GitLab

modified:   ippl/test/AMR/Solver.cpp
modified:   ippl/test/AMR/testGaussian.cpp

modified:   ippl/test/AMR/Solver.cpp
modified:   ippl/test/AMR/testGaussian.cpp

modified:   ippl/test/AMR/Distribution.cpp
modified:   ippl/test/AMR/testGaussian.cpp
modified:   ippl/test/AMR/testUnifSphere.cpp
modified:   ippl/test/AMR/testUnifSphereGrid.cpp

The uninitialized member variable "nLocalParticles_m" of the AmrPartBunch class caused problems for
multi-bunch simulations.

modified:   ippl/test/AMR/AmrPartBunch.cpp

modified:   ippl/test/AMR/testMultiBunch.cpp

deleted:    ippl/test/AMR/analyse.py
deleted:    ippl/test/AMR/vis_iter.py

New repostiory: git@gitlab.psi.ch:frey_m/AMR-Tools.git
		(or https://gitlab.psi.ch/frey_m/AMR-Tools.git)

deleted:    ippl/test/AMR/amr_plot_tools/field.py
deleted:    ippl/test/AMR/amr_plot_tools/tools.py
deleted:    ippl/test/AMR/amr_plot_tools/tracking_vis.py
deleted:    ippl/test/AMR/amr_plot_tools/visualize.py

               by cell volume.

modified:   ippl/test/AMR/helper_functions.h

- Add ability to zoom for yt plots
- Make field.py faster (?)

modified:   ippl/test/AMR/amr_plot_tools/field.py
modified:   ippl/test/AMR/amr_plot_tools/tools.py
modified:   ippl/test/AMR/amr_plot_tools/visualize.py

modified:   ippl/test/AMR/amr_plot_tools/field.py

modified:   ippl/test/AMR/amr_plot_tools/field.py

modified:   ippl/test/AMR/AmrDoxyfile
new file:   ippl/test/AMR/amr_plot_tools/field.py
modified:   ippl/test/AMR/amr_plot_tools/tools.py

- unsigned int -- signed int comparison error on Mac with
  old toolchain gcc/4.8.3

modified:   ippl/test/AMR/AmrPartBunch.h
modified:   ippl/test/AMR/helper_functions.h
modified:   ippl/test/AMR/writePlotFile.H

- slice plot of potential (normal to y)
- slice plot of potential (normal to x)

modified:   ippl/test/AMR/amr_plot_tools/visualize.py

modified:   ippl/test/AMR/testReal.cpp

modified:   ippl/test/AMR/testGaussian.cpp
modified:   ippl/test/AMR/testGridSolve.cpp
modified:   ippl/test/AMR/testMultiBunch.cpp
modified:   ippl/test/AMR/testReal.cpp
modified:   ippl/test/AMR/testUnifSphere.cpp
modified:   ippl/test/AMR/testUnifSphereGrid.cpp

modified:   ipplt/test/AMR/testReal.cpp

modified:   ippl/test/AMR/CMakeLists.txt
new file:   ippl/test/AMR/testMultiBunch.cpp
modified:   ippl/test/AMR/testReal.cpp

	       to section 11.3 in the OPAL manual.

modified:   ippl/test/AMR/CMakeLists.txt
modified:   ippl/test/AMR/Distribution.cpp
modified:   ippl/test/AMR/Distribution.h
new file:   ippl/test/AMR/toFile.cpp

modified:   CMakeLists.txt
modified:   H5Reader.cpp
modified:   H5Reader.h
modified:   iterative.cpp
modified:   testH5Read.cpp

- avoid compiler error: "multiple definition of ..."
  through inlining.

modified:   helper_functions.h

- add OpenMP also for Jacobi
- update usage message for test programs

modified:   iterative.cpp
modified:   testGaussian.cpp
modified:   testGridSolve.cpp
modified:   testReal.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

modified:   CMakeLists.txt
modified:   iterative.cpp

modified:   testReal.cpp

- allow to shift a particle distribution (needed for multibunch)
- generalize the phyiscal domain creation, each dimension can have
  a different extent (needed for multibunch)

modified:   Distribution.cpp
modified:   Distribution.h
modified:   helper_functions.h
modified:   testGaussian.cpp
modified:   testGridSolve.cpp
modified:   testReal.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

modified:   ippl/test/AMR/Distribution.cpp
modified:   ippl/test/AMR/Distribution.h
modified:   ippl/test/AMR/H5Reader.cpp
modified:   ippl/test/AMR/testReal.cpp

modified:   H5Reader.cpp
modified:   testReal.cpp

modified:   CMakeLists.txt
new file:   testReal.cpp

modified:   helper_functions.h
modified:   testGridSolve.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

- avoids code duplication

modified:   helper_functions.h
modified:   testGaussian.cpp
modified:   testGridSolve.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

- avoids duplicated code.

modified:   helper_functions.h
modified:   testGaussian.cpp
modified:   testGridSolve.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

modified:   helper_functions.h
modified:   testGaussian.cpp
modified:   testGridSolve.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

- fork name: opal-yt
- in order to checkout you need Mercurial. The
  repository is hosted by bitbucket.org
- clone by: hg clone https://Yavin_4@bitbucket.org/Yavin_4/opal-yt

modified:   amr_plot_tools/visualize.py
modified:   writePlotFile.H

	       This way we can avoid duplicated code.

new file:   helper_functions.h
modified:   testGaussian.cpp
modified:   testGridSolve.cpp
modified:   testUnifSphere.cpp
modified:   testUnifSphereGrid.cpp

- There were some code changes done that were
  not part of Tulin's code. It got now also removed.
  All rest of AMR should be reusable.

modified:   src/Algorithms/ParallelTTracker.cpp
modified:   src/Algorithms/ParallelTTracker.h
modified:   src/Structure/FieldSolver.cpp
modified:   src/Structure/FieldSolver.h
modified:   src/Track/TrackRun.cpp
modified:   src/Track/TrackRun.h