> J. G. Power and C. Jing, Temporal Laser Pulse Shaping for RF Photocathode Guns: The Cheap and Easy way using UV Birefringent Crystals, AIP Conference Proceedings 1086, 689 (2009); https://doi.org/10.1063/1.3080991
<<bib.laserPulseShaping>> J. G. Power and C. Jing, https://doi.org/10.1063/1.3080991[_Temporal Laser Pulse Shaping for RF Photocathode Guns: The Cheap and Easy way using UV Birefringent Crystals_], AIP Conf. Proc. 1086, 689 (2009).
anchor:bib.flo97[[{counter:bib-cnt}\]]
<<bib.flo97>> K. Flöttmann, _Note on the thermal emittance of electrons emitted by Cesium Telluride photo cathodes_, tech. rep. TESLA FEL-Report (DESY, Jan. 1997).
<<bib.flo97>> K. Flöttmann, _Note on the thermal emittance of electrons emitted by Cesium Telluride photo cathodes_, Tech. Rep. DESY-TESLA-FEL-97-01, Deutsches Elektronen-Synchrotron (1997).
anchor:bib.clen2000[[{counter:bib-cnt}\]]
<<bib.clen2000>> J. E. Clendenin et al., _Reduction of thermal emittance of rf guns_, Nucl. Instrum. Methods Phys. Res. Sect. A 455, 198201 (2000).
<<bib.clen2000>> J. E. Clendenin et al., https://www.sciencedirect.com/science/article/pii/S0168900200007312[_Reduction of thermal emittance of RF guns_], Nucl. Instrum. Methods A 455, 198 (2000).
anchor:bib.dowe2009[[{counter:bib-cnt}\]]
<<bib.dowe2009>> D. H. Dowell and J. F. Schmerge, _Quantum efficiency and thermal emittance of metal photocathodes_, Phys. Rev. ST Accel. Beams 12, 074201 (2009).
<<bib.dowe2009>> D. H. Dowell and J. F. Schmerge, https://journals.aps.org/prab/pdf/10.1103/PhysRevSTAB.12.074201[_Quantum efficiency and thermal emittance of metal photocathodes_], Phys. Rev. ST Accel. Beams 12, 074201 (2009).
// EOF
......@@ -2834,6 +2834,6 @@ anchor:bib.tait-bryan_elements[[{counter:bib-cnt}\]]
<<bib.tait-bryan_elements>> https://en.wikipedia.org/wiki/Euler_angles#Tait.E2.80.93Bryan_angles[_Tait-bryan angles_].
anchor:bib.enge_elements[[{counter:bib-cnt}\]]
<<bib.enge_elements>> J. E. Spencer and H. A. Enge, _Split-pole magnetic spectrograph for precision nuclear spectroscopy_, Nucl. Instrum. Methods 49, 181193 (1967).
<<bib.enge_elements>> J. E. Spencer and H. A. Enge, https://www.sciencedirect.com/science/article/abs/pii/0029554X67906842[_Split-pole magnetic spectrograph for precision nuclear spectroscopy_], Nucl. Instrum. Methods 49, 181 (1967).
// EOF
......@@ -1488,9 +1488,9 @@ latexmath:[N= (N_{z} + 1) \times (N_{y} + 1) \times (N_{x} + 1)].
=== References
anchor:bib.enge_fieldmaps[[{counter:bib-cnt}\]]
<<bib.enge_fieldmaps>> J. E. Spencer and H. A. Enge, _Split-pole magnetic spectrograph for precision nuclear spectroscopy_, Nucl. Instrum. Methods 49, 181–193 (1967).
<<bib.enge_fieldmaps>> J. E. Spencer and H. A. Enge, https://www.sciencedirect.com/science/article/abs/pii/0029554X67906842[_Split-pole magnetic spectrograph for precision nuclear spectroscopy_], Nucl. Instrum. Methods 49, 181 (1967).
anchor:bib.superfish[[{counter:bib-cnt}\]]
<<bib.superfish>> J. H. Billen and L. M. Young, _Poisson superfish_, tech. rep. LA-UR-96-1834 (Los Alamos National Laboratory, 2004).
<<bib.superfish>> J. H. Billen and L. M. Young, _Poisson superfish_, Tech. Rep. LA-UR-96-1834, Los Alamos National Laboratory (2004).
// EOF
......@@ -705,67 +705,66 @@ Stop;
=== References
anchor:bib.hockney[[{counter:bib-cnt}\]]
<<bib.hockney>> R. W. Hockney, _The potential calculation and some applications_, Methods Comput. Phys. 9, 136–210 (1970).
<<bib.hockney>> R. W. Hockney, _The potential calculation and some applications_, Methods Comput. Phys. 9, 136 (1970).
anchor:bib.eastwoodandbrownrigg[[{counter:bib-cnt}\]]
<<bib.eastwoodandbrownrigg>> J. W. Eastwood and D. R. K. Brownrigg, _Remarks on the solution of poisson’s equation for isolated systems_, J. Comput. Phys. 32, 24–38 (1979).
<<bib.eastwoodandbrownrigg>> J. W. Eastwood and D. R. K. Brownrigg, https://www.sciencedirect.com/science/article/pii/0021999179901396[_Remarks on the solution of poisson’s equation for isolated systems_], J. Comput. Phys. 32, 24 (1979).
anchor:bib.hockneyandeastwood[[{counter:bib-cnt}\]]
<<bib.hockneyandeastwood>> R. W. Hockney and J. W. Eastwood, _Computer simulation using particles_ (Taylor & Francis Group, 1988).
anchor:bib.qiangandryne[[{counter:bib-cnt}\]]
<<bib.qiangandryne>> J. Qiang and R. Ryne, _Parallel 3d poisson solver for a charged beam in a conducting pipe_, Comput. Phys. Commun. 138, 18–28 (2001).
<<bib.qiangandryne>> J. Qiang and R. Ryne, https://www.sciencedirect.com/science/article/pii/S0010465501001850[_Parallel 3D poisson solver for a charged beam in a conducting pipe_], Comput. Phys. Commun. 138, 18 (2001).
anchor:bib.qiangandgluckstern[[{counter:bib-cnt}\]]
<<bib.qiangandgluckstern>> J. Qiang and R. L. Gluckstern, _Three-dimensional poisson solver for a charged beam with large aspect ratio in a conducting pipe_, Comput. Phys. Commun. 160, 120–128 (2004).
<<bib.qiangandgluckstern>> J. Qiang and R. L. Gluckstern, https://www.sciencedirect.com/science/article/pii/S0010465504001298[_Three-dimensional poisson solver for a charged beam with large aspect ratio in a conducting pipe_], Comput. Phys. Commun. 160, 120 (2004).
anchor:bib.Adelmann2009p543[[{counter:bib-cnt}\]]
<<bib.Adelmann2009p543>> A. Adelmann, P. Arbenz, and Y. Ineichen, https://arxiv.org/abs/0907.4863[_A fast parallel poisson solver on irregular domains applied to beam dynamic simulations_], arXiv (2009).
<<bib.Adelmann2009p543>> A. Adelmann, P. Arbenz and Y. Ineichen, https://www.sciencedirect.com/science/article/pii/S0021999110001026[_A fast parallel poisson solver on irregular domains applied to beam dynamic simulations_], J. Comput. Phys. 229, 4554 (2010).
anchor:bib.qiang2005_fieldsolver[[{counter:bib-cnt}\]]
<<bib.qiang2005_fieldsolver>> J. Qiang et al., http://repositories.cdlib.org/lbnl/LBNL-59098[_A three-dimensional quasi-static model for high brightness beam dynamics simulation_], tech. rep. LBNL-59098 (LBNL).
<<bib.qiang2005_fieldsolver>> J. Qiang et al., http://repositories.cdlib.org/lbnl/LBNL-59098[_A three-dimensional quasi-static model for high brightness beam dynamics simulation_], Tech. Rep. LBNL-59098, Lawrence Berkeley National Laboratory (2005).
anchor:bib.qiang2006-1_fieldsolver[[{counter:bib-cnt}\]]
<<bib.qiang2006-1_fieldsolver>> J. Qiang et al., _Three-dimensional quasi-static model for high brightness beam dynamics simulation_, Phys. Rev. ST Accel. Beams 9 (2006).
<<bib.qiang2006-1_fieldsolver>> J. Qiang et al., https://journals.aps.org/prab/abstract/10.1103/PhysRevSTAB.9.044204[_Three-dimensional quasi-static model for high brightness beam dynamics simulation_], Phys. Rev. ST Accel. Beams 9, 044204 (2006).
anchor:bib.qiang2006-2_fieldsolver[[{counter:bib-cnt}\]]
<<bib.qiang2006-2_fieldsolver>> J. Qiang et al., _Erratum: three-dimensional quasi-static model for high brightness beam dynamics simulation_, Phys. Rev. ST Accel. Beams 10, 12990 (2007).
<<bib.qiang2006-2_fieldsolver>> J. Qiang et al., https://journals.aps.org/prab/abstract/10.1103/PhysRevSTAB.10.129901[_Erratum: three-dimensional quasi-static model for high brightness beam dynamics simulation_], Phys. Rev. ST Accel. Beams 10, 12990 (2007).
anchor:bib.amrex[[{counter:bib-cnt}\]]
<<bib.amrex>> W. Zhang, A. Almgren, et al., https://doi.org/10.21105/joss.01370[_AMReX: a framework for block-structured adaptive mesh refinement_], Journal of Open Source Software, 4(37):1370 (2019).
<<bib.amrex>> W. Zhang et al., https://doi.org/10.21105/joss.01370[_AMReX: a framework for block-structured adaptive mesh refinement_], J. Open Source Softw. 4, 1370 (2019).
anchor:bib.tpetra[[{counter:bib-cnt}\]]
<<bib.tpetra>> C. G. Baker and M. A. Heroux, https://doi.org/10.3233/SPR-2012-0349[_Tpetra, and the use of generic programming in scientific computing_], Scientific Programming, 20(2):115–128 (2012).
<<bib.tpetra>> C. G. Baker and M. A. Heroux, https://doi.org/10.3233/SPR-2012-0349[_Tpetra, and the use of generic programming in scientific computing_], Sci. Program. 20, 115 (2012).
anchor:bib.ifpack2[[{counter:bib-cnt}\]]
<<bib.ifpack2>> A. Prokopenko, C. M. Siefert, J. J. Hu, M. Hoemmen, and A. Klinvex, https://doi.org/10.2172/1259544[_Ifpack2 User's Guide 1.0_], Technical Report SAND2016-5338, Sandia National Labs (2016).
<<bib.ifpack2>> A. Prokopenko et al., https://doi.org/10.2172/1259544[_Ifpack2 User's Guide 1.0_], Tech. Rep. SAND2016-5338, Sandia National Laboratories (2016).
anchor:bib.amesos2-belos[[{counter:bib-cnt}\]]
<<bib.amesos2-belos>> E. Bavier, M. Hoemmen, S. Rajamanickam, and H. Thornquist, https://doi.org/10.3233/SPR-2012-0352[_Amesos2 and Belos: Direct and iterative solvers for large sparse linear systems_], Scientific Programming, 20(3):241–255 (2012).
<<bib.amesos2-belos>> E. Bavier et al., https://doi.org/10.3233/SPR-2012-0352[_Amesos2 and Belos: Direct and iterative solvers for large sparse linear systems_], Sci. Program. 20, 241 (2012).
anchor:bib.muelu[[{counter:bib-cnt}\]]
<<bib.muelu>> L. Berger-Vergiat, C. A. Glusa, J. J. Hu, M. Mayr, A. Prokopenko, C. M. Siefert, R. S. Tuminaro, and T. A. Wiesner, https://doi.org/10.2172/1491860[_MueLu User's Guide_], Technical Report SAND2019-0537, Sandia National Laboratories (2019).
<<bib.muelu>> L. Berger-Vergiat et al., https://doi.org/10.2172/1491860[_MueLu User's Guide_], Tech. Rep. SAND2019-0537, Sandia National Laboratories (2019).
anchor:bib.superlu[[{counter:bib-cnt}\]]
<<bib.superlu>> X. Li, J. Demmel, J. Gilbert, L. Grigori, M. Shao, and I. Yamazaki, http://crd.lbl.gov/~xiaoye/SuperLU[_SuperLU Users' Guide_], Technical Report LBNL-44289, Lawrence Berkeley National Laboratory (1999).
<<bib.superlu>> X. Li et al., http://crd.lbl.gov/~xiaoye/SuperLU[_SuperLU Users' Guide_], Tech. Rep. LBNL-44289, Lawrence Berkeley National Laboratory (1999).
anchor:bib.umfpack[[{counter:bib-cnt}\]]
<<bib.umfpack>> T. A. Davis, https://doi.org/10.1145/992200.992206[_Algorithm 832: UMFPACK V4.3—an Unsymmetric-Pattern Multifrontal Method_], ACM Trans. Math. Softw., 30(2):196–199 (2004).
<<bib.umfpack>> T. A. Davis, https://doi.org/10.1145/992200.992206[_Algorithm 832: UMFPACK V4.3—an Unsymmetric-Pattern Multifrontal Method_], ACM Trans. Math. Softw. 30, 196 (2004).
anchor:bib.pardiso[[{counter:bib-cnt}\]]
<<bib.pardiso>> O. Schenk and K. Gärtner, https://doi.org/10.1016/j.future.2003.07.011[_Solving unsymmetric sparse systems of linear equations with PARDISO_], Future Generation Computer Systems, 20(3):475–487 (2004).
<<bib.pardiso>> O. Schenk and K. Gärtner, https://doi.org/10.1016/j.future.2003.07.011[_Solving unsymmetric sparse systems of linear equations with PARDISO_], Future Gener. Comput. Syst. 20, 475 (2004).
anchor:bib.pardiso-2[[{counter:bib-cnt}\]]
<<bib.pardiso-2>> https://software.intel.com/en-us/onemkl-linux-developer-guide[_Developer Guide for Intel(R) oneAPI Math Kernel Library for Linux_], last updated: February 7, 2020.
anchor:bib.mumps[[{counter:bib-cnt}\]]
<<bib.mumps>> P. R. Amestoy, I. S. Duff, J.-Y. L'Excellent, and J. Koster, https://doi.org/10.1137/S0895479899358194[_A Fully Asynchronous Multifrontal Solver Using Distributed Dynamic Scheduling_], SIAM Journal on Matrix Analysis and Applications, 23(1):15–41 (2001).
<<bib.mumps>> P. R. Amestoy et al., https://doi.org/10.1137/S0895479899358194[_A Fully Asynchronous Multifrontal Solver Using Distributed Dynamic Scheduling_], SIAM J. Matrix Anal. Appl. 23, 15 (2001).
anchor:bib.lapack[[{counter:bib-cnt}\]]
<<bib.lapack>> E. Anderson, Z. Bai, C. Bischof, L. S. Blackford, J. Demmel, J. Dongarra, J. Du Croz, A. Greenbaum, S. Hammarling, A. McKenney, and D. Sorensen, https://doi.org/10.1137/1.9780898719604[_LAPACK Users' Guide_], SIAM, third edition, 1999,
ISBN 978-0-89871-447-0.
<<bib.lapack>> E. Anderson et al., https://doi.org/10.1137/1.9780898719604[_LAPACK Users' Guide_], 3rd edition (SIAM, 1999).
anchor:bib.amrsolver[[{counter:bib-cnt}\]]
<<bib.amrsolver>> M. Frey, A. Adelmann, and U. Locans, https://doi.org/10.1016/j.cpc.2019.106912[_On architecture and performance of adaptive mesh refinement in an electrostatics Particle-In-Cell code_], Computer Physics Communications, 247:106912 (2020).
<<bib.amrsolver>> M. Frey, A. Adelmann and U. Locans, https://doi.org/10.1016/j.cpc.2019.106912[_On architecture and performance of adaptive mesh refinement in an electrostatics Particle-In-Cell code_], Comput. Phys. Commun. 247, 106912 (2020).
// EOF
......@@ -80,16 +80,16 @@ image::figures/Gun/GunComp.png[scaledwidth=10cm,width=80%]
[[sec.introduction.output]]
=== Output
The phase space is stored in the H5hut file-format <<bib.howison2010_intro>> and can be analyzed
using e.g. H5root <<bib.schietinger_intro>>. The frequency of the data output (phase space and
some statistical quantities) can be controlled using the `OPTION`
statement see link:control#sec.control.option[Option Statement], with the flag `PSDUMPFREQ`. The file is
named like in input file but with the extension .h5.
The phase space is stored in the H5hut file-format <<bib.howison2010_intro>>
and can be analyzed using e.g. H5root <<bib.h5root_intro>>, <<bib.schietinger_intro>>.
The frequency of the data output (phase space and some statistical quantities)
can be controlled using the (see link:control#sec.control.option[Option Statement]),
with the flag `PSDUMPFREQ`. The file is named like in input file but with the extension _.h5_.
A SDDS compatible ASCII file with statistical beam parameters is written
to a file with extension .stat. The frequency with which this data is
written can be controlled with the `OPTION` statement
see link:control#sec.control.option[Option Statement] with the flag `STATDUMPFREQ`.
written can be controlled with the link:control#sec.control.option[`OPTION` statement]
with the flag `STATDUMPFREQ`.
For postprocessing we recommend to use the {link_pyOPALTools_wiki}/home[pyOPALTools]
Python package which contains many tools for pre- and postprocessing, and analysing and plotting output data.
......@@ -126,7 +126,7 @@ Julian Cummings,
Ji Qiang,
Robert Ryne
and Stefan Adam.
For the `H5root` visualization tool credits go to Thomas Schietinger.
For the H5root visualization tool credits go to Thomas Schietinger.
The following individuals are acknowledged for past contributions:
Christian Baumgarten,
......@@ -177,18 +177,21 @@ archivePrefix = {arXiv},
=== References
anchor:bib.classic[[{counter:bib-cnt}\]]
<<bib.classic>> F. C. Iselin, https://cds.cern.ch/record/311682/files/sl-96-061.pdf[_The classic project_], tech. rep. CERN/SL/96-061 (CERN, 1996).
<<bib.classic>> F. C. Iselin, https://cds.cern.ch/record/311682/files/sl-96-061.pdf[_The classic project_], Tech. Rep. CERN/SL/96-061, European Organization for Nuclear Research (1996).
anchor:bib.qiang2005_intro[[{counter:bib-cnt}\]]
<<bib.qiang2005_intro>> J. Qiang et al., http://repositories.cdlib.org/lbnl/LBNL-59098[_A three-dimensional quasi-static model for high brightness beam dynamics simulation_], tech. rep. LBNL-59098 (LBNL).
<<bib.qiang2005_intro>> J. Qiang et al., http://repositories.cdlib.org/lbnl/LBNL-59098[_A three-dimensional quasi-static model for high brightness beam dynamics simulation_], Tech. Rep. LBNL-59098, Lawrence Berkeley National Laboratory (2005).
anchor:bib.howison2010_intro[[{counter:bib-cnt}\]]
<<bib.howison2010_intro>> M. Howison et al., http://dx.doi.org/10.1109/CLUSTERWKSP.2010.5613098[_H5hut: A High-Performance I/O Library for Particle-based Simulations_], in IEEE International Conference on Cluster Computing Workshops and Posters (2010), pp. 1–8, 10 . 1109 / CLUSTERWKSP.2010.5613098.
<<bib.howison2010_intro>> M. Howison et al., http://dx.doi.org/10.1109/CLUSTERWKSP.2010.5613098[_H5hut: A High-Performance I/O Library for Particle-based Simulations_], in 2010 IEEE International Conference on Cluster Computing Workshops and Posters, vol. 1, pp. 1–8 (Heraklion, Crete, 2010).
anchor:bib.h5root_intro[[{counter:bib-cnt}\]]
<<bib.h5root_intro>> https://gitlab.psi.ch/OPAL/src/-/wikis/h5root[_H5root: a ROOT Based Graphical User Interface for H5hut_].
anchor:bib.schietinger_intro[[{counter:bib-cnt}\]]
<<bib.schietinger_intro>> T. Schietinger, https://gitlab.psi.ch/OPAL/src/wikis/h5root[_H5root_], 2006.
<<bib.schietinger_intro>> T. Schietinger, https://accelconf.web.cern.ch/ICAP2009/papers/thpsc049.pdf[_H5PartROOT - A visualization and post-processing tool for accelerator simulations_], in Proceedings of the 10th International Computational Accelerator Physics conference (ICAP09), pp. 343-346 (San Francisco, CA, USA, 2009).
anchor:bib.pooma[[{counter:bib-cnt}\]]
<<bib.pooma>> http://www.nongnu.org/freepooma/
<<bib.pooma>> R. Günther, http://www.nongnu.org/freepooma/[_Parallel Object-Oriented Methods and Applications_] (2005).
// EOF
......@@ -656,7 +656,7 @@ The intermediate phase space data of all particles and some interesting
parameters, including RMS envelop size, RMS emittance, external field,
time, energy, length of path, number of bunches and tracking step, are
stored in the H5hut file-format <<bib.howison2010>> and can be analyzed
using H5root <<bib.schietinger>>. The frequency of the data output can
using H5root <<bib.h5root>>, <<bib.schietinger>>. The frequency of the data output can
be set using the `PSDUMPFREQ` option of link:control#sec.control.option[`OPTION` statement].
The file is named _<input_file_name >.h5_.
This output can be switched on or off with the option `ENABLEHDF5`.
......@@ -741,12 +741,15 @@ All supplementary files can be found in {link_regtest_RingCyclotronMatched}[the
=== References
anchor:bib.gordon1985[[{counter:bib-cnt}\]]
<<bib.gordon1985>> M. M. Gordon and V. Taivassalo, https://ieeexplore.ieee.org/document/4333942[_Nonlinear Effects of Focusing Bars Used in the Extraction Systems of Superconducting Cyclotrons_], in IEEE Transactions on Nuclear Science (1985), 32, pp. 2447-2449.
<<bib.gordon1985>> M. M. Gordon and V. Taivassalo, https://ieeexplore.ieee.org/document/4333942[_Nonlinear Effects of Focusing Bars Used in the Extraction Systems of Superconducting Cyclotrons_], IEEE Trans. Nucl. Sci. 32, 2447 (1985)
anchor:bib.howison2010[[{counter:bib-cnt}\]]
<<bib.howison2010>> M. Howison et al., http://dx.doi.org/10.1109/CLUSTERWKSP.2010.5613098[_H5hut: A High-Performance I/O Library for Particle-based Simulations_], in IEEE International Conference on Cluster Computing Workshops and Posters (2010), pp. 1–8, 10 . 1109 / CLUSTERWKSP.2010.5613098.
<<bib.howison2010>> M. Howison et al., http://dx.doi.org/10.1109/CLUSTERWKSP.2010.5613098[_H5hut: A High-Performance I/O Library for Particle-based Simulations_], in 2010 IEEE International Conference on Cluster Computing Workshops and Posters, vol. 1, pp. 1–8 (Heraklion, Crete, 2010)
anchor:bib.h5root[[{counter:bib-cnt}\]]
<<bib.h5root>> https://gitlab.psi.ch/OPAL/src/-/wikis/h5root[_H5root: a ROOT Based Graphical User Interface for H5hut_]
anchor:bib.schietinger[[{counter:bib-cnt}\]]
<<bib.schietinger>> T. Schietinger, https://gitlab.psi.ch/OPAL/src/wikis/h5root[_H5root_], 2006.
<<bib.schietinger>> T. Schietinger, https://accelconf.web.cern.ch/ICAP2009/papers/thpsc049.pdf[_H5PartROOT - A visualization and post-processing tool for accelerator simulations_], in Proceedings of the 10th International Computational Accelerator Physics conference (ICAP09), pp. 343-346 (San Francisco, CA, USA, 2009)
// EOF
......@@ -259,6 +259,6 @@ The first number describes the coefficient and the following 6 the variables of
[[sec.opalmap.bibliography]]
=== References
anchor:bib.berz1999_opalmap[[{counter:bib-cnt}\]]
<<bib.berz1999_opalmap>> Martin Berz. Modern map methods in particle beam physics. eng. ISBN: 978-0-12-014750-2. San Diego: Academic Press, 1999.
<<bib.berz1999_opalmap>> M. Berz, _Modern map methods in particle beam physics_ (Academic Press, San Diego, 1999)
// EOF
\ No newline at end of file
// EOF
......@@ -1135,36 +1135,36 @@ replaced in ([eq.40]) to obtain a more explicit equation.
=== References
anchor:bib.qiang2005_opalt[[{counter:bib-cnt}\]]
<<bib.qiang2005_opalt>> J. Qiang et al., http://repositories.cdlib.org/lbnl/LBNL-59098[_A three-dimensional quasi-static model for high brightness beam dynamics simulation_], tech. rep. LBNL-59098 (LBNL).
<<bib.qiang2005_opalt>> J. Qiang et al., http://repositories.cdlib.org/lbnl/LBNL-59098[_A three-dimensional quasi-static model for high brightness beam dynamics simulation_], Tech. Rep. LBNL-59098, Lawrence Berkeley National Laboratory (2005).
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......@@ -541,25 +541,24 @@ image::figures/partmatter/spectandscatter.png[scaledwidth=12cm,width=80%]
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// EOF
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