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Cosmetics, Typos and a bugfix in calculateBeamParameters_cycl() where the energy would always be 0 and thus the emittance inf

xpang: fixed a bug in CSRWakefunction.cpp and added CSRIGFWakefunction.cpp for the integrated green function method

Injector2 runs are terminated normally now. MPI_File_write_at function was called after MPI_FINALIZE

Delete object of abstract class to finalize the run properly -Use smart reference-counted pointer class for dynamic memory management to avoid memory leak

Fixed some issues with new asignment operators in variable RF cavities that prevented gcc from compiling on merlin PLEASE DOUBLE-CHECK

1. Changed the way eKin_m is calculated in PartBunch to be consistent between P and E especially when restarting, 2. Removed some debug outputs.

Cosmetics, Typo, and an indexing error in Distribution.cpp that lead to (n_processors - 1) extra particles

Major Changes: 1. No more dumping or restarting in LOCAL frame. 2. OPAL-CYCL now recalculates reference* variables before dump and saves in H5 file. 3. OPAL correctly reads reference* values and calculates beta*gamma correctly from Ekin (was factor 1000 wrong before) Note: Transformation of bunch data into local frame must now be done in POSTPROCESSING -> upgrade H5root

Some refactoring and more comments for computeSelfFields_cycl(), fixed missing gamma factor for electric field -DW

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Need to discuss this:

     OPAL> * intersectTinyLineSegmentBoundary:  WARNING: pt=( 0.00017769 , -8.1542e-05 , 0.00086429 )  is outside the bbox  i=-7  j=176  k=0


The only boundary geometry MUST be at the first element !