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- use GSL for spline interpolation and integration
- use std::abs() instead of std::fabs()
- minor changes

Replace C sort algorithms with std::sort solutions.

reduce duplication with delegating constructor, remove unused and not fully implemented constructors

This reverts commit 69985bb1.

- additional OPAL input option: AMR

Modified files:

modified:   src/AbstractObjects/OpalData.cpp
modified:   src/AbstractObjects/OpalData.h
modified:   src/Algorithms/AutophaseTracker.h
modified:   src/Algorithms/BeamBeam3D.cpp
modified:   src/Algorithms/BeamBeam3D.h
modified:   src/Algorithms/CavityAutophaser.cpp
modified:   src/Algorithms/MPSplitIntegrator.cpp
modified:   src/Algorithms/MPSplitIntegrator.h
modified:   src/Algorithms/NilTracker.h
modified:   src/Algorithms/ParallelCyclotronTracker.cpp
modified:   src/Algorithms/ParallelCyclotronTracker.h
modified:   src/Algorithms/ParallelTTracker.cpp
modified:   src/Algorithms/ParallelTTracker.h
modified:   src/Algorithms/ThickTracker.cpp
modified:   src/Algorithms/ThickTracker.h
modified:   src/Algorithms/bet/EnvelopeBunch.cpp
modified:   src/Algorithms/bet/EnvelopeBunch.h
modified:   src/BasicActions/Option.cpp
modified:   src/Classic/AbsBeamline/Collimator.cpp
modified:   src/Classic/AbsBeamline/Collimator.h
modified:   src/Classic/AbsBeamline/Component.cpp
modified:   src/Classic/AbsBeamline/Component.h
modified:   src/Classic/AbsBeamline/Integrator.h
modified:   src/Classic/AbsBeamline/Probe.cpp
modified:   src/Classic/AbsBeamline/Probe.h
modified:   src/Classic/AbsBeamline/Ring.cpp
modified:   src/Classic/AbsBeamline/Ring.h
modified:   src/Classic/AbsBeamline/Septum.cpp
modified:   src/Classic/AbsBeamline/Septum.h
modified:   src/Classic/AbsBeamline/Source.cpp
modified:   src/Classic/AbsBeamline/Stripper.cpp
modified:   src/Classic/AbsBeamline/Stripper.h
modified:   src/Classic/Algorithms/AmrPartBunch.cpp
modified:   src/Classic/Algorithms/AmrPartBunch.h
modified:   src/Classic/Algorithms/MapIntegrator.cpp
modified:   src/Classic/Algorithms/MapIntegrator.h
modified:   src/Classic/Algorithms/OrbitTracker.cpp
modified:   src/Classic/Algorithms/PBunchDefs.h
modified:   src/Classic/Algorithms/PartBunch.cpp
modified:   src/Classic/Algorithms/PartBunch.h
modified:   src/Classic/Algorithms/PartBunchBase.h
modified:   src/Classic/Algorithms/PartBunchBase.hpp
modified:   src/Classic/Algorithms/ThinTracker.cpp
modified:   src/Classic/Algorithms/ThinTracker.h
modified:   src/Classic/Algorithms/Tracker.cpp
modified:   src/Classic/Algorithms/Tracker.h
modified:   src/Classic/Solvers/CSRIGFWakeFunction.cpp
modified:   src/Classic/Solvers/CSRIGFWakeFunction.hh
modified:   src/Classic/Solvers/CSRWakeFunction.cpp
modified:   src/Classic/Solvers/CSRWakeFunction.hh
modified:   src/Classic/Solvers/CollimatorPhysics.cpp
modified:   src/Classic/Solvers/CollimatorPhysics.hh
modified:   src/Classic/Solvers/GreenWakeFunction.cpp
modified:   src/Classic/Solvers/GreenWakeFunction.hh
modified:   src/Classic/Solvers/SurfacePhysicsHandler.hh
modified:   src/Classic/Solvers/WakeFunction.hh
modified:   src/Classic/Utilities/Options.cpp
modified:   src/Classic/Utilities/Options.h
modified:   src/Distribution/Distribution.cpp
modified:   src/Distribution/Distribution.h
modified:   src/Expressions/Expressions.cpp
modified:   src/Solvers/AmrPoissonSolver.h
modified:   src/Solvers/FFTBoxPoissonSolver.h
modified:   src/Solvers/FFTPoissonSolver.h
modified:   src/Solvers/MGPoissonSolver.h
modified:   src/Solvers/P3MPoissonSolver.cpp
modified:   src/Solvers/P3MPoissonSolver.h
modified:   src/Solvers/PoissonSolver.h
modified:   src/Structure/BoundaryGeometry.cpp
modified:   src/Structure/BoundaryGeometry.h
modified:   src/Structure/DataSink.cpp
modified:   src/Structure/DataSink.h
modified:   src/Structure/FieldSolver.cpp
modified:   src/Structure/FieldSolver.h
modified:   src/Structure/H5PartWrapper.h
modified:   src/Structure/H5PartWrapperForPC.cpp
modified:   src/Structure/H5PartWrapperForPC.h
modified:   src/Structure/H5PartWrapperForPS.cpp
modified:   src/Structure/H5PartWrapperForPS.h
modified:   src/Structure/H5PartWrapperForPT.cpp
modified:   src/Structure/H5PartWrapperForPT.h
modified:   src/Track/Track.cpp
modified:   src/Track/Track.h
modified:   src/Track/TrackRun.cpp
modified:   src/Track/TrackSave.cpp
modified:   src/Track/TrackStart.cpp

It's nicer than the "classic" namespace.

modified:   src/Algorithms/BeamBeam3D.cpp
modified:   src/Algorithms/BeamBeam3D.h
modified:   src/Algorithms/MPSplitIntegrator.cpp
modified:   src/Algorithms/MPSplitIntegrator.h
modified:   src/Algorithms/ThickTracker.cpp
modified:   src/Algorithms/bet/EnvelopeBunch.cpp
modified:   src/Algorithms/bet/EnvelopeBunch.h
modified:   src/Classic/AbsBeamline/Integrator.h
modified:   src/Classic/Algorithms/CMakeLists.txt
modified:   src/Classic/Algorithms/MapIntegrator.cpp
modified:   src/Classic/Algorithms/MapIntegrator.h
renamed:    src/Classic/Algorithms/Particle.cpp -> src/Classic/Algorithms/OpalParticle.cpp
renamed:    src/Classic/Algorithms/Particle.h -> src/Classic/Algorithms/OpalParticle.h
modified:   src/Classic/Algorithms/OrbitTracker.cpp
modified:   src/Classic/Algorithms/PartBunch.cpp
modified:   src/Classic/Algorithms/PartBunch.h
modified:   src/Classic/Algorithms/ThinTracker.cpp
modified:   src/Classic/Algorithms/Tracker.cpp
modified:   src/Classic/Algorithms/Tracker.h
modified:   src/Track/TrackSave.cpp
modified:   src/Track/TrackStart.cpp

modified:   src/Algorithms/BeamBeam3D.cpp
modified:   src/Algorithms/MPSplitIntegrator.cpp
modified:   src/Algorithms/MPSplitIntegrator.h
modified:   src/Algorithms/ThickTracker.cpp
modified:   src/Algorithms/bet/EnvelopeBunch.cpp
modified:   src/Algorithms/bet/EnvelopeBunch.h
modified:   src/Classic/AbsBeamline/Integrator.h
modified:   src/Classic/Algorithms/MapIntegrator.cpp
modified:   src/Classic/Algorithms/MapIntegrator.h
modified:   src/Classic/Algorithms/OrbitTracker.cpp
modified:   src/Classic/Algorithms/PartBunch.cpp
modified:   src/Classic/Algorithms/PartBunch.h
modified:   src/Classic/Algorithms/Particle.cpp
modified:   src/Classic/Algorithms/Particle.h
modified:   src/Classic/Algorithms/ThinTracker.cpp
modified:   src/Classic/Algorithms/TrackIntegrator.h
modified:   src/Classic/Algorithms/Tracker.cpp
modified:   src/Classic/Algorithms/Tracker.h
modified:   src/Track/TrackSave.cpp
modified:   src/Track/TrackStart.cpp

ParallelTTracker. Particle-Matter interaction doesn't work either at the moment.

I hope that I didn't create too much of a mess when merging!

    - starting to use smart pointers and other c++11 features (adapted flags cmake file)
    - adapting slice tracker to fit new t-t layout