Segmentation fault - dks - SurfacePhysics Collimators
I got segmentation fault running this input file PROSCAN-G3-230.in. It includes SurfacePhysics on 3 consecutive collimators.
The error message:
ParallelTTracker {0}> Coll/Deg statistics: bunch to material 2 redifused 0 stopped 1
[opalrunner:20589] *** Process received signal ***
[opalrunner:20589] Signal: Segmentation fault (11)
[opalrunner:20589] Signal code: Address not mapped (1)
[opalrunner:20589] Failing at address: 0x1b70f000
[opalrunner:20589] [ 0] /lib64/libc.so.6[0x32e9632660]
[opalrunner:20589] [ 1] opal(_ZN14ParticleAttribI6VektorIdLj3EEE7destroyERKSt6vectorISt4pairImmESaIS5_EEb+0x1f0)[0xe531d0]
[opalrunner:20589] [ 2] opal(_ZN16IpplParticleBaseI21ParticleSpatialLayoutIdLj3E16UniformCartesianILj3EdE24BoxParticleCachingPolicyIdLj3ES2_EEE14performDestroyEv+0xc2)[0xdac9e2]
[opalrunner:20589] [ 3] opal(_ZN21ParticleSpatialLayoutIdLj3E16UniformCartesianILj3EdE24BoxParticleCachingPolicyIdLj3ES1_EE6updateER16IpplParticleBaseIS4_EPK14ParticleAttribIcE+0x45)[0xdae095]
[opalrunner:20589] [ 4] opal(_ZN16IpplParticleBaseI21ParticleSpatialLayoutIdLj3E16UniformCartesianILj3EdE24BoxParticleCachingPolicyIdLj3ES2_EEE6updateEv+0x1a)[0xdae60a]
[opalrunner:20589] [ 5] opal(_ZN9PartBunch6boundpEv+0x406)[0xe225e6]
[opalrunner:20589] [ 6] opal(_ZN16ParallelTTracker21computeExternalFieldsEv+0xf19)[0x107ec79]
[opalrunner:20589] [ 7] opal(_ZN16ParallelTTracker21executeDefaultTrackerEv+0x637)[0x1084b77]
[opalrunner:20589] [ 8] opal(_ZN16ParallelTTracker7executeEv+0x1f)[0x108566f]
[opalrunner:20589] [ 9] opal(_ZN8TrackRun7executeEv+0x751)[0x104c4b1]
[opalrunner:20589] [10] opal(_ZNK10OpalParser7executeEP6ObjectRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x35)[0xcb57e5]
[opalrunner:20589] [11] opal(_ZNK10OpalParser11parseActionER9Statement+0x143)[0xcb9803]
[opalrunner:20589] [12] opal(_ZNK10OpalParser5parseER9Statement+0x186)[0xcb9196]
[opalrunner:20589] [13] opal(_ZNK10OpalParser3runEv+0x2c)[0xcba7ec]
[opalrunner:20589] [14] opal(_ZN8TrackCmd7executeEv+0x343)[0xd6ccc3]
[opalrunner:20589] [15] opal(_ZNK10OpalParser7executeEP6ObjectRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE+0x35)[0xcb57e5]
[opalrunner:20589] [16] opal(_ZNK10OpalParser11parseActionER9Statement+0x143)[0xcb9803]
[opalrunner:20589] [17] opal(_ZNK10OpalParser5parseER9Statement+0x186)[0xcb9196]
[opalrunner:20589] [18] opal(_ZNK10OpalParser3runEv+0x2c)[0xcba7ec]
[opalrunner:20589] [19] opal(_ZNK10OpalParser3runEP11TokenStream+0x6a)[0xcb9cea]
[opalrunner:20589] [20] opal(main+0x8e8)[0xc48658]
[opalrunner:20589] [21] /lib64/libc.so.6(__libc_start_main+0xfd)[0x32e961ed1d]
[opalrunner:20589] [22] opal[0xc3fab5]
[opalrunner:20589] *** End of error message ***
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mpirun noticed that process rank 1 with PID 20589 on node opalrunner exited on signal 11 (Segmentation fault).
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I tried with two different time steps (1 ps and 5 ps) and I got the same error. The same file runs up to end without the option --use-dks.
Run configuration: opalrunner with 8 cores Modules load:
Currently Loaded Modulefiles:
1) gcc/5.4.0 3) OPAL/1.6.0rc3 5) root/6.08.02 7) Tcl/8.6.4 9) Python/2.7.12 11) gsl/2.2.1
2) openmpi/1.10.4 4) OPAL/1.6 6) openssl/1.0.2j 8) Tk/8.6.4 10) boost/1.62.0 12) H5root/1.3.2rc4-1