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Resolve "Loss files overwritten for collimators"

Closes #636

See merge request !474

Resolve "Reviewing physics behind particle matter interaction models"

Closes #634

See merge request !470

Resolve "Get correct output of VALUE, OPTION->AUTOPHASE"

Closes #635

See merge request !472

fix the unit test 'SolveFactoryTest' which failed due to the added out of...

Closes NightlyBuild#28

See merge request !471

fix the unit test 'SolveFactoryTest' which failed due to the added out of bounds check; additionally fixed the test 'VariableRFCavityFringeFieldTest.TestConstructor'

Resolve "Bethe-Bloch threshold"

Closes #83

See merge request !469

Resolve "Verifying particle matter interaction type"

Closes #631

See merge request !466

Resolve "Add -Wp,-D_GLIBCXX_ASSERTIONS to the build flags"

Closes #627

See merge request !464

replace &(someVector[0]) with someVector.data() where the vector written but only read and where we can't be sure that if it has elements

Resolve "Add command line option to return git hash"

Closes #630

See merge request !465

adding command line argument git-revision, cleaning up (a bit) parsing of command line arguemnts, fix output of compile options

Review cyclotron field map type

Closes #626

See merge request !462

Resolve "Cyclotron (COMET) does not read RFMAPFN's"

Closes #84

See merge request !461

Resolve "Unit Test TestSolvePolynomialQuadraticSmoothed disabled"

Closes #439

See merge request !459

Resolve "Check read of FROMFILE distribution"

Closes #622

See merge request !458

Resolve "Header of loss files"

Closes #620

See merge request !456

Fix the issue