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modified:   ippl/test/AMR/AmrPartBunch.cpp
modified:   ippl/test/AMR/AmrPartBunch.h

modified:   ippl/test/AMR/AmrPartBunch.cpp
modified:   ippl/test/AMR/AmrPartBunch.h

modified:   ippl/test/AMR/AmrPartBunch.cpp
modified:   ippl/test/AMR/AmrPartBunch.h

modified:   ippl/test/AMR/AmrOpal.cpp
modified:   ippl/test/AMR/AmrOpal.h
modified:   ippl/test/AMR/helper_functions.h
modified:   ippl/test/AMR/testGaussian.cpp

modified:   ippl/test/AMR/testUniform.cpp

modified:   ippl/test/AMR/CMakeLists.txt
new file:   ippl/test/AMR/testUniform.cpp

modified:   ippl/test/AMR/testGaussian.cpp

introduce ID1 and ID2 on the Distribution command allowing the user to place special particles see Issue#14

modified:   ippl/test/AMR/Solver.cpp
modified:   ippl/test/AMR/testGaussian.cpp

modified:   ippl/test/AMR/Solver.cpp
modified:   ippl/test/AMR/testGaussian.cpp

modified:   ippl/test/AMR/Distribution.cpp
modified:   ippl/test/AMR/testGaussian.cpp
modified:   ippl/test/AMR/testUnifSphere.cpp
modified:   ippl/test/AMR/testUnifSphereGrid.cpp

The uninitialized member variable "nLocalParticles_m" of the AmrPartBunch class caused problems for
multi-bunch simulations.

modified:   ippl/test/AMR/AmrPartBunch.cpp

modified:   ippl/test/AMR/testMultiBunch.cpp

deleted:    ippl/test/AMR/analyse.py
deleted:    ippl/test/AMR/vis_iter.py

New repostiory: git@gitlab.psi.ch:frey_m/AMR-Tools.git
		(or https://gitlab.psi.ch/frey_m/AMR-Tools.git)

deleted:    ippl/test/AMR/amr_plot_tools/field.py
deleted:    ippl/test/AMR/amr_plot_tools/tools.py
deleted:    ippl/test/AMR/amr_plot_tools/tracking_vis.py
deleted:    ippl/test/AMR/amr_plot_tools/visualize.py

               by cell volume.

modified:   ippl/test/AMR/helper_functions.h

- Add ability to zoom for yt plots
- Make field.py faster (?)

modified:   ippl/test/AMR/amr_plot_tools/field.py
modified:   ippl/test/AMR/amr_plot_tools/tools.py
modified:   ippl/test/AMR/amr_plot_tools/visualize.py

modified:   ippl/test/AMR/amr_plot_tools/field.py

modified:   ippl/test/AMR/amr_plot_tools/field.py

modified:   ippl/test/AMR/AmrDoxyfile
new file:   ippl/test/AMR/amr_plot_tools/field.py
modified:   ippl/test/AMR/amr_plot_tools/tools.py

- unsigned int -- signed int comparison error on Mac with
  old toolchain gcc/4.8.3

modified:   ippl/test/AMR/AmrPartBunch.h
modified:   ippl/test/AMR/helper_functions.h
modified:   ippl/test/AMR/writePlotFile.H

- slice plot of potential (normal to y)
- slice plot of potential (normal to x)

modified:   ippl/test/AMR/amr_plot_tools/visualize.py

modified:   ippl/test/AMR/testReal.cpp

modified:   ippl/test/AMR/testGaussian.cpp
modified:   ippl/test/AMR/testGridSolve.cpp
modified:   ippl/test/AMR/testMultiBunch.cpp
modified:   ippl/test/AMR/testReal.cpp
modified:   ippl/test/AMR/testUnifSphere.cpp
modified:   ippl/test/AMR/testUnifSphereGrid.cpp

modified:   ipplt/test/AMR/testReal.cpp

modified:   ippl/test/AMR/CMakeLists.txt
new file:   ippl/test/AMR/testMultiBunch.cpp
modified:   ippl/test/AMR/testReal.cpp

	       to section 11.3 in the OPAL manual.

modified:   ippl/test/AMR/CMakeLists.txt
modified:   ippl/test/AMR/Distribution.cpp
modified:   ippl/test/AMR/Distribution.h
new file:   ippl/test/AMR/toFile.cpp

modified:   CMakeLists.txt
modified:   H5Reader.cpp
modified:   H5Reader.h
modified:   iterative.cpp
modified:   testH5Read.cpp

- avoid compiler error: "multiple definition of ..."
  through inlining.

modified:   helper_functions.h