From c0fbe93bbe876ba2bdcaffa413bd61acd7998ae1 Mon Sep 17 00:00:00 2001
From: Jochem Snuverink <jochem.snuverink@psi.ch>
Date: Fri, 9 Mar 2018 22:08:09 +0100
Subject: [PATCH] Revert "res. confl"

This reverts commit 69985bb101a6a42f3b70045638ccbd1731a48de7.
---
 .gitattributes                                |   0
 .gitignore                                    |   0
 CMakeLists.txt                                |   0
 CMakeModules/FindGSL.cmake                    |   0
 CMakeModules/FindGTest.cmake                  |   0
 CMakeModules/FindH5Hut.cmake                  |   0
 CMakeModules/FindHDF5.cmake                   |   0
 CMakeModules/FindSDDS.cmake                   |   0
 Doxyfile                                      |   0
 README.md                                     |   0
 cmake/OPALConfig.cmake.in                     |   0
 doc/randomnotes.txt                           |   0
 doc/refcard/opal-ref-card-bibliography.bib    |   0
 doc/refcard/opal-refcard.tex                  |   0
 ippl/CMakeLists.txt                           |   0
 ippl/Doxyfile                                 |   0
 ippl/INSTALL                                  |   0
 ippl/LICENSE                                  |   0
 ippl/README                                   |   0
 ippl/cmake/IPPLConfig.cmake.in                |   0
 ippl/doc/tex/dingbat.sty                      |   0
 ippl/doc/tex/error_time.pdf                   | Bin
 ippl/doc/tex/figures/psi_logo_wide.eps        |   0
 ippl/doc/tex/figures/psi_logo_wide.pdf        | Bin
 ippl/doc/tex/greens.pdf                       | Bin
 ippl/doc/tex/greens.ps                        |   0
 ippl/doc/tex/html.sty                         |   0
 ippl/doc/tex/introduction.tex                 |   0
 ippl/doc/tex/ippl_centering_ref.tex           |   0
 ippl/doc/tex/ippl_fft.tex                     |   0
 ippl/doc/tex/ippl_field_ref.tex               |   0
 ippl/doc/tex/ippl_fieldlayout_ref.tex         |   0
 ippl/doc/tex/ippl_fields.tex                  |   0
 ippl/doc/tex/ippl_index_ref.tex               |   0
 ippl/doc/tex/ippl_mesh_ref.tex                |   0
 ippl/doc/tex/ippl_particles.tex               |   0
 ippl/doc/tex/ippl_setup.tex                   |   0
 ippl/doc/tex/ippl_user_guide.tex              |   0
 ippl/doc/tex/pdfdraftcopy.sty                 |   0
 ippl/src/.gitignore                           |   0
 ippl/src/AmrParticle/AmrParticleBase.h        |   0
 ippl/src/AmrParticle/AmrParticleBase.hpp      |   0
 .../src/AmrParticle/AmrParticleLevelCounter.h |   0
 ippl/src/AmrParticle/CMakeLists.txt           |   0
 ippl/src/AmrParticle/ParticleAmrLayout.h      |   0
 ippl/src/AppTypes/AntiSymTenzor.h             |   0
 ippl/src/AppTypes/AppTypeTraits.h             |   0
 ippl/src/AppTypes/CMakeLists.txt              |   0
 ippl/src/AppTypes/GenVektor.h                 |   0
 ippl/src/AppTypes/SymTenzor.h                 |   0
 ippl/src/AppTypes/TSVMeta.h                   |   0
 ippl/src/AppTypes/TSVMetaAssign.h             |   0
 ippl/src/AppTypes/TSVMetaBinary.h             |   0
 ippl/src/AppTypes/TSVMetaCompare.h            |   0
 ippl/src/AppTypes/TSVMetaCross.h              |   0
 ippl/src/AppTypes/TSVMetaDot.h                |   0
 ippl/src/AppTypes/TSVMetaDotDot.h             |   0
 ippl/src/AppTypes/TSVMetaUnary.h              |   0
 ippl/src/AppTypes/Tenzor.h                    |   0
 ippl/src/AppTypes/Vektor.h                    |   0
 ippl/src/AppTypes/dcomplex.h                  |   0
 ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp   |   0
 ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp   |   0
 ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp   |   0
 ippl/src/AppTypes/inst/SymTenzor_1D.cpp       |   0
 ippl/src/AppTypes/inst/SymTenzor_2D.cpp       |   0
 ippl/src/AppTypes/inst/SymTenzor_3D.cpp       |   0
 ippl/src/AppTypes/inst/Tenzor_1D.cpp          |   0
 ippl/src/AppTypes/inst/Tenzor_2D.cpp          |   0
 ippl/src/AppTypes/inst/Tenzor_3D.cpp          |   0
 ippl/src/AppTypes/inst/Vektor_1D.cpp          |   0
 ippl/src/AppTypes/inst/Vektor_2D.cpp          |   0
 ippl/src/AppTypes/inst/Vektor_3D.cpp          |   0
 ippl/src/CMakeLists.txt                       |   0
 ippl/src/DataSource/CMakeLists.txt            |   0
 ippl/src/DataSource/DataConnect.cpp           |   0
 ippl/src/DataSource/DataConnect.h             |   0
 ippl/src/DataSource/DataConnectCreator.cpp    |   0
 ippl/src/DataSource/DataConnectCreator.h      |   0
 ippl/src/DataSource/DataSource.cpp            |   0
 ippl/src/DataSource/DataSource.h              |   0
 ippl/src/DataSource/DataSourceObject.h        |   0
 ippl/src/DataSource/FieldDataSource.h         |   0
 ippl/src/DataSource/FieldDataSource.hpp       |   0
 ippl/src/DataSource/FileDataConnect.h         |   0
 ippl/src/DataSource/FileFieldDataSource.h     |   0
 ippl/src/DataSource/FileFieldDataSource.hpp   |   0
 .../src/DataSource/FilePtclAttribDataSource.h |   0
 .../DataSource/FilePtclAttribDataSource.hpp   |   0
 ippl/src/DataSource/FilePtclBaseDataSource.h  |   0
 .../src/DataSource/FilePtclBaseDataSource.hpp |   0
 ippl/src/DataSource/MakeDataSource.h          |   0
 ippl/src/DataSource/MakeDataSource.hpp        |   0
 ippl/src/DataSource/PtclAttribDataSource.cpp  |   0
 ippl/src/DataSource/PtclAttribDataSource.h    |   0
 ippl/src/DataSource/PtclBaseDataSource.cpp    |   0
 ippl/src/DataSource/PtclBaseDataSource.h      |   0
 ippl/src/DataSource/ScalarDataSource.h        |   0
 ippl/src/DataSource/ScalarDataSource.hpp      |   0
 ippl/src/DataSource/StringDataSource.h        |   0
 ippl/src/DataSource/StringDataSource.hpp      |   0
 .../inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp |   0
 .../inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp |   0
 .../inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp |   0
 .../inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp |   0
 .../inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp |   0
 .../inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp |   0
 .../inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp |   0
 .../inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp |   0
 .../inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp |   0
 .../inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp |   0
 .../inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp |   0
 .../inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp |   0
 .../inst/FileFieldDS_Cart_Cell_1D.cpp         |   0
 .../inst/FileFieldDS_Cart_Cell_2D.cpp         |   0
 .../inst/FileFieldDS_Cart_Cell_3D.cpp         |   0
 .../inst/FileFieldDS_Cart_Vert_1D.cpp         |   0
 .../inst/FileFieldDS_Cart_Vert_2D.cpp         |   0
 .../inst/FileFieldDS_Cart_Vert_3D.cpp         |   0
 .../inst/FileFieldDS_Unif_Cell_1D.cpp         |   0
 .../inst/FileFieldDS_Unif_Cell_2D.cpp         |   0
 .../inst/FileFieldDS_Unif_Cell_3D.cpp         |   0
 .../inst/FileFieldDS_Unif_Vert_1D.cpp         |   0
 .../inst/FileFieldDS_Unif_Vert_2D.cpp         |   0
 .../inst/FileFieldDS_Unif_Vert_3D.cpp         |   0
 .../inst/FileParAttribAppTypesDS_1D.cpp       |   0
 .../inst/FileParAttribAppTypesDS_2D.cpp       |   0
 .../inst/FileParAttribAppTypesDS_3D.cpp       |   0
 .../DataSource/inst/FileParAttribDS_all.cpp   |   0
 .../inst/FileParBaseInteractDS_Cart_1D.cpp    |   0
 .../inst/FileParBaseInteractDS_Cart_2D.cpp    |   0
 .../inst/FileParBaseInteractDS_Cart_3D.cpp    |   0
 .../inst/FileParBaseInteractDS_Unif_1D.cpp    |   0
 .../inst/FileParBaseInteractDS_Unif_2D.cpp    |   0
 .../inst/FileParBaseInteractDS_Unif_3D.cpp    |   0
 .../inst/FileParBaseSpatialDS_Cart_1D.cpp     |   0
 .../inst/FileParBaseSpatialDS_Cart_2D.cpp     |   0
 .../inst/FileParBaseSpatialDS_Cart_3D.cpp     |   0
 .../inst/FileParBaseSpatialDS_Unif_1D.cpp     |   0
 .../inst/FileParBaseSpatialDS_Unif_2D.cpp     |   0
 .../inst/FileParBaseSpatialDS_Unif_3D.cpp     |   0
 .../inst/FileParBaseUniformDS_1D.cpp          |   0
 .../inst/FileParBaseUniformDS_2D.cpp          |   0
 .../inst/FileParBaseUniformDS_3D.cpp          |   0
 ippl/src/DomainMap/CMakeLists.txt             |   0
 ippl/src/DomainMap/DomainMap.h                |   0
 ippl/src/DomainMap/DomainMap.hpp              |   0
 ippl/src/FFT/CMakeLists.txt                   |   0
 ippl/src/FFT/FFT.h                            |   0
 ippl/src/FFT/FFT.hpp                          |   0
 ippl/src/FFT/FFTBase.h                        |   0
 ippl/src/FFT/FFTBase.hpp                      |   0
 ippl/src/FFT/SCSL_FFT.F                       |   0
 ippl/src/FFT/SCSL_FFT.h                       |   0
 ippl/src/FFT/c_utils.c                        |   0
 ippl/src/FFT/c_utils.h                        |   0
 ippl/src/FFT/f2c.h                            |   0
 ippl/src/FFT/fftpack.F                        |   0
 ippl/src/FFT/fftpack.cpp                      |   0
 ippl/src/FFT/fftpack.h                        |   0
 ippl/src/FFT/fftpack_FFT.h                    |   0
 ippl/src/FFT/fftpack_inc.c                    |   0
 ippl/src/Field/Assign.h                       |   0
 ippl/src/Field/Assign.hpp                     |   0
 ippl/src/Field/AssignDefs.h                   |   0
 ippl/src/Field/AssignGeneralBF.hpp            |   0
 ippl/src/Field/AssignGeneralIBF.hpp           |   0
 ippl/src/Field/AssignTags.h                   |   0
 ippl/src/Field/BCond.h                        |   0
 ippl/src/Field/BCond.hpp                      |   0
 ippl/src/Field/BareField.h                    |   0
 ippl/src/Field/BareField.hpp                  |   0
 ippl/src/Field/BareFieldIterator.h            |   0
 ippl/src/Field/BrickExpression.h              |   0
 ippl/src/Field/BrickExpression.hpp            |   0
 ippl/src/Field/BrickIterator.h                |   0
 ippl/src/Field/BrickIterator.hpp              |   0
 ippl/src/Field/CMakeLists.txt                 |   0
 ippl/src/Field/CompressedBrickIterator.h      |   0
 ippl/src/Field/CompressedBrickIterator.hpp    |   0
 ippl/src/Field/Field.h                        |   0
 ippl/src/Field/Field.hpp                      |   0
 ippl/src/Field/FieldLoc.h                     |   0
 ippl/src/Field/FieldSpec.h                    |   0
 ippl/src/Field/GuardCellSizes.h               |   0
 ippl/src/Field/GuardCellSizes.hpp             |   0
 ippl/src/Field/IndexedBareField.h             |   0
 ippl/src/Field/IndexedBareField.hpp           |   0
 ippl/src/Field/IndexedField.h                 |   0
 ippl/src/Field/LField.h                       |   0
 ippl/src/Field/LField.hpp                     |   0
 ippl/src/Field/ReductionLoc.h                 |   0
 ippl/src/Field/ReductionLoc.hpp               |   0
 .../Field/inst/BCondAppTypes_Cart_Cell_1D.cpp |   0
 .../Field/inst/BCondAppTypes_Cart_Cell_2D.cpp |   0
 .../Field/inst/BCondAppTypes_Cart_Cell_3D.cpp |   0
 .../Field/inst/BCondAppTypes_Cart_Vert_1D.cpp |   0
 .../Field/inst/BCondAppTypes_Cart_Vert_2D.cpp |   0
 .../Field/inst/BCondAppTypes_Cart_Vert_3D.cpp |   0
 .../Field/inst/BCondAppTypes_Unif_Cell_1D.cpp |   0
 .../Field/inst/BCondAppTypes_Unif_Cell_2D.cpp |   0
 .../Field/inst/BCondAppTypes_Unif_Cell_3D.cpp |   0
 .../Field/inst/BCondAppTypes_Unif_Vert_1D.cpp |   0
 .../Field/inst/BCondAppTypes_Unif_Vert_2D.cpp |   0
 .../Field/inst/BCondAppTypes_Unif_Vert_3D.cpp |   0
 ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp    |   0
 ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp    |   0
 ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp    |   0
 ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp    |   0
 ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp    |   0
 ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp    |   0
 ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp    |   0
 ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp    |   0
 ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp    |   0
 ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp    |   0
 ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp    |   0
 ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp    |   0
 ippl/src/Field/inst/BareFieldAppTypes_1D.cpp  |   0
 ippl/src/Field/inst/BareFieldAppTypes_2D.cpp  |   0
 ippl/src/Field/inst/BareFieldAppTypes_3D.cpp  |   0
 ippl/src/Field/inst/BareField_cmplx_1D.cpp    |   0
 ippl/src/Field/inst/BareField_cmplx_2D.cpp    |   0
 ippl/src/Field/inst/BareField_cmplx_3D.cpp    |   0
 ippl/src/Field/inst/BareField_fp_1D.cpp       |   0
 ippl/src/Field/inst/BareField_fp_2D.cpp       |   0
 ippl/src/Field/inst/BareField_fp_3D.cpp       |   0
 ippl/src/Field/inst/BareField_int_1D.cpp      |   0
 ippl/src/Field/inst/BareField_int_2D.cpp      |   0
 ippl/src/Field/inst/BareField_int_3D.cpp      |   0
 .../Field/inst/FieldAppTypes_Cart_Cell_1D.cpp |   0
 .../Field/inst/FieldAppTypes_Cart_Cell_2D.cpp |   0
 .../Field/inst/FieldAppTypes_Cart_Cell_3D.cpp |   0
 .../Field/inst/FieldAppTypes_Cart_Vert_1D.cpp |   0
 .../Field/inst/FieldAppTypes_Cart_Vert_2D.cpp |   0
 .../Field/inst/FieldAppTypes_Cart_Vert_3D.cpp |   0
 .../Field/inst/FieldAppTypes_Unif_Cell_1D.cpp |   0
 .../Field/inst/FieldAppTypes_Unif_Cell_2D.cpp |   0
 .../Field/inst/FieldAppTypes_Unif_Cell_3D.cpp |   0
 .../Field/inst/FieldAppTypes_Unif_Vert_1D.cpp |   0
 .../Field/inst/FieldAppTypes_Unif_Vert_2D.cpp |   0
 .../Field/inst/FieldAppTypes_Unif_Vert_3D.cpp |   0
 .../Field/inst/Field_cmplx_Cart_Cell_1D.cpp   |   0
 .../Field/inst/Field_cmplx_Cart_Cell_2D.cpp   |   0
 .../Field/inst/Field_cmplx_Cart_Cell_3D.cpp   |   0
 .../Field/inst/Field_cmplx_Cart_Vert_1D.cpp   |   0
 .../Field/inst/Field_cmplx_Cart_Vert_2D.cpp   |   0
 .../Field/inst/Field_cmplx_Cart_Vert_3D.cpp   |   0
 .../Field/inst/Field_cmplx_Unif_Cell_1D.cpp   |   0
 .../Field/inst/Field_cmplx_Unif_Cell_2D.cpp   |   0
 .../Field/inst/Field_cmplx_Unif_Cell_3D.cpp   |   0
 .../Field/inst/Field_cmplx_Unif_Vert_1D.cpp   |   0
 .../Field/inst/Field_cmplx_Unif_Vert_2D.cpp   |   0
 .../Field/inst/Field_cmplx_Unif_Vert_3D.cpp   |   0
 ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp |   0
 ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp |   0
 ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp |   0
 ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp |   0
 ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp |   0
 ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp |   0
 ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp |   0
 ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp |   0
 ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp |   0
 ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp |   0
 ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp |   0
 ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp |   0
 .../src/Field/inst/Field_int_Cart_Cell_1D.cpp |   0
 .../src/Field/inst/Field_int_Cart_Cell_2D.cpp |   0
 .../src/Field/inst/Field_int_Cart_Cell_3D.cpp |   0
 .../src/Field/inst/Field_int_Cart_Vert_1D.cpp |   0
 .../src/Field/inst/Field_int_Cart_Vert_2D.cpp |   0
 .../src/Field/inst/Field_int_Cart_Vert_3D.cpp |   0
 .../src/Field/inst/Field_int_Unif_Cell_1D.cpp |   0
 .../src/Field/inst/Field_int_Unif_Cell_2D.cpp |   0
 .../src/Field/inst/Field_int_Unif_Cell_3D.cpp |   0
 .../src/Field/inst/Field_int_Unif_Vert_1D.cpp |   0
 .../src/Field/inst/Field_int_Unif_Vert_2D.cpp |   0
 .../src/Field/inst/Field_int_Unif_Vert_3D.cpp |   0
 ippl/src/Field/inst/GuardCellSizes_1D.cpp     |   0
 ippl/src/Field/inst/GuardCellSizes_2D.cpp     |   0
 ippl/src/Field/inst/GuardCellSizes_3D.cpp     |   0
 ippl/src/Field/inst/LFieldAppTypes_1D.cpp     |   0
 ippl/src/Field/inst/LFieldAppTypes_2D.cpp     |   0
 ippl/src/Field/inst/LFieldAppTypes_3D.cpp     |   0
 ippl/src/Field/inst/LField_1D.cpp             |   0
 ippl/src/Field/inst/LField_2D.cpp             |   0
 ippl/src/Field/inst/LField_3D.cpp             |   0
 ippl/src/FieldLayout/BinaryBalancer.h         |   0
 ippl/src/FieldLayout/BinaryBalancer.hpp       |   0
 ippl/src/FieldLayout/CMakeLists.txt           |   0
 ippl/src/FieldLayout/CenteredFieldLayout.h    |   0
 ippl/src/FieldLayout/CenteredFieldLayout.hpp  |   0
 ippl/src/FieldLayout/ConejoBalancer.h         |   0
 ippl/src/FieldLayout/ConejoBalancer.hpp       |   0
 ippl/src/FieldLayout/ConejoBalancer_inst.cpp  |   0
 ippl/src/FieldLayout/FieldLayout.h            |   0
 ippl/src/FieldLayout/FieldLayout.hpp          |   0
 ippl/src/FieldLayout/FieldLayoutUser.cpp      |   0
 ippl/src/FieldLayout/FieldLayoutUser.h        |   0
 ippl/src/FieldLayout/MultiBalancer.cpp        |   0
 ippl/src/FieldLayout/MultiBalancer.h          |   0
 ippl/src/FieldLayout/MultiBalancer.t.cpp      |   0
 ippl/src/FieldLayout/VRB.cpp                  |   0
 ippl/src/FieldLayout/VRB.h                    |   0
 ippl/src/FieldLayout/Vnode.h                  |   0
 ippl/src/FieldLayout/VnodeMultiBalancer.h     |   0
 ippl/src/FieldLayout/VnodeMultiBalancer.hpp   |   0
 .../inst/CenteredFieldLayout_Cart_Cell_1D.cpp |   0
 .../inst/CenteredFieldLayout_Cart_Cell_2D.cpp |   0
 .../inst/CenteredFieldLayout_Cart_Cell_3D.cpp |   0
 .../inst/CenteredFieldLayout_Cart_Vert_1D.cpp |   0
 .../inst/CenteredFieldLayout_Cart_Vert_2D.cpp |   0
 .../inst/CenteredFieldLayout_Cart_Vert_3D.cpp |   0
 .../inst/CenteredFieldLayout_Unif_Cell_1D.cpp |   0
 .../inst/CenteredFieldLayout_Unif_Cell_2D.cpp |   0
 .../inst/CenteredFieldLayout_Unif_Cell_3D.cpp |   0
 .../inst/CenteredFieldLayout_Unif_Vert_1D.cpp |   0
 .../inst/CenteredFieldLayout_Unif_Vert_2D.cpp |   0
 .../inst/CenteredFieldLayout_Unif_Vert_3D.cpp |   0
 ippl/src/FieldLayout/inst/FieldLayout_1D.cpp  |   0
 ippl/src/FieldLayout/inst/FieldLayout_2D.cpp  |   0
 ippl/src/FieldLayout/inst/FieldLayout_3D.cpp  |   0
 ippl/src/Index/CMakeLists.txt                 |   0
 ippl/src/Index/Index.cpp                      |   0
 ippl/src/Index/Index.h                        |   0
 ippl/src/Index/IndexInlines.h                 |   0
 ippl/src/Index/IndexedSIndex.h                |   0
 ippl/src/Index/LSIndex.h                      |   0
 ippl/src/Index/NDIndex.h                      |   0
 ippl/src/Index/NDIndexInlines.h               |   0
 ippl/src/Index/SIndex.h                       |   0
 ippl/src/Index/SIndex.hpp                     |   0
 ippl/src/Index/SIndexAssign.h                 |   0
 ippl/src/Index/SIndexAssign.hpp               |   0
 ippl/src/Index/SOffset.h                      |   0
 ippl/src/Index/inst/LSIndex_1D.cpp            |   0
 ippl/src/Index/inst/LSIndex_2D.cpp            |   0
 ippl/src/Index/inst/LSIndex_3D.cpp            |   0
 ippl/src/Index/inst/NDIndex_1D.cpp            |   0
 ippl/src/Index/inst/NDIndex_2D.cpp            |   0
 ippl/src/Index/inst/NDIndex_3D.cpp            |   0
 ippl/src/Index/inst/SIndex_1D.cpp             |   0
 ippl/src/Index/inst/SIndex_2D.cpp             |   0
 ippl/src/Index/inst/SIndex_3D.cpp             |   0
 ippl/src/Index/inst/SOffset_1D.cpp            |   0
 ippl/src/Index/inst/SOffset_2D.cpp            |   0
 ippl/src/Index/inst/SOffset_3D.cpp            |   0
 ippl/src/Ippl.h                               |   0
 ippl/src/IpplVersions.h.in                    |   0
 ippl/src/Meshes/CMakeLists.txt                |   0
 ippl/src/Meshes/Cartesian.h                   |   0
 ippl/src/Meshes/Cartesian.hpp                 |   0
 ippl/src/Meshes/CartesianCentering.h          |   0
 ippl/src/Meshes/CartesianCentering.hpp        |   0
 ippl/src/Meshes/CartesianCentering_inst.cpp   |   0
 ippl/src/Meshes/CartesianStencilSetup.h       |   0
 ippl/src/Meshes/Centering.cpp                 |   0
 ippl/src/Meshes/Centering.h                   |   0
 ippl/src/Meshes/Mesh.h                        |   0
 ippl/src/Meshes/Mesh.hpp                      |   0
 ippl/src/Meshes/UniformCartesian.h            |   0
 ippl/src/Meshes/UniformCartesian.hpp          |   0
 ippl/src/Meshes/inst/Cartesian_1D.cpp         |   0
 ippl/src/Meshes/inst/Cartesian_2D.cpp         |   0
 ippl/src/Meshes/inst/Cartesian_3D.cpp         |   0
 ippl/src/Meshes/inst/Mesh_1D.cpp              |   0
 ippl/src/Meshes/inst/Mesh_2D.cpp              |   0
 ippl/src/Meshes/inst/Mesh_3D.cpp              |   0
 ippl/src/Meshes/inst/UniformCartesian_1D.cpp  |   0
 ippl/src/Meshes/inst/UniformCartesian_2D.cpp  |   0
 ippl/src/Meshes/inst/UniformCartesian_3D.cpp  |   0
 ippl/src/Message/CMakeLists.txt               |   0
 ippl/src/Message/CRC.cpp                      |   0
 ippl/src/Message/CRC.h                        |   0
 ippl/src/Message/CommCreator.cpp              |   0
 ippl/src/Message/CommCreator.h                |   0
 ippl/src/Message/CommMPI.cpp                  |   0
 ippl/src/Message/CommMPI.h                    |   0
 ippl/src/Message/CommPM.cpp                   |   0
 ippl/src/Message/CommPM.h                     |   0
 ippl/src/Message/CommSHMEMPI.cpp              |   0
 ippl/src/Message/CommSHMEMPI.h                |   0
 ippl/src/Message/Communicate.cpp              |   0
 ippl/src/Message/Communicate.h                |   0
 ippl/src/Message/DataTypes.h                  |   0
 ippl/src/Message/Formatter.cpp                |   0
 ippl/src/Message/Formatter.h                  |   0
 ippl/src/Message/GlobalComm.h                 |   0
 ippl/src/Message/GlobalComm.hpp               |   0
 ippl/src/Message/Message.h                    |   0
 ippl/src/Message/Message.hpp                  |   0
 ippl/src/Message/MessageFunctions.cpp         |   0
 ippl/src/Message/Operations.h                 |   0
 ippl/src/Message/TagMaker.h                   |   0
 ippl/src/Message/Tags.h                       |   0
 ippl/src/PETE/CMakeLists.txt                  |   0
 ippl/src/PETE/IpplExpressions.h               |   0
 ippl/src/PETE/IpplTypeComputations.h          |   0
 ippl/src/PETE/PETE.h                          |   0
 ippl/src/PETE/TypeComputations.h              |   0
 ippl/src/Particle/AbstractParticle.h          |   0
 ippl/src/Particle/BoxParticleCachingPolicy.h  |   0
 ippl/src/Particle/CMakeLists.txt              |   0
 ippl/src/Particle/CellParticleCachingPolicy.h |   0
 ippl/src/Particle/GenArrayParticle.h          |   0
 ippl/src/Particle/GenParticle.h               |   0
 ippl/src/Particle/IntCIC.h                    |   0
 ippl/src/Particle/IntNGP.h                    |   0
 ippl/src/Particle/IntSUDS.h                   |   0
 ippl/src/Particle/IntTSC.h                    |   0
 ippl/src/Particle/Interpolator.h              |   0
 ippl/src/Particle/IpplParticleBase.h          |   0
 ippl/src/Particle/IpplParticleBase.hpp        |   0
 ippl/src/Particle/NoParticleCachingPolicy.h   |   0
 ippl/src/Particle/PAssign.h                   |   0
 ippl/src/Particle/PAssign.hpp                 |   0
 ippl/src/Particle/PAssignDefs.h               |   0
 .../Particle/PairBuilder/BasicPairBuilder.h   |   0
 ippl/src/Particle/PairBuilder/CMakeLists.txt  |   0
 .../Particle/PairBuilder/HashPairBuilder.h    |   0
 .../PairBuilder/HashPairBuilderPeriodic.h     |   0
 .../HashPairBuilderPeriodicParallel.h         |   0
 ...PairBuilderPeriodicParallel_globCHaining.h |   0
 .../src/Particle/PairBuilder/PairConditions.h |   0
 .../Particle/PairBuilder/SortingPairBuilder.h |   0
 ippl/src/Particle/ParticleAttrib.h            |   0
 ippl/src/Particle/ParticleAttrib.hpp          |   0
 ippl/src/Particle/ParticleAttribBase.h        |   0
 ippl/src/Particle/ParticleAttribElem.h        |   0
 ippl/src/Particle/ParticleBConds.h            |   0
 ippl/src/Particle/ParticleBalancer.h          |   0
 ippl/src/Particle/ParticleBalancer.hpp        |   0
 ippl/src/Particle/ParticleCashedLayout.h      |   0
 ippl/src/Particle/ParticleCashedLayout.hpp    |   0
 ippl/src/Particle/ParticleInteractAttrib.h    |   0
 ippl/src/Particle/ParticleInteractAttrib.hpp  |   0
 ippl/src/Particle/ParticleInteractLayout.h    |   0
 ippl/src/Particle/ParticleInteractLayout.hpp  |   0
 ippl/src/Particle/ParticleLayout.h            |   0
 ippl/src/Particle/ParticleLayout.hpp          |   0
 ippl/src/Particle/ParticleLayoutFromGrid.cpp  |   0
 ippl/src/Particle/ParticleLayoutFromGrid.h    |   0
 .../Particle/ParticleSpatialLayout.cppNudge   |   0
 ippl/src/Particle/ParticleSpatialLayout.h     |   0
 .../src/Particle/ParticleSpatialLayout.hNudge |   0
 ippl/src/Particle/ParticleSpatialLayout.hpp   |   0
 ippl/src/Particle/ParticleUniformLayout.h     |   0
 ippl/src/Particle/ParticleUniformLayout.hpp   |   0
 .../inst/ParticleAttribAppTypes_1D.cpp        |   0
 .../inst/ParticleAttribAppTypes_2D.cpp        |   0
 .../inst/ParticleAttribAppTypes_3D.cpp        |   0
 ippl/src/Particle/inst/ParticleAttrib_all.cpp |   0
 ippl/src/Particle/inst/ParticleBConds_1D.cpp  |   0
 ippl/src/Particle/inst/ParticleBConds_2D.cpp  |   0
 ippl/src/Particle/inst/ParticleBConds_3D.cpp  |   0
 .../inst/ParticleBaseInteract_Cart_1D.cpp     |   0
 .../inst/ParticleBaseInteract_Cart_2D.cpp     |   0
 .../inst/ParticleBaseInteract_Cart_3D.cpp     |   0
 .../inst/ParticleBaseInteract_Unif_1D.cpp     |   0
 .../inst/ParticleBaseInteract_Unif_2D.cpp     |   0
 .../inst/ParticleBaseInteract_Unif_3D.cpp     |   0
 .../inst/ParticleBaseSpatial_Cart_1D.cpp      |   0
 .../inst/ParticleBaseSpatial_Cart_2D.cpp      |   0
 .../inst/ParticleBaseSpatial_Cart_3D.cpp      |   0
 .../inst/ParticleBaseSpatial_Unif_1D.cpp      |   0
 .../inst/ParticleBaseSpatial_Unif_2D.cpp      |   0
 .../inst/ParticleBaseSpatial_Unif_3D.cpp      |   0
 .../Particle/inst/ParticleBaseUniform_1D.cpp  |   0
 .../Particle/inst/ParticleBaseUniform_2D.cpp  |   0
 .../Particle/inst/ParticleBaseUniform_3D.cpp  |   0
 .../inst/ParticleCashedLayout_Cart_1D.cpp     |   0
 .../inst/ParticleCashedLayout_Cart_2D.cpp     |   0
 .../inst/ParticleCashedLayout_Cart_3D.cpp     |   0
 .../inst/ParticleCashedLayout_Unif_1D.cpp     |   0
 .../inst/ParticleCashedLayout_Unif_2D.cpp     |   0
 .../inst/ParticleCashedLayout_Unif_3D.cpp     |   0
 .../ParticleInteractAttribAppTypes_1D.cpp     |   0
 .../ParticleInteractAttribAppTypes_2D.cpp     |   0
 .../ParticleInteractAttribAppTypes_3D.cpp     |   0
 .../inst/ParticleInteractAttrib_all.cpp       |   0
 .../inst/ParticleInteractLayout_Cart_1D.cpp   |   0
 .../inst/ParticleInteractLayout_Cart_2D.cpp   |   0
 .../inst/ParticleInteractLayout_Cart_3D.cpp   |   0
 .../inst/ParticleInteractLayout_Unif_1D.cpp   |   0
 .../inst/ParticleInteractLayout_Unif_2D.cpp   |   0
 .../inst/ParticleInteractLayout_Unif_3D.cpp   |   0
 ippl/src/Particle/inst/ParticleLayout_1D.cpp  |   0
 ippl/src/Particle/inst/ParticleLayout_2D.cpp  |   0
 ippl/src/Particle/inst/ParticleLayout_3D.cpp  |   0
 .../inst/ParticleSpatialLayout_Cart_1D.cpp    |   0
 .../inst/ParticleSpatialLayout_Cart_2D.cpp    |   0
 .../inst/ParticleSpatialLayout_Cart_3D.cpp    |   0
 .../inst/ParticleSpatialLayout_Unif_1D.cpp    |   0
 .../inst/ParticleSpatialLayout_Unif_2D.cpp    |   0
 .../inst/ParticleSpatialLayout_Unif_3D.cpp    |   0
 .../inst/ParticleUniformLayout_1D.cpp         |   0
 .../inst/ParticleUniformLayout_2D.cpp         |   0
 .../inst/ParticleUniformLayout_3D.cpp         |   0
 ippl/src/Profile/CMakeLists.txt               |   0
 ippl/src/Profile/Profiler.cpp                 |   0
 ippl/src/Profile/Profiler.h                   |   0
 ippl/src/ReadMeBuild                          |   0
 ippl/src/Region/CMakeLists.txt                |   0
 ippl/src/Region/NDRegion.h                    |   0
 ippl/src/Region/PRegion.h                     |   0
 ippl/src/Region/RegionLayout.h                |   0
 ippl/src/Region/RegionLayout.hpp              |   0
 ippl/src/Region/Rnode.h                       |   0
 ippl/src/Region/inst/NDRegion_1D.cpp          |   0
 ippl/src/Region/inst/NDRegion_2D.cpp          |   0
 ippl/src/Region/inst/NDRegion_3D.cpp          |   0
 ippl/src/Region/inst/PRegion_all.cpp          |   0
 ippl/src/Region/inst/RegionLayout_Cart_1D.cpp |   0
 ippl/src/Region/inst/RegionLayout_Cart_2D.cpp |   0
 ippl/src/Region/inst/RegionLayout_Cart_3D.cpp |   0
 ippl/src/Region/inst/RegionLayout_Unif_1D.cpp |   0
 ippl/src/Region/inst/RegionLayout_Unif_2D.cpp |   0
 ippl/src/Region/inst/RegionLayout_Unif_3D.cpp |   0
 ippl/src/SubField/CMakeLists.txt              |   0
 ippl/src/SubField/SubBareField.h              |   0
 ippl/src/SubField/SubBareField.hpp            |   0
 ippl/src/SubField/SubField.h                  |   0
 ippl/src/SubField/SubField.hpp                |   0
 ippl/src/SubField/SubFieldAssign.h            |   0
 ippl/src/SubField/SubFieldAssign.hpp          |   0
 ippl/src/SubField/SubFieldAssignDefs.h        |   0
 ippl/src/SubField/SubFieldIter.h              |   0
 ippl/src/SubField/SubFieldTraits.h            |   0
 ippl/src/SubParticle/CMakeLists.txt           |   0
 ippl/src/SubParticle/SubParticleAssign.h      |   0
 ippl/src/SubParticle/SubParticleAssign.hpp    |   0
 ippl/src/SubParticle/SubParticleAssignDefs.h  |   0
 ippl/src/SubParticle/SubParticleAttrib.h      |   0
 ippl/src/SubParticle/SubParticleAttrib.hpp    |   0
 ippl/src/Utility/CMakeLists.txt               |   0
 ippl/src/Utility/DiscBuffer.cpp               |   0
 ippl/src/Utility/DiscBuffer.h                 |   0
 ippl/src/Utility/DiscConfig.cpp               |   0
 ippl/src/Utility/DiscConfig.h                 |   0
 ippl/src/Utility/DiscField.h                  |   0
 ippl/src/Utility/DiscField.hpp                |   0
 ippl/src/Utility/DiscMeta.cpp                 |   0
 ippl/src/Utility/DiscMeta.h                   |   0
 ippl/src/Utility/DiscParticle.h               |   0
 ippl/src/Utility/DiscParticle.hpp             |   0
 ippl/src/Utility/DiscParticleFunctions.cpp    |   0
 ippl/src/Utility/DiscType.h                   |   0
 ippl/src/Utility/FieldBlock.h                 |   0
 ippl/src/Utility/FieldBlock.hpp               |   0
 ippl/src/Utility/FieldDebug.h                 |   0
 ippl/src/Utility/FieldDebug.hpp               |   0
 ippl/src/Utility/FieldDebugFunctions.cpp      |   0
 ippl/src/Utility/FieldDebugFunctions.h        |   0
 ippl/src/Utility/FieldDebugPrint.h            |   0
 ippl/src/Utility/FieldDebugPrint.hpp          |   0
 ippl/src/Utility/FieldPrint.h                 |   0
 ippl/src/Utility/FieldPrint.hpp               |   0
 ippl/src/Utility/FieldView.h                  |   0
 ippl/src/Utility/FieldView.hpp                |   0
 ippl/src/Utility/Inform.cpp                   |   0
 ippl/src/Utility/Inform.h                     |   0
 ippl/src/Utility/IplCounter.h                 |   0
 ippl/src/Utility/IpplCounter.cpp              |   0
 ippl/src/Utility/IpplCounter.h                |   0
 ippl/src/Utility/IpplException.h              |   0
 ippl/src/Utility/IpplInfo.cpp                 |   0
 ippl/src/Utility/IpplInfo.h                   |   0
 ippl/src/Utility/IpplMemoryUsage.cpp          |   0
 ippl/src/Utility/IpplMemoryUsage.h            |   0
 ippl/src/Utility/IpplMessageCounter.cpp       |   0
 ippl/src/Utility/IpplMessageCounter.h         |   0
 ippl/src/Utility/IpplStats.cpp                |   0
 ippl/src/Utility/IpplStats.h                  |   0
 ippl/src/Utility/IpplTimings.cpp              |   0
 ippl/src/Utility/IpplTimings.h                |   0
 ippl/src/Utility/NamedObj.h                   |   0
 ippl/src/Utility/PAssert.cpp                  |   0
 ippl/src/Utility/PAssert.h                    |   0
 ippl/src/Utility/ParticleDebug.h              |   0
 ippl/src/Utility/ParticleDebug.hpp            |   0
 ippl/src/Utility/ParticleDebugFunctions.cpp   |   0
 ippl/src/Utility/ParticleDebugFunctions.h     |   0
 ippl/src/Utility/Pool.cpp                     |   0
 ippl/src/Utility/Pool.h                       |   0
 ippl/src/Utility/Pooled.h                     |   0
 ippl/src/Utility/Pooled.hpp                   |   0
 ippl/src/Utility/RNGAssignDefs.h              |   0
 ippl/src/Utility/RNGBitReverse.h              |   0
 ippl/src/Utility/RNGLattice.h                 |   0
 ippl/src/Utility/RNGRand.h                    |   0
 ippl/src/Utility/RNGSimple.cpp                |   0
 ippl/src/Utility/RNGSimple.h                  |   0
 ippl/src/Utility/RNGXCI.cpp                   |   0
 ippl/src/Utility/RNGXCI.h                     |   0
 ippl/src/Utility/RNGXDiv.cpp                  |   0
 ippl/src/Utility/RNGXDiv.h                    |   0
 ippl/src/Utility/RandomNumberGen.cpp          |   0
 ippl/src/Utility/RandomNumberGen.h            |   0
 ippl/src/Utility/RefBlock.h                   |   0
 ippl/src/Utility/RefCounted.h                 |   0
 ippl/src/Utility/SequenceGen.h                |   0
 ippl/src/Utility/StaticIpplInfo.cpp           |   0
 ippl/src/Utility/StaticIpplInfo.h             |   0
 ippl/src/Utility/Timer.cpp                    |   0
 ippl/src/Utility/Timer.h                      |   0
 ippl/src/Utility/Unique.cpp                   |   0
 ippl/src/Utility/Unique.h                     |   0
 ippl/src/Utility/User.cpp                     |   0
 ippl/src/Utility/User.h                       |   0
 ippl/src/Utility/UserList.cpp                 |   0
 ippl/src/Utility/UserList.h                   |   0
 ippl/src/Utility/Vec.h                        |   0
 ippl/src/Utility/my_auto_ptr.h                |   0
 ippl/src/Utility/vmap.h                       |   0
 ippl/src/Utility/vmap.hpp                     |   0
 ippl/src/config.h.in                          |   0
 ippl/test/6dtrack/.job                        |   0
 ippl/test/6dtrack/CMakeLists.txt              |   0
 .../GTChargedParticles/GTChargedParticles.cpp |   0
 .../GTChargedParticles/GTChargedParticles.hh  |   0
 ippl/test/6dtrack/GTConfigure/GTConfigure.hh  |   0
 .../6dtrack/GTDistribution/GTDistribution.cc  |   0
 .../6dtrack/GTDistribution/GTDistribution.hh  |   0
 .../6dtrack/GTDistribution/hammersley.cpp     |   0
 ippl/test/6dtrack/GTDistribution/hammersley.h |   0
 ippl/test/6dtrack/GTDistribution/makeranlib   |   0
 ippl/test/6dtrack/GTDistribution/ranlib.cc    |   0
 ippl/test/6dtrack/GTDistribution/ranlib.h     |   0
 ippl/test/6dtrack/GTElements/ACG.cpp          |   0
 ippl/test/6dtrack/GTElements/ACG.h            |   0
 ippl/test/6dtrack/GTElements/Elements.hh      |   0
 ippl/test/6dtrack/GTElements/GTElemData.hh    |   0
 ippl/test/6dtrack/GTElements/GTGenElement.hh  |   0
 ippl/test/6dtrack/GTElements/GTIBS.hh         |   0
 .../test/6dtrack/GTElements/GTMultipoleMap.hh |   0
 ippl/test/6dtrack/GTElements/GTRFCavityMap.hh |   0
 ippl/test/6dtrack/GTElements/GTRadiation.hh   |   0
 ippl/test/6dtrack/GTElements/GTRecquadMap.hh  |   0
 ippl/test/6dtrack/GTElements/IBSProcess.cpp   |   0
 ippl/test/6dtrack/GTElements/IBSProcess.h     |   0
 .../GTElements/Merlin/PhotonSpectrumGen.cpp   |   0
 .../Merlin/SynchRadParticleProcess.cpp        |   0
 .../Merlin/SynchRadParticleProcess.h          |   0
 ippl/test/6dtrack/Makefile                    |   0
 ippl/test/6dtrack/Makefile.def                |   0
 ippl/test/6dtrack/dsmc6d.cpp                  |   0
 ippl/test/6dtrack/lat1.dat                    |   0
 ippl/test/6dtrack/lat60.dat                   |   0
 ippl/test/6dtrack/lat61.dat                   |   0
 ippl/test/6dtrack/lat64.dat                   |   0
 ippl/test/6dtrack/lat65.dat                   |   0
 ippl/test/6dtrack/lat66.dat                   |   0
 ippl/test/AMR/AmrDoxyfile                     |   0
 ippl/test/AMR/AmrOpal.cpp                     |   0
 ippl/test/AMR/AmrOpal.h                       |   0
 ippl/test/AMR/AmrOpal_F.h                     |   0
 ippl/test/AMR/CMakeLists.txt                  |   0
 ippl/test/AMR/Distribution.cpp                |   0
 ippl/test/AMR/Distribution.h                  |   0
 ippl/test/AMR/H5Reader.cpp                    |   0
 ippl/test/AMR/H5Reader.h                      |   0
 ippl/test/AMR/MGTSolver.cpp                   |   0
 ippl/test/AMR/MGTSolver.h                     |   0
 ippl/test/AMR/README                          |   0
 ippl/test/AMR/Solver.cpp                      |   0
 ippl/test/AMR/Solver.h                        |   0
 ippl/test/AMR/Tagging_nd.f90                  |   0
 .../amrex-only/AssignMultiLevelDensity.cpp    |   0
 ippl/test/AMR/amrex-only/CMakeLists.txt       |   0
 ippl/test/AMR/amrex-only/Solver.cpp           |   0
 ippl/test/AMR/amrex-only/Solver.h             |   0
 ippl/test/AMR/amrex-only/inputs               |   0
 ippl/test/AMR/amrex-only/testDeposition.cpp   |   0
 .../AMR/amrex-only/testDepositionFail.cpp     |   0
 ippl/test/AMR/amrex-only/testGeometry.cpp     |   0
 ippl/test/AMR/amrex-only/testSolverFail.cpp   |   0
 ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp     |   0
 ippl/test/AMR/boxlib-amr/AmrPartBunch.h       |   0
 ippl/test/AMR/boxlib-amr/CMakeLists.txt       |   0
 ippl/test/AMR/boxlib-amr/PartBunch.h          |   0
 ippl/test/AMR/boxlib-amr/PartBunchBase.h      |   0
 ippl/test/AMR/boxlib-amr/PoissonProblems.cpp  |   0
 ippl/test/AMR/boxlib-amr/PoissonProblems.h    |   0
 ippl/test/AMR/boxlib-amr/error.cpp            |   0
 ippl/test/AMR/boxlib-amr/iterative.cpp        |   0
 ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp |   0
 ippl/test/AMR/boxlib-amr/testGaussian.cpp     |   0
 ippl/test/AMR/boxlib-amr/testGridSolve.cpp    |   0
 ippl/test/AMR/boxlib-amr/testH5Read.cpp       |   0
 ippl/test/AMR/boxlib-amr/testHdf5.cpp         |   0
 ippl/test/AMR/boxlib-amr/testMultiBunch.cpp   |   0
 .../AMR/boxlib-amr/testOldPerformance.cpp     |   0
 ippl/test/AMR/boxlib-amr/testOldPlasma.cpp    |   0
 .../boxlib-amr/testPerfectLoadBalancing.cpp   |   0
 ippl/test/AMR/boxlib-amr/testReal.cpp         |   0
 ippl/test/AMR/boxlib-amr/testSolver.cpp       |   0
 ippl/test/AMR/boxlib-amr/testTracker.cpp      |   0
 ippl/test/AMR/boxlib-amr/testUnifSphere.cpp   |   0
 .../AMR/boxlib-amr/testUnifSphereGrid.cpp     |   0
 ippl/test/AMR/boxlib-amr/testUniform.cpp      |   0
 ippl/test/AMR/boxlib-amr/toFile.cpp           |   0
 ippl/test/AMR/helper_functions.h              |   0
 ippl/test/AMR/ippl-amr/AmrParticleBase.h      |   0
 ippl/test/AMR/ippl-amr/AmrParticleBase.hpp    |   0
 ippl/test/AMR/ippl-amr/CMakeLists.txt         |   0
 ippl/test/AMR/ippl-amr/LevelNumCounter.h      |   0
 ippl/test/AMR/ippl-amr/PartBunchAmr.h         |   0
 ippl/test/AMR/ippl-amr/ParticleAmrLayout.h    |   0
 ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp  |   0
 ippl/test/AMR/ippl-amr/inputs                 |   0
 ippl/test/AMR/ippl-amr/testAmrPartBase.cpp    |   0
 ippl/test/AMR/ippl-amr/testCRTP.cpp           |   0
 .../AMR/ippl-amr/testDomainTransformSolve.cpp |   0
 ippl/test/AMR/ippl-amr/testFromH5.cpp         |   0
 ippl/test/AMR/ippl-amr/testGaussian.cpp       |   0
 .../test/AMR/ippl-amr/testInitGuessSolver.cpp |   0
 ippl/test/AMR/ippl-amr/testInitialBox.cpp     |   0
 ippl/test/AMR/ippl-amr/testLayout.cpp         |   0
 .../test/AMR/ippl-amr/testMultipleSources.cpp |   0
 ippl/test/AMR/ippl-amr/testNewTracker.cpp     |   0
 ippl/test/AMR/ippl-amr/testPerformance.cpp    |   0
 ippl/test/AMR/ippl-amr/testPlasma.cpp         |   0
 ippl/test/AMR/ippl-amr/testScatterAMReX.cpp   |   0
 ippl/test/AMR/ippl-amr/testTagging.cpp        |   0
 ippl/test/AMR/ippl-amr/testUnifBox.cpp        |   0
 ippl/test/AMR/ippl-amr/testUnifSphere.cpp     |   0
 ippl/test/AMR/ippl-bunch/AmrPartBunch.h       |   0
 ippl/test/AMR/ippl-bunch/CMakeLists.txt       |   0
 ippl/test/AMR/ippl-bunch/PartBunch.h          |   0
 ippl/test/AMR/ippl-bunch/PartBunchBase.h      |   0
 .../AMR/ippl-bunch/testAdapterPattern.cpp     |   0
 ippl/test/AMR/ippl-bunch/testCRTP.cpp         |   0
 ippl/test/AMR/trilinos/Amesos2BottomSolver.h  |   0
 .../test/AMR/trilinos/Amesos2BottomSolver.hpp |   0
 ippl/test/AMR/trilinos/AmrBoundary.h          |   0
 ippl/test/AMR/trilinos/AmrDirichletBoundary.h |   0
 ippl/test/AMR/trilinos/AmrInterpolater.h      |   0
 .../AMR/trilinos/AmrLagrangeInterpolater.h    |   0
 .../AMR/trilinos/AmrLagrangeInterpolater.hpp  |   0
 ippl/test/AMR/trilinos/AmrMultiGrid.cpp       |   0
 ippl/test/AMR/trilinos/AmrMultiGrid.h         |   0
 ippl/test/AMR/trilinos/AmrMultiGridCore.h     |   0
 ippl/test/AMR/trilinos/AmrMultiGridDefs.h     |   0
 ippl/test/AMR/trilinos/AmrMultiGridLevel.h    |   0
 ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp  |   0
 ippl/test/AMR/trilinos/AmrOpenBoundary.h      |   0
 ippl/test/AMR/trilinos/AmrPCInterpolater.h    |   0
 ippl/test/AMR/trilinos/AmrPCInterpolater.hpp  |   0
 ippl/test/AMR/trilinos/AmrPeriodicBoundary.h  |   0
 ippl/test/AMR/trilinos/AmrPreconditioner.h    |   0
 ippl/test/AMR/trilinos/AmrRedistributor.cpp   |   0
 ippl/test/AMR/trilinos/AmrRedistributor.h     |   0
 ippl/test/AMR/trilinos/AmrSmoother.cpp        |   0
 ippl/test/AMR/trilinos/AmrSmoother.h          |   0
 .../AMR/trilinos/AmrTrilinearInterpolater.h   |   0
 .../AMR/trilinos/AmrTrilinearInterpolater.hpp |   0
 ippl/test/AMR/trilinos/BelosBottomSolver.h    |   0
 ippl/test/AMR/trilinos/BelosBottomSolver.hpp  |   0
 ippl/test/AMR/trilinos/BottomSolver.h         |   0
 ippl/test/AMR/trilinos/CMakeLists.txt         |   0
 ippl/test/AMR/trilinos/FFTBottomSolver.cpp    |   0
 ippl/test/AMR/trilinos/FFTBottomSolver.h      |   0
 .../test/AMR/trilinos/Ifpack2Preconditioner.h |   0
 .../AMR/trilinos/Ifpack2Preconditioner.hpp    |   0
 ippl/test/AMR/trilinos/MueLuBottomSolver.h    |   0
 ippl/test/AMR/trilinos/MueLuBottomSolver.hpp  |   0
 ippl/test/AMR/trilinos/MueLuPreconditioner.h  |   0
 .../test/AMR/trilinos/MueLuPreconditioner.hpp |   0
 ippl/test/AMR/trilinos/build.h                |   0
 ippl/test/AMR/trilinos/testAmrMultigrid.cpp   |   0
 ippl/test/AMR/trilinos/testBitPattern.cpp     |   0
 ippl/test/AMR/trilinos/testBoundaryMatrix.cpp |   0
 ippl/test/AMR/trilinos/testBoundaryVector.cpp |   0
 ippl/test/AMR/trilinos/testCopy.cpp           |   0
 .../AMR/trilinos/testInterpolationMatrix.cpp  |   0
 ippl/test/AMR/trilinos/testLagrange.cpp       |   0
 ippl/test/AMR/trilinos/testNoFine.cpp         |   0
 ippl/test/AMR/trilinos/testPoissonMatrix.cpp  |   0
 .../AMR/trilinos/testRestrictionMatrix.cpp    |   0
 ippl/test/AMR/trilinos/testSmootherMatrix.cpp |   0
 .../AMR/trilinos/testSolverComparison.cpp     |   0
 .../AMR/trilinos/testSpecialPoissonMatrix.cpp |   0
 ippl/test/AMR/trilinos/testTrilinosSolver.cpp |   0
 ippl/test/AMR/trilinos/testWithFine.cpp       |   0
 ippl/test/AMR/trilinos/tools.h                |   0
 ippl/test/AMR/trilinos/trilinos2ippl.cpp      |   0
 ippl/test/AMR/writePlotFile.H                 |   0
 ippl/test/CMakeLists.txt                      |   0
 ippl/test/Cartesian/CMakeLists.txt            |   0
 ippl/test/Cartesian/Makefile                  |   0
 ippl/test/Cartesian/TestCartesian-1.cpp       |   0
 ippl/test/CavityTrack/CMakeLists.txt          |   0
 ippl/test/CavityTrack/CavitySolver.cpp        |   0
 ippl/test/CavityTrack/CavitySolver.h          |   0
 .../ChargedParticles/ChargedParticles.hh      |   0
 .../CavityTrack/Distribution/Distribution.cpp |   0
 .../CavityTrack/Distribution/Distribution.hh  |   0
 ippl/test/CavityTrack/Distribution/makefile   |   0
 ippl/test/CavityTrack/Distribution/ranlib.cc  |   0
 ippl/test/CavityTrack/Makefile                |   0
 ippl/test/CavityTrack/TestRun/fort.22         |   0
 .../CavityTrack/Validation/CavAccel-1.mws     |   0
 ippl/test/CavityTrack/Validation/ReadMe       |   0
 ippl/test/CavityTrack/Validation/makePlot.glp |   0
 .../CavityTrack/Validation/swk/getPosVel.swk  |   0
 .../CavityTrack/Validation/swk/sk-Tint.swk    |   0
 .../CavityTrack/Validation/swk/sk-Tint2.swk   |   0
 ippl/test/CavityTrack/Validation/trial.mws    |   0
 ippl/test/CavityTrack/cavitytrack.cpp         |   0
 ippl/test/FFT/CMakeLists.txt                  |   0
 ippl/test/FFT/Makefile                        |   0
 .../FFT/SeaborgRes/SPP/TestA-DAccuracy.ps     |   0
 ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps  |   0
 .../test/FFT/SeaborgRes/SPP/data/TestA128.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestA256.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestB128.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestB256.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestC128.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestC256.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out |   0
 ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestD128.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestD256.out |   0
 .../test/FFT/SeaborgRes/SPP/data/TestD512.out |   0
 ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl     |   0
 .../test/FFT/SeaborgRes/SSP/data/TestA128.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestA256.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestB128.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestB256.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestC128.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestC256.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out |   0
 ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestD128.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestD256.out |   0
 .../test/FFT/SeaborgRes/SSP/data/TestD512.out |   0
 ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps   |   0
 ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps      |   0
 ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps     |   0
 ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp      |   0
 ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp      |   0
 ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp      |   0
 ippl/test/FFT/SeaborgRes/TestFFT.cpp          |   0
 ippl/test/FFT/SeaborgRes/TestRC.cpp           |   0
 ippl/test/FFT/SeaborgRes/data/TestA1024.out   |   0
 ippl/test/FFT/SeaborgRes/data/TestA128.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestA16.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestA256.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestA32.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestA512.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestA64.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestB1024.out   |   0
 ippl/test/FFT/SeaborgRes/data/TestB128.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestB16.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestB256.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestB32.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestB512.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestB64.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestC1024.out   |   0
 ippl/test/FFT/SeaborgRes/data/TestC128.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestC16.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestC256.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestC32.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestC512.out    |   0
 ippl/test/FFT/SeaborgRes/data/TestC64.out     |   0
 ippl/test/FFT/SeaborgRes/data/TestD256.out    |   0
 ippl/test/FFT/SeaborgRes/data/makePlot.gpl    |   0
 ippl/test/FFT/SeaborgRes/fftspeed.cpp         |   0
 ippl/test/FFT/SeaborgRes/makePlot.gpl         |   0
 ippl/test/FFT/TestFFT-1.cpp                   |   0
 ippl/test/FFT/TestFFT-2.cpp                   |   0
 ippl/test/FFT/TestFFT-XT3.cpp                 |   0
 ippl/test/FFT/TestFFT.cpp.org                 |   0
 ippl/test/FFT/TestFFTCos.cpp                  |   0
 ippl/test/FFT/TestFFTSin.cpp                  |   0
 ippl/test/FFT/TestRC.cpp                      |  65 +++++++++++++++---
 ippl/test/FFT/TestRCMIC.cpp                   |   0
 ippl/test/FFT/fftspeed.cpp                    |   0
 ippl/test/FFT/nodefile                        |   0
 ippl/test/FFT/run                             |   0
 ippl/test/Hal/CMakeLists.txt                  |   0
 ippl/test/Hal/Makefile                        |   0
 ippl/test/Hal/yfld_q1.cpp                     |   0
 ippl/test/Hal/yfld_q1_err.txt                 |   0
 ippl/test/Hal/yfld_q2.cpp                     |   0
 ippl/test/Makefile.def                        |   0
 ippl/test/PwrSpec/CMakeLists.txt              |   0
 ippl/test/PwrSpec/Makefile                    |   0
 ippl/test/PwrSpec/PwrSpec.cpp                 |   0
 ippl/test/PwrSpec/PwrSpec.h                   |   0
 ippl/test/PwrSpec/testPwrSpec.cpp             |   0
 ippl/test/adaTests/CMakeLists.txt             |   0
 ippl/test/adaTests/Makefile                   |   0
 ippl/test/adaTests/TestDot1.cpp               |   0
 ippl/test/adaTests/TestDot2.cpp               |   0
 ippl/test/hdf5/.depend                        |   0
 ippl/test/hdf5/CMakeLists.txt                 |   0
 ippl/test/hdf5/Makefile                       |   0
 ippl/test/hdf5/hdf5para-1.inp                 |   0
 ippl/test/hdf5/hdf5para-2.inp                 |   0
 ippl/test/hdf5/hdf5read-1.cpp                 |   0
 ippl/test/hdf5/hdf5write-1.cpp                |   0
 ippl/test/hdf5/testHdf5-1.cpp                 |   0
 ippl/test/nok/CMakeLists.txt                  |   0
 ippl/test/nok/t3.cpp                          |   0
 ippl/test/parallel/2ddens.cpp                 |   0
 ippl/test/parallel/CMakeLists.txt             |   0
 ippl/test/parallel/Makefile                   |   0
 ippl/test/parallel/dualmpi.cpp                |   0
 ippl/test/parallel/reduce-1.cpp               |   0
 ippl/test/parallel/reduce-2.cpp               |   0
 ippl/test/parallel/volley.cpp                 |   0
 ippl/test/particle/1dperiodic.cpp             |   0
 ippl/test/particle/CMakeLists.txt             |   0
 ippl/test/particle/CacheTest.cpp              |   0
 ippl/test/particle/ChargedParticleFactory.hpp |   0
 ippl/test/particle/DiscParticle.cpp           |   0
 ippl/test/particle/FFTFieldSolver.cpp         |   0
 ippl/test/particle/FieldCompare.cpp           |   0
 ippl/test/particle/Makefile                   |   0
 ippl/test/particle/PIC2d.cpp                  |   0
 ippl/test/particle/PIC3d.cpp                  |   0
 ippl/test/particle/PIC3dBCo-p.cpp             |   0
 ippl/test/particle/PIC3dBCo-p.cpp.nok         |   0
 ippl/test/particle/PairTest.cpp               |   0
 ippl/test/particle/VTKFieldWriterParallel.hpp |   0
 ippl/test/particle/chsr-1.cpp                 |   0
 ippl/test/particle/chsr-2.cpp                 |   0
 ippl/test/particle/cref.cpp                   |   0
 ippl/test/particle/interpolate.cpp            |   0
 ippl/test/particle/loadbalance.cpp            |   0
 ippl/test/particle/neighNodeTest1.cpp         |   0
 ippl/test/particle/nodefile                   |   0
 ippl/test/particle/p3m3d.cpp                  |   0
 ippl/test/particle/p3m3dHeating.cpp           |   0
 ippl/test/particle/p3m3dMicrobunching.cpp     |   0
 ippl/test/particle/p3m3dRegressionTests.cpp   |   0
 ippl/test/particle/p3m3dTwoStream.cpp         |   0
 ippl/test/particle/p3m3dTwoStreamParallel.cpp |   0
 ippl/test/particle/p3m3dplot.p                |   0
 ippl/test/particle/p3m3dreadme.txt            |   0
 ippl/test/particle/parexp.cpp                 |   0
 ippl/test/particle/pbconds.cpp                |   0
 ippl/test/particle/pbconds3D.cpp              |   0
 ippl/test/particle/pbconds_vis.cpp            |   0
 ippl/test/particle/pdbtest.cpp                |   0
 ippl/test/particle/run                        |   0
 ippl/test/particle/salman-1.cpp               |   0
 ippl/test/particle/spatial.cpp                |   0
 ippl/test/particle/spatial.cpp.org            |   0
 ippl/test/particle/test-scatter-1.cpp         |   0
 ippl/test/particle/test-update-1.cpp          |   0
 ippl/test/particle/test-update-1.sge          |   0
 ippl/test/particle/typtest.cpp                |   0
 ippl/test/particle/uniform.cpp                |   0
 ippl/test/particle/vlasovBB1D.cpp             |   0
 ippl/test/poissonsolvers/CMakeLists.txt       |   0
 ippl/test/poissonsolvers/Makefile             |   0
 ippl/test/poissonsolvers/ReadMe               |   0
 ippl/test/poissonsolvers/data1.dat            |   0
 ippl/test/poissonsolvers/femmgTest.cpp        |   0
 ippl/test/simple-new/.depend                  |   0
 ippl/test/simple-new/CMakeLists.txt           |   0
 ippl/test/simple-new/Makefile                 |   0
 ippl/test/simple-new/id-test1.cpp             |   0
 ippl/test/simple-new/memcheck-1.cpp           |   0
 ippl/test/simple-new/t1.cpp                   |   0
 ippl/test/simple-new/t2.cpp                   |   0
 ippl/test/simple-new/t3.cpp                   |   0
 ippl/test/simple-new/t4.cpp                   |   0
 ippl/test/simple-new/t5.cpp                   |   0
 ippl/test/simple-new/t6.cpp                   |   0
 ippl/test/simple-new/t7.cpp                   |   0
 ippl/test/simple-new/t8.cpp                   |   0
 ippl/test/simple/.depend                      |   0
 ippl/test/simple/2ddiffusion-1.cpp            |   0
 ippl/test/simple/CMakeLists.txt               |   0
 ippl/test/simple/Clock.h                      |   0
 ippl/test/simple/FVecOps.cpp                  |   0
 ippl/test/simple/Makefile                     |   0
 ippl/test/simple/ScalarAdvection.cpp          |   0
 ippl/test/simple/Slice.cpp                    |   0
 ippl/test/simple/TestAverageVC_CV.cpp         |   0
 ippl/test/simple/TestBC.cpp                   |   0
 ippl/test/simple/TestCartesianCentering.cpp   |   0
 ippl/test/simple/TestEureka.cpp               |   0
 ippl/test/simple/TestFieldDebug.cpp           |   0
 ippl/test/simple/TestFieldDebug2.cpp          |   0
 ippl/test/simple/TestParticleDebug.cpp        |   0
 .../test/simple/TestParticleDebugParallel.cpp |   0
 ippl/test/simple/TestPeriodicBC.cpp           |   0
 ippl/test/simple/TestPeriodicBC.txt           |   0
 ippl/test/simple/TestPeriodicBCGuardCell1.txt |   0
 ippl/test/simple/TestPeriodicBCGuardCell2.txt |   0
 ippl/test/simple/TestScalarIndexing.cpp       |   0
 ippl/test/simple/TestTensorUnaryOps.cpp       |   0
 ippl/test/simple/balance.cpp                  |   0
 ippl/test/simple/bc.cpp                       |   0
 ippl/test/simple/bc2.cpp                      |   0
 ippl/test/simple/bc3.cpp                      |   0
 ippl/test/simple/bc_convert.cpp               |   0
 ippl/test/simple/bool.cpp                     |   0
 ippl/test/simple/component.cpp                |   0
 ippl/test/simple/compressed.cpp               |   0
 ippl/test/simple/conejo_balance.cpp           |   0
 ippl/test/simple/ctoc.cpp                     |   0
 ippl/test/simple/cv.cpp                       |   0
 ippl/test/simple/doof2d_a.cpp                 |   0
 ippl/test/simple/doof2d_complex.cpp           |   0
 ippl/test/simple/doof2d_file.cpp              |   0
 ippl/test/simple/doof2d_simple.cpp            |   0
 ippl/test/simple/doof2d_vis.cpp               |   0
 ippl/test/simple/doof3d_file.cpp              |   0
 ippl/test/simple/doof3d_vis.cpp               |   0
 ippl/test/simple/fermi-dirac-field.cpp        |   0
 ippl/test/simple/fivefields.cpp               |   0
 ippl/test/simple/float.cpp                    |   0
 ippl/test/simple/flyercode.cpp                |   0
 ippl/test/simple/funcface.cpp                 |   0
 ippl/test/simple/gcprint.cpp                  |   0
 ippl/test/simple/itercompress.cpp             |   0
 ippl/test/simple/left.cpp                     |   0
 ippl/test/simple/minmax.cpp                   |   0
 ippl/test/simple/patches.cpp                  |   0
 ippl/test/simple/reduce.cpp                   |   0
 ippl/test/simple/reduceloc.cpp                |   0
 ippl/test/simple/repartition.cpp              |   0
 ippl/test/simple/repartition.cpp.org          |   0
 ippl/test/simple/send                         |   0
 ippl/test/simple/single.cpp                   |   0
 ippl/test/simple/slices.cpp                   |   0
 ippl/test/simple/soffset.cpp                  |   0
 ippl/test/simple/subdivide.cpp                |   0
 ippl/test/simple/subreadtest.cpp              |   0
 ippl/test/simple/t.cpp                        |   0
 ippl/test/simple/t1.cpp                       |   0
 ippl/test/simple/t2.cpp                       |   0
 ippl/test/simple/t3.cpp                       |   0
 ippl/test/simple/t4.cpp                       |   0
 ippl/test/simple/t5.cpp                       |   0
 ippl/test/simple/t6.cpp                       |   0
 ippl/test/simple/t7.cpp                       |   0
 ippl/test/simple/t8.cpp                       |   0
 ippl/test/simple/transpose.cpp                |   0
 ippl/test/simple/tv.cpp                       |   0
 ippl/test/simple/tz.cpp                       |   0
 ippl/test/simple/vc.cpp                       |   0
 ippl/test/sindex/CMakeLists.txt               |   0
 ippl/test/sindex/Makefile                     |   0
 ippl/test/sindex/TestSIndex.cpp               |   0
 ippl/test/sindex/compsindex.cpp               |   0
 ippl/test/sindex/sindex.cpp                   |   0
 ippl/test/sindex/subfield.cpp                 |   0
 ippl/test/sindex/vertcell.cpp                 |   0
 ippl/test/speed/CMakeLists.txt                |   0
 ippl/test/speed/Makefile                      |   0
 ippl/test/speed/diskfield.cpp                 |   0
 ippl/test/speed/gcspeed.cpp                   |   0
 ippl/test/speed/make.out                      |   0
 ippl/test/speed/particle_simple.cpp           |   0
 ippl/test/speed/reducespeed.cpp               |   0
 ippl/test/speed/speed1.cpp                    |   0
 ippl/test/speed/stencil1.cpp                  |   0
 ippl/test/speed/stencil_c.c                   |   0
 ippl/test/toyfdtf/CMakeLists.txt              |   0
 ippl/test/toyfdtf/Makefile                    |   0
 .../toyfdtf/ToyFDTD-DataSink/DataSink.cpp     |   0
 ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h |   0
 .../toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp |   0
 ippl/test/toyfdtf/ipplToyFDTD2.cpp            |   0
 ippl/test/ttrack/CMakeLists.txt               |   0
 ippl/test/ttrack/Doxyfile                     |   0
 .../GTChargedParticles/GTChargedParticles.cpp |   0
 .../GTChargedParticles/GTChargedParticles.hh  |   0
 ippl/test/ttrack/GTConfigure/GTConfigure.hh   |   0
 .../ttrack/GTDistribution/GTDistribution.cc   |   0
 .../ttrack/GTDistribution/GTDistribution.hh   |   0
 .../test/ttrack/GTDistribution/hammersley.cpp |   0
 ippl/test/ttrack/GTDistribution/hammersley.h  |   0
 ippl/test/ttrack/GTDistribution/ranlib.cc     |   0
 ippl/test/ttrack/GTDistribution/ranlib.h      |   0
 ippl/test/ttrack/GTElements/ACG.cpp           |   0
 ippl/test/ttrack/GTElements/ACG.h             |   0
 ippl/test/ttrack/GTElements/Elements.hh       |   0
 ippl/test/ttrack/GTElements/GTElemData.hh     |   0
 ippl/test/ttrack/GTElements/GTGenElement.hh   |   0
 ippl/test/ttrack/GTElements/GTIBS.hh          |   0
 ippl/test/ttrack/GTElements/GTMultipoleMap.hh |   0
 ippl/test/ttrack/GTElements/GTRFCavityMap.hh  |   0
 ippl/test/ttrack/GTElements/GTRadiation.hh    |   0
 ippl/test/ttrack/GTElements/GTRecquadMap.hh   |   0
 ippl/test/ttrack/GTElements/IBSProcess.cpp    |   0
 ippl/test/ttrack/GTElements/IBSProcess.h      |   0
 .../GTElements/Merlin/PhotonSpectrumGen.cpp   |   0
 .../Merlin/SynchRadParticleProcess.cpp        |   0
 .../Merlin/SynchRadParticleProcess.h          |   0
 ippl/test/ttrack/GTUtilities/GTConst.hh       |   0
 ippl/test/ttrack/GTUtilities/GTPhysics.cc     |   0
 ippl/test/ttrack/GTUtilities/GTPhysics.h      |   0
 ippl/test/ttrack/Makefile                     |   0
 ippl/test/ttrack/Makefile.def                 |   0
 ippl/test/ttrack/README                       |   0
 ippl/test/ttrack/aur-1.dat                    |   0
 ippl/test/ttrack/dsmc.cpp                     |   0
 ippl/test/ttrack/report/direct.tex            |   0
 ippl/test/ttrack/report/divrad.png            | Bin
 ippl/test/ttrack/report/feynman.png           | Bin
 ippl/test/ttrack/report/future.tex            |   0
 ippl/test/ttrack/report/implementation.tex    |   0
 ippl/test/ttrack/report/introduction.tex      |   0
 ippl/test/ttrack/report/literature.tex        |   0
 ippl/test/ttrack/report/longtermbehavior.png  | Bin
 .../ttrack/report/presentation/aurlong.pdf    | Bin
 .../test/ttrack/report/presentation/inter.pdf | Bin
 .../ttrack/report/presentation/lowemi.dat     |   0
 .../report/presentation/presentation.tex      |   0
 .../ttrack/report/presentation/scaling.dat    |   0
 .../presentation/sls-acceptancevslifetime.dat |   0
 .../report/presentation/sls-longterm.pdf      | Bin
 ippl/test/ttrack/report/radius.png            | Bin
 ippl/test/ttrack/report/radius2.png           | Bin
 ippl/test/ttrack/report/report.tex            |   0
 ippl/test/ttrack/report/results.tex           |   0
 ippl/test/ttrack/report/simulation.tex        |   0
 ippl/test/ttrack/report/theory.tex            |   0
 ippl/test/ttrack/sls-1.dat                    |   0
 ippl/test/ttrack/touscheklifetime.nb          |   0
 ippl/test/twostream-1/.depend                 |   0
 ippl/test/twostream-1/CMakeLists.txt          |   0
 ippl/test/twostream-1/Makefile                |   0
 .../Utility/Algorithms/AbstractMapper.cpp     |   0
 .../Utility/Algorithms/AbstractMapper.h       |   0
 .../Utility/Algorithms/AbstractTracker.cpp    |   0
 .../Utility/Algorithms/AbstractTracker.h      |   0
 .../Utility/Algorithms/DefaultVisitor.cpp     |   0
 .../Utility/Algorithms/DefaultVisitor.h       |   0
 .../Utility/Algorithms/Flagger.cpp            |   0
 .../twostream-1/Utility/Algorithms/Flagger.h  |   0
 .../Utility/Algorithms/IdealMapper.cpp        |   0
 .../Utility/Algorithms/IdealMapper.h          |   0
 .../Utility/Algorithms/LinearMapper.cpp       |   0
 .../Utility/Algorithms/LinearMapper.h         |   0
 .../Utility/Algorithms/MapIntegrator.cpp      |   0
 .../Utility/Algorithms/MapIntegrator.h        |   0
 .../twostream-1/Utility/Algorithms/Mapper.cpp |   0
 .../twostream-1/Utility/Algorithms/Mapper.h   |   0
 .../Utility/Algorithms/OrbitTracker.cpp       |   0
 .../Utility/Algorithms/OrbitTracker.h         |   0
 .../Utility/Algorithms/PartBunch.cpp          |   0
 .../Utility/Algorithms/PartBunch.h            |   0
 .../Utility/Algorithms/PartData.cpp           |   0
 .../twostream-1/Utility/Algorithms/PartData.h |   0
 .../Utility/Algorithms/Particle.cpp           |   0
 .../twostream-1/Utility/Algorithms/Particle.h |   0
 .../Utility/Algorithms/Surveyor.cpp           |   0
 .../twostream-1/Utility/Algorithms/Surveyor.h |   0
 .../Utility/Algorithms/ThinMapper.cpp         |   0
 .../Utility/Algorithms/ThinMapper.h           |   0
 .../Utility/Algorithms/ThinTracker.cpp        |   0
 .../Utility/Algorithms/ThinTracker.h          |   0
 .../Utility/Algorithms/TrackIntegrator.cpp    |   0
 .../Utility/Algorithms/TrackIntegrator.h      |   0
 .../Utility/Algorithms/Tracker.cpp            |   0
 .../twostream-1/Utility/Algorithms/Tracker.h  |   0
 .../twostream-1/Utility/Algorithms/rbendmap.h |   0
 .../Utility/MemoryManagement/OwnPtr.h         |   0
 .../Utility/MemoryManagement/Pointer.h        |   0
 .../Utility/MemoryManagement/RCObject.h       |   0
 .../Utility/Parser/AbsFileStream.cpp          |   0
 .../Utility/Parser/AbsFileStream.h            |   0
 .../Utility/Parser/ClassicParser.cpp          |   0
 .../Utility/Parser/ClassicParser.h            |   0
 .../twostream-1/Utility/Parser/FileStream.cpp |   0
 .../twostream-1/Utility/Parser/FileStream.h   |   0
 .../twostream-1/Utility/Parser/Parser.cpp     |   0
 ippl/test/twostream-1/Utility/Parser/Parser.h |   0
 .../Utility/Parser/SimpleStatement.cpp        |   0
 .../Utility/Parser/SimpleStatement.h          |   0
 .../twostream-1/Utility/Parser/Statement.cpp  |   0
 .../twostream-1/Utility/Parser/Statement.h    |   0
 .../Utility/Parser/StringStream.cpp           |   0
 .../twostream-1/Utility/Parser/StringStream.h |   0
 .../Utility/Parser/TerminalStream.cpp         |   0
 .../Utility/Parser/TerminalStream.h           |   0
 .../test/twostream-1/Utility/Parser/Token.cpp |   0
 ippl/test/twostream-1/Utility/Parser/Token.h  |   0
 .../Utility/Parser/TokenStream.cpp            |   0
 .../twostream-1/Utility/Parser/TokenStream.h  |   0
 .../twostream-1/Utility/Physics/Physics.cpp   |   0
 .../twostream-1/Utility/Physics/Physics.h     |   0
 .../Utility/Utilities/ArithmeticError.cpp     |   0
 .../Utility/Utilities/ArithmeticError.h       |   0
 .../Utility/Utilities/AttributeError.cpp      |   0
 .../Utility/Utilities/AttributeError.h        |   0
 .../Utility/Utilities/ClassicException.cpp    |   0
 .../Utility/Utilities/ClassicException.h      |   0
 .../Utility/Utilities/ComplexErrorFun.cpp     |   0
 .../Utility/Utilities/ComplexErrorFun.h       |   0
 .../Utility/Utilities/ConvergenceError.cpp    |   0
 .../Utility/Utilities/ConvergenceError.h      |   0
 .../Utility/Utilities/DivideError.cpp         |   0
 .../Utility/Utilities/DivideError.h           |   0
 .../Utility/Utilities/DomainError.cpp         |   0
 .../Utility/Utilities/DomainError.h           |   0
 .../Utility/Utilities/EigenvalueError.cpp     |   0
 .../Utility/Utilities/EigenvalueError.h       |   0
 .../Utility/Utilities/FormatError.cpp         |   0
 .../Utility/Utilities/FormatError.h           |   0
 .../twostream-1/Utility/Utilities/Gauss.cpp   |   0
 .../twostream-1/Utility/Utilities/Gauss.h     |   0
 .../Utility/Utilities/InverseGauss.cpp        |   0
 .../Utility/Utilities/InverseGauss.h          |   0
 .../Utility/Utilities/LogicalError.cpp        |   0
 .../Utility/Utilities/LogicalError.h          |   0
 .../Utility/Utilities/NormalFormError.cpp     |   0
 .../Utility/Utilities/NormalFormError.h       |   0
 .../Utility/Utilities/OverflowError.cpp       |   0
 .../Utility/Utilities/OverflowError.h         |   0
 .../Utility/Utilities/ParseError.cpp          |   0
 .../Utility/Utilities/ParseError.h            |   0
 .../twostream-1/Utility/Utilities/Random.cpp  |   0
 .../twostream-1/Utility/Utilities/Random.h    |   0
 .../Utility/Utilities/RangeError.cpp          |   0
 .../Utility/Utilities/RangeError.h            |   0
 .../Utility/Utilities/SingularMatrixError.cpp |   0
 .../Utility/Utilities/SingularMatrixError.h   |   0
 .../Utility/Utilities/SizeError.cpp           |   0
 .../twostream-1/Utility/Utilities/SizeError.h |   0
 .../twostream-1/Utility/Utilities/User0.cpp   |   0
 .../twostream-1/Utility/Utilities/User1.cpp   |   0
 .../twostream-1/Utility/Utilities/User2.cpp   |   0
 ippl/test/twostream-1/anal.gpl                |   0
 ippl/test/twostream-1/anal.kumac              |   0
 ippl/test/twostream-1/analtest.gpl            |   0
 ippl/test/twostream-1/constfoc-1.inp          |   0
 ippl/test/twostream-1/data1.dat               |   0
 ippl/test/twostream-1/data2.dat               |   0
 ippl/test/twostream-1/driftsc-1.inp           |   0
 ippl/test/twostream-1/driftsc-2.inp           |   0
 ippl/test/twostream-1/test-1.inp              |   0
 ippl/test/twostream-1/test-2.inp              |   0
 ippl/test/twostream-1/twostream-2.cpp         |   0
 opt-pilot/.gitignore                          |   0
 opt-pilot/CMakeLists.txt                      |   0
 opt-pilot/Comm/CommSplitter.h                 |   0
 opt-pilot/Comm/MasterGraph/NDimMesh.h         |   0
 opt-pilot/Comm/MasterGraph/NoMasterGraph.h    |   0
 .../Comm/MasterGraph/SocialNetworkGraph.h     |   0
 opt-pilot/Comm/MasterNode.h                   |   0
 opt-pilot/Comm/Splitter/GeometricStrategy.h   |   0
 opt-pilot/Comm/Splitter/ManyMasterSplit.h     |   0
 opt-pilot/Comm/Splitter/RandomStrategy.h      |   0
 opt-pilot/Comm/Splitter/ReadSplitFromFile.h   |   0
 opt-pilot/Comm/Splitter/SplitStrategy.h       |   0
 opt-pilot/Comm/Topology/CommTopology.h        |   0
 opt-pilot/Comm/Topology/NoCommTopology.h      |   0
 opt-pilot/Comm/types.h                        |   0
 opt-pilot/Doxyfile                            |   0
 opt-pilot/Drivers/CMakeLists.txt              |   0
 opt-pilot/Drivers/pisa-opal/CMakeLists.txt    |   0
 opt-pilot/Drivers/pisa-opal/pisa-opal.cpp     |   0
 .../Drivers/pisa-standalone/CMakeLists.txt    |   0
 .../pisa-standalone/pisa-standalone.cpp       |   0
 opt-pilot/Expression/CMakeLists.txt           |   0
 opt-pilot/Expression/Expression.h             |   0
 opt-pilot/Expression/FromFile.cpp             |   0
 opt-pilot/Expression/FromFile.h               |   0
 opt-pilot/Expression/GlobalFunctions.h        |   0
 opt-pilot/Expression/Parser/annotation.hpp    |   0
 opt-pilot/Expression/Parser/ast.hpp           |   0
 opt-pilot/Expression/Parser/error_handler.hpp |   0
 opt-pilot/Expression/Parser/evaluator.cpp     |   0
 opt-pilot/Expression/Parser/evaluator.hpp     |   0
 opt-pilot/Expression/Parser/expression.cpp    |   0
 opt-pilot/Expression/Parser/expression.hpp    |   0
 .../Expression/Parser/expression_def.hpp      |   0
 opt-pilot/Expression/Parser/function.hpp      |   0
 opt-pilot/Expression/Parser/requirements.hpp  |   0
 opt-pilot/Expression/Parser/skipper.hpp       |   0
 opt-pilot/Expression/ProbeVariable.h          |   0
 opt-pilot/Expression/PythonExpr.h             |   0
 opt-pilot/Expression/RadialPeak.cpp           |   0
 opt-pilot/Expression/RadialPeak.h             |   0
 opt-pilot/Expression/SDDSVariable.h           |   0
 opt-pilot/Expression/SumErrSq.cpp             |   0
 opt-pilot/Expression/SumErrSq.h               |   0
 opt-pilot/Expression/SumErrSqRadialPeak.cpp   |   0
 opt-pilot/Expression/SumErrSqRadialPeak.h     |   0
 opt-pilot/Optimizer/EA/BlendCrossover.h       |   0
 opt-pilot/Optimizer/EA/FixedPisaNsga2.h       |   0
 opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc     |   0
 .../Optimizer/EA/IndependentBitMutation.h     |   0
 opt-pilot/Optimizer/EA/Individual.h           |   0
 .../Optimizer/EA/NaiveOnePointCrossover.h     |   0
 .../Optimizer/EA/NaiveUniformCrossover.h      |   0
 opt-pilot/Optimizer/EA/OneBitMutation.h       |   0
 opt-pilot/Optimizer/EA/Population.h           |   0
 .../Optimizer/EA/SimulatedBinaryCrossover.h   |   0
 opt-pilot/Optimizer/EA/Variator.h             |   0
 opt-pilot/Optimizer/Optimizer.h               |   0
 opt-pilot/Pilot/Pilot.h                       |   0
 opt-pilot/Pilot/Poller.h                      |   0
 opt-pilot/Pilot/Worker.h                      |   0
 opt-pilot/Problems/FON.h                      |   0
 opt-pilot/Problems/ProblemInterface.h         |   0
 opt-pilot/README.mkd                          |   0
 opt-pilot/Simulation/FunctionEvaluator.cpp    |   0
 opt-pilot/Simulation/FunctionEvaluator.h      |   0
 opt-pilot/Simulation/GenerateOpalSimulation.h |   0
 opt-pilot/Simulation/Simulation.h             |   0
 opt-pilot/Tests/CMakeLists.txt                |   0
 opt-pilot/Tests/CmdArgumentsTest.cpp          |   0
 opt-pilot/Tests/ExpressionTest.cpp            |   0
 opt-pilot/Tests/FromFileExpressionTest.cpp    |   0
 opt-pilot/Tests/HashNameGeneratorTest.cpp     |   0
 opt-pilot/Tests/Homotopy/Problem.in           |   0
 opt-pilot/Tests/IndividualTest.cpp            |   0
 opt-pilot/Tests/MPIHelperTest.cpp             |   0
 opt-pilot/Tests/ManagedIDsTest.cpp            |   0
 opt-pilot/Tests/Opal/FiPha3Opt1.data          |   0
 opt-pilot/Tests/Opal/FiPha3Opt1.tmpl          |   0
 .../fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat |   0
 .../NEW_SINGLE_SOL_NOFRINGE_OPAL.dat          |   0
 opt-pilot/Tests/Opal/nsga2/nsga2_param.txt    |   0
 opt-pilot/Tests/OpalInputFileParserTest.cpp   |   0
 opt-pilot/Tests/PisaStandAlone/Problem.in     |   0
 .../PisaStandAlone/nsga2/nsga2_param.txt      |   0
 opt-pilot/Tests/PopulationTest.cpp            |   0
 opt-pilot/Tests/PythonExprTest.cpp            |   0
 opt-pilot/Tests/SDDSParserTest.cpp            |   0
 opt-pilot/Tests/SumErrSqExpressionTest.cpp    |   0
 opt-pilot/Tests/generatesim.cpp               |   0
 opt-pilot/Tests/gentest.data                  |   0
 opt-pilot/Tests/gentest.tmpl                  |   0
 opt-pilot/Tests/resources/fromfile_test.dat   |   0
 opt-pilot/Tests/resources/fromfile_test2.dat  |   0
 .../Tests/resources/measurement_test.dat      |   0
 opt-pilot/Tests/resources/test.in             |   0
 opt-pilot/Tests/resources/test.py             |   0
 opt-pilot/Tests/resources/test.stat           |   0
 opt-pilot/Tests/runsim.cpp                    |   0
 opt-pilot/Tests/schedsim.cpp                  |   0
 opt-pilot/Util/AsyncSendBuffers.h             |   0
 opt-pilot/Util/CMakeLists.txt                 |   0
 opt-pilot/Util/CmdArguments.cpp               |   0
 opt-pilot/Util/CmdArguments.h                 |   0
 .../Util/CommentAnnotatedInputFileParser.cpp  |   0
 .../Util/CommentAnnotatedInputFileParser.h    |   0
 opt-pilot/Util/HashNameGenerator.h            |   0
 opt-pilot/Util/InputFileParser.h              |   0
 opt-pilot/Util/MPIHelper.cpp                  |   0
 opt-pilot/Util/MPIHelper.h                    |   0
 opt-pilot/Util/ManagedIDs.h                   |   0
 opt-pilot/Util/OpalInputFileParser.h          |   0
 opt-pilot/Util/OptPilotException.h            |   0
 opt-pilot/Util/PeakReader.cpp                 |   0
 opt-pilot/Util/PeakReader.h                   |   0
 opt-pilot/Util/PlainInputFileParser.h         |   0
 opt-pilot/Util/ProbeReader.cpp                |   0
 opt-pilot/Util/ProbeReader.h                  |   0
 opt-pilot/Util/SDDSParser.cpp                 |   0
 opt-pilot/Util/SDDSParser.h                   |   0
 .../Util/SDDSParser/SDDSParserException.h     |   0
 opt-pilot/Util/SDDSParser/array.cpp           |   0
 opt-pilot/Util/SDDSParser/array.hpp           |   0
 opt-pilot/Util/SDDSParser/array_def.hpp       |   0
 opt-pilot/Util/SDDSParser/associate.cpp       |   0
 opt-pilot/Util/SDDSParser/associate.hpp       |   0
 opt-pilot/Util/SDDSParser/associate_def.hpp   |   0
 opt-pilot/Util/SDDSParser/ast.cpp             |   0
 opt-pilot/Util/SDDSParser/ast.hpp             |   0
 opt-pilot/Util/SDDSParser/ast_def.hpp         |   0
 opt-pilot/Util/SDDSParser/column.cpp          |   0
 opt-pilot/Util/SDDSParser/column.hpp          |   0
 opt-pilot/Util/SDDSParser/column_def.hpp      |   0
 opt-pilot/Util/SDDSParser/data.cpp            |   0
 opt-pilot/Util/SDDSParser/data.hpp            |   0
 opt-pilot/Util/SDDSParser/data_def.hpp        |   0
 opt-pilot/Util/SDDSParser/description.cpp     |   0
 opt-pilot/Util/SDDSParser/description.hpp     |   0
 opt-pilot/Util/SDDSParser/description_def.hpp |   0
 opt-pilot/Util/SDDSParser/error_handler.hpp   |   0
 opt-pilot/Util/SDDSParser/file.cpp            |   0
 opt-pilot/Util/SDDSParser/file.hpp            |   0
 opt-pilot/Util/SDDSParser/file_def.hpp        |   0
 opt-pilot/Util/SDDSParser/include.cpp         |   0
 opt-pilot/Util/SDDSParser/include.hpp         |   0
 opt-pilot/Util/SDDSParser/include_def.hpp     |   0
 opt-pilot/Util/SDDSParser/parameter.cpp       |   0
 opt-pilot/Util/SDDSParser/parameter.hpp       |   0
 opt-pilot/Util/SDDSParser/parameter_def.hpp   |   0
 opt-pilot/Util/SDDSParser/skipper.hpp         |   0
 opt-pilot/Util/SDDSParser/version.cpp         |   0
 opt-pilot/Util/SDDSParser/version.hpp         |   0
 opt-pilot/Util/SDDSParser/version_def.hpp     |   0
 opt-pilot/Util/SDDSReader.h                   |   0
 opt-pilot/Util/Statistics.h                   |   0
 opt-pilot/Util/Trace/CoutSink.h               |   0
 opt-pilot/Util/Trace/FileSink.h               |   0
 opt-pilot/Util/Trace/MyPid.h                  |   0
 opt-pilot/Util/Trace/Timestamp.h              |   0
 opt-pilot/Util/Trace/Trace.h                  |   0
 opt-pilot/Util/Trace/TraceComponent.h         |   0
 opt-pilot/Util/Types.h                        |   0
 opt-pilot/config.h.in                         |   0
 opt-pilot/extlib/CMakeLists.txt               |   0
 opt-pilot/extlib/nsga2/PISA_cfg               |   0
 opt-pilot/extlib/nsga2/nsga2.c                |   0
 opt-pilot/extlib/nsga2/nsga2.h                |   0
 .../extlib/nsga2/nsga2_documentation.txt      |   0
 opt-pilot/extlib/nsga2/nsga2_functions.c      |   0
 opt-pilot/extlib/nsga2/nsga2_io.c             |   0
 opt-pilot/extlib/nsga2/nsga2_param.txt        |   0
 opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT |   0
 opt-pilot/extlib/wfgHypervolume/LICENSE       |   0
 opt-pilot/extlib/wfgHypervolume/README.TXT    |   0
 opt-pilot/extlib/wfgHypervolume/avl.h         |   0
 opt-pilot/extlib/wfgHypervolume/wfg.h         |   0
 src/AbstractObjects/Action.cpp                |   0
 src/AbstractObjects/Action.h                  |   0
 src/AbstractObjects/Attribute.cpp             |   0
 src/AbstractObjects/Attribute.h               |   0
 src/AbstractObjects/AttributeBase.cpp         |   0
 src/AbstractObjects/AttributeBase.h           |   0
 src/AbstractObjects/AttributeHandler.cpp      |   0
 src/AbstractObjects/AttributeHandler.h        |   0
 src/AbstractObjects/BeamSequence.cpp          |   0
 src/AbstractObjects/BeamSequence.h            |   0
 src/AbstractObjects/CMakeLists.txt            |   0
 src/AbstractObjects/Definition.cpp            |   0
 src/AbstractObjects/Definition.h              |   0
 src/AbstractObjects/Directory.cpp             |   0
 src/AbstractObjects/Directory.h               |   0
 src/AbstractObjects/Editor.cpp                |   0
 src/AbstractObjects/Editor.h                  |   0
 src/AbstractObjects/Element.cpp               |   0
 src/AbstractObjects/Element.h                 |   0
 src/AbstractObjects/Expressions.h             |   0
 src/AbstractObjects/Invalidator.cpp           |   0
 src/AbstractObjects/Invalidator.h             |   0
 src/AbstractObjects/Object.cpp                |   0
 src/AbstractObjects/Object.h                  |   0
 src/AbstractObjects/ObjectFunction.cpp        |   0
 src/AbstractObjects/ObjectFunction.h          |   0
 src/AbstractObjects/OpalData.cpp              |   0
 src/AbstractObjects/OpalData.h                |   0
 src/AbstractObjects/PlaceRep.cpp              |   0
 src/AbstractObjects/PlaceRep.h                |   0
 src/AbstractObjects/RangeRep.cpp              |   0
 src/AbstractObjects/RangeRep.h                |   0
 src/AbstractObjects/Table.cpp                 |   0
 src/AbstractObjects/Table.h                   |   0
 src/AbstractObjects/TableRowRep.cpp           |   0
 src/AbstractObjects/TableRowRep.h             |   0
 src/AbstractObjects/ValueDefinition.cpp       |   0
 src/AbstractObjects/ValueDefinition.h         |   0
 src/Algebra/CMakeLists.txt                    |   0
 src/Algebra/QRSolver.cpp                      |   0
 src/Algebra/QRSolver.h                        |   0
 src/Algorithms/AutophaseTracker.cpp           |   0
 src/Algorithms/AutophaseTracker.h             |   0
 src/Algorithms/BeamBeam3D.cpp                 |   0
 src/Algorithms/BeamBeam3D.h                   |   0
 src/Algorithms/CMakeLists.txt                 |   0
 src/Algorithms/CavityAutophaser.cpp           |   0
 src/Algorithms/CavityAutophaser.h             |   0
 src/Algorithms/Ctunes.h                       |   0
 src/Algorithms/Ctunes.hpp                     |   0
 src/Algorithms/IndexMap.cpp                   |   0
 src/Algorithms/IndexMap.h                     |   0
 src/Algorithms/LieMapper.cpp                  |   0
 src/Algorithms/LieMapper.h                    |   0
 src/Algorithms/MPSplitIntegrator.cpp          |   0
 src/Algorithms/MPSplitIntegrator.h            |   0
 src/Algorithms/NilTracker.cpp                 |   0
 src/Algorithms/NilTracker.h                   |   0
 src/Algorithms/OrbitThreader.cpp              |   0
 src/Algorithms/OrbitThreader.h                |   0
 src/Algorithms/ParallelCyclotronTracker.cpp   |   0
 src/Algorithms/ParallelCyclotronTracker.h     |   0
 src/Algorithms/ParallelSliceTracker.cpp       |   0
 src/Algorithms/ParallelSliceTracker.h         |   0
 src/Algorithms/ParallelTTracker.cpp           |   0
 src/Algorithms/ParallelTTracker.h             |   0
 src/Algorithms/StatisticalErrors.cpp          |   0
 src/Algorithms/StatisticalErrors.h            |   0
 src/Algorithms/StatisticalErrorsUtilities.cpp |   0
 src/Algorithms/StatisticalErrorsUtilities.h   |   0
 src/Algorithms/ThickMapper.cpp                |   0
 src/Algorithms/ThickMapper.h                  |   0
 src/Algorithms/ThickTracker.cpp               |   0
 src/Algorithms/ThickTracker.h                 |   0
 src/Algorithms/TransportMapper.cpp            |   0
 src/Algorithms/TransportMapper.h              |   0
 src/Algorithms/bet/BetError.cpp               |   0
 src/Algorithms/bet/BetError.h                 |   0
 src/Algorithms/bet/EnvelopeBunch.cpp          |   0
 src/Algorithms/bet/EnvelopeBunch.h            |   0
 src/Algorithms/bet/EnvelopeSlice.cpp          |   0
 src/Algorithms/bet/EnvelopeSlice.h            |   0
 src/Algorithms/bet/error.cpp                  |   0
 src/Algorithms/bet/error.h                    |   0
 src/Algorithms/bet/math/functions.cpp         |   0
 src/Algorithms/bet/math/functions.h           |   0
 src/Algorithms/bet/math/integrate.cpp         |   0
 src/Algorithms/bet/math/integrate.h           |   0
 src/Algorithms/bet/math/interpol.cpp          |   0
 src/Algorithms/bet/math/interpol.h            |   0
 src/Algorithms/bet/math/linfit.cpp            |   0
 src/Algorithms/bet/math/linfit.h              |   0
 src/Algorithms/bet/math/rk.cpp                |   0
 src/Algorithms/bet/math/rk.h                  |   0
 src/Algorithms/bet/math/root.cpp              |   0
 src/Algorithms/bet/math/root.h                |   0
 src/Algorithms/bet/math/savgol.cpp            |   0
 src/Algorithms/bet/math/savgol.h              |   0
 src/Algorithms/bet/math/sort.cpp              |   0
 src/Algorithms/bet/math/sort.h                |   0
 src/Algorithms/bet/math/svdfit.cpp            |   0
 src/Algorithms/bet/math/svdfit.h              |   0
 src/Algorithms/bet/profile.cpp                |   0
 src/Algorithms/bet/profile.h                  |   0
 src/Algorithms/lomb.h                         |   0
 src/Algorithms/lomb.hpp                       |   0
 src/Amr/AbstractAmrWriter.h                   |   0
 src/Amr/AmrBoxLib.cpp                         |   0
 src/Amr/AmrBoxLib.h                           |   0
 src/Amr/AmrBoxLib_F.h                         |   0
 src/Amr/AmrDefs.h                             |   0
 src/Amr/AmrObject.cpp                         |   0
 src/Amr/AmrObject.h                           |   0
 src/Amr/AmrPythonWriter.cpp                   |   0
 src/Amr/AmrPythonWriter.h                     |   0
 src/Amr/AmrSliceWriter.cpp                    |   0
 src/Amr/AmrSliceWriter.h                      |   0
 src/Amr/AmrYtWriter.cpp                       |   0
 src/Amr/AmrYtWriter.h                         |   0
 src/Amr/BoxLibLayout.h                        |   0
 src/Amr/BoxLibLayout.hpp                      |   0
 src/Amr/BoxLibParticle.h                      |   0
 src/Amr/BoxLibParticle.hpp                    |   0
 src/Amr/CMakeLists.txt                        |   0
 src/Amr/Tagging_nd.f90                        |   0
 src/Aperture/Aperture.cpp                     |   0
 src/Aperture/Aperture.h                       |   0
 src/Aperture/CMakeLists.txt                   |   0
 src/Aperture/Split.cpp                        |   0
 src/Aperture/Split.h                          |   0
 src/Attributes/Attributes.cpp                 |   0
 src/Attributes/Attributes.h                   |   0
 src/Attributes/Bool.cpp                       |   0
 src/Attributes/Bool.h                         |   0
 src/Attributes/BoolArray.cpp                  |   0
 src/Attributes/BoolArray.h                    |   0
 src/Attributes/CMakeLists.txt                 |   0
 src/Attributes/Place.cpp                      |   0
 src/Attributes/Place.h                        |   0
 src/Attributes/Range.cpp                      |   0
 src/Attributes/Range.h                        |   0
 src/Attributes/Real.cpp                       |   0
 src/Attributes/Real.h                         |   0
 src/Attributes/RealArray.cpp                  |   0
 src/Attributes/RealArray.h                    |   0
 src/Attributes/Reference.cpp                  |   0
 src/Attributes/Reference.h                    |   0
 src/Attributes/StringArray.cpp                |   0
 src/Attributes/StringArray.h                  |   0
 src/Attributes/TableRow.cpp                   |   0
 src/Attributes/TableRow.h                     |   0
 src/Attributes/TokenList.cpp                  |   0
 src/Attributes/TokenList.h                    |   0
 src/Attributes/TokenListArray.cpp             |   0
 src/Attributes/TokenListArray.h               |   0
 src/Attributes/opalstr.cpp                    |   0
 src/Attributes/opalstr.h                      |   0
 src/BasicActions/CMakeLists.txt               |   0
 src/BasicActions/Call.cpp                     |   0
 src/BasicActions/Call.h                       |   0
 src/BasicActions/Dump.cpp                     |   0
 src/BasicActions/Dump.h                       |   0
 src/BasicActions/DumpEMFields.cpp             |   0
 src/BasicActions/DumpEMFields.h               |   0
 src/BasicActions/DumpFields.cpp               |   0
 src/BasicActions/DumpFields.h                 |   0
 src/BasicActions/Echo.cpp                     |   0
 src/BasicActions/Echo.h                       |   0
 src/BasicActions/Help.cpp                     |   0
 src/BasicActions/Help.h                       |   0
 src/BasicActions/Option.cpp                   |   0
 src/BasicActions/Option.h                     |   0
 src/BasicActions/PSystem.cpp                  |   0
 src/BasicActions/PSystem.h                    |   0
 src/BasicActions/Quit.cpp                     |   0
 src/BasicActions/Quit.h                       |   0
 src/BasicActions/Save.cpp                     |   0
 src/BasicActions/Save.h                       |   0
 src/BasicActions/Select.cpp                   |   0
 src/BasicActions/Select.h                     |   0
 src/BasicActions/Show.cpp                     |   0
 src/BasicActions/Show.h                       |   0
 src/BasicActions/Stop.cpp                     |   0
 src/BasicActions/Stop.h                       |   0
 src/BasicActions/System.cpp                   |   0
 src/BasicActions/System.h                     |   0
 src/BasicActions/Title.cpp                    |   0
 src/BasicActions/Title.h                      |   0
 src/BasicActions/Value.cpp                    |   0
 src/BasicActions/Value.h                      |   0
 src/BasicActions/What.cpp                     |   0
 src/BasicActions/What.h                       |   0
 src/CMakeLists.txt                            |   0
 src/Classic/AbsBeamline/AlignWrapper.cpp      |   0
 src/Classic/AbsBeamline/AlignWrapper.h        |   0
 src/Classic/AbsBeamline/AttributeSet.cpp      |   0
 src/Classic/AbsBeamline/AttributeSet.h        |   0
 src/Classic/AbsBeamline/BeamBeam.cpp          |   0
 src/Classic/AbsBeamline/BeamBeam.h            |   0
 src/Classic/AbsBeamline/BeamlineVisitor.cpp   |   0
 src/Classic/AbsBeamline/BeamlineVisitor.h     |   0
 src/Classic/AbsBeamline/Bend.cpp              |   0
 src/Classic/AbsBeamline/Bend.h                |   0
 src/Classic/AbsBeamline/BendBase.cpp          |   0
 src/Classic/AbsBeamline/BendBase.h            |   0
 src/Classic/AbsBeamline/CMakeLists.txt        |   0
 src/Classic/AbsBeamline/Collimator.cpp        |   0
 src/Classic/AbsBeamline/Collimator.h          |   0
 src/Classic/AbsBeamline/Component.cpp         |   0
 src/Classic/AbsBeamline/Component.h           |   0
 src/Classic/AbsBeamline/Corrector.cpp         |   0
 src/Classic/AbsBeamline/Corrector.h           |   0
 src/Classic/AbsBeamline/Cyclotron.cpp         |   0
 src/Classic/AbsBeamline/Cyclotron.h           |   0
 src/Classic/AbsBeamline/CyclotronValley.cpp   |   0
 src/Classic/AbsBeamline/CyclotronValley.h     |   0
 src/Classic/AbsBeamline/Degrader.cpp          |   0
 src/Classic/AbsBeamline/Degrader.h            |   0
 src/Classic/AbsBeamline/Diagnostic.cpp        |   0
 src/Classic/AbsBeamline/Diagnostic.h          |   0
 src/Classic/AbsBeamline/Drift.cpp             |   0
 src/Classic/AbsBeamline/Drift.h               |   0
 src/Classic/AbsBeamline/ElementBase.cpp       |   0
 src/Classic/AbsBeamline/ElementBase.h         |   0
 src/Classic/AbsBeamline/ElementImage.cpp      |   0
 src/Classic/AbsBeamline/ElementImage.h        |   0
 .../AbsBeamline/EndFieldModel/CMakeLists.txt  |   0
 .../EndFieldModel/EndFieldModel.cpp           |   0
 .../AbsBeamline/EndFieldModel/EndFieldModel.h |   0
 .../AbsBeamline/EndFieldModel/Enge.cpp        |   0
 src/Classic/AbsBeamline/EndFieldModel/Enge.h  |   0
 .../AbsBeamline/EndFieldModel/Tanh.cpp        |   0
 src/Classic/AbsBeamline/EndFieldModel/Tanh.h  |   0
 src/Classic/AbsBeamline/Integrator.cpp        |   0
 src/Classic/AbsBeamline/Integrator.h          |   0
 src/Classic/AbsBeamline/Lambertson.cpp        |   0
 src/Classic/AbsBeamline/Lambertson.h          |   0
 src/Classic/AbsBeamline/Marker.cpp            |   0
 src/Classic/AbsBeamline/Marker.h              |   0
 src/Classic/AbsBeamline/Monitor.cpp           |   0
 src/Classic/AbsBeamline/Monitor.h             |   0
 src/Classic/AbsBeamline/Multipole.cpp         |   0
 src/Classic/AbsBeamline/Multipole.h           |   0
 src/Classic/AbsBeamline/MultipoleT.cpp        |   0
 src/Classic/AbsBeamline/MultipoleT.h          |   0
 src/Classic/AbsBeamline/MultipoleT.png        | Bin
 src/Classic/AbsBeamline/Offset.cpp            |   0
 src/Classic/AbsBeamline/Offset.h              |   0
 src/Classic/AbsBeamline/ParallelPlate.cpp     |   0
 src/Classic/AbsBeamline/ParallelPlate.h       |   0
 src/Classic/AbsBeamline/Patch.cpp             |   0
 src/Classic/AbsBeamline/Patch.h               |   0
 src/Classic/AbsBeamline/Probe.cpp             |   0
 src/Classic/AbsBeamline/Probe.h               |   0
 src/Classic/AbsBeamline/RBend.cpp             |   0
 src/Classic/AbsBeamline/RBend.h               |   0
 src/Classic/AbsBeamline/RBend3D.cpp           |   0
 src/Classic/AbsBeamline/RBend3D.h             |   0
 src/Classic/AbsBeamline/RFCavity.cpp          |   0
 src/Classic/AbsBeamline/RFCavity.h            |   0
 src/Classic/AbsBeamline/RFQuadrupole.cpp      |   0
 src/Classic/AbsBeamline/RFQuadrupole.h        |   0
 src/Classic/AbsBeamline/Ring.cpp              |   0
 src/Classic/AbsBeamline/Ring.h                |   0
 src/Classic/AbsBeamline/SBend.cpp             |   0
 src/Classic/AbsBeamline/SBend.h               |   0
 src/Classic/AbsBeamline/SBend3D.cpp           |   0
 src/Classic/AbsBeamline/SBend3D.h             |   0
 src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp |   0
 src/Classic/AbsBeamline/ScalingFFAGMagnet.h   |   0
 .../AbsBeamline/SectorFieldMapComponent.h     |   0
 src/Classic/AbsBeamline/Separator.cpp         |   0
 src/Classic/AbsBeamline/Separator.h           |   0
 src/Classic/AbsBeamline/Septum.cpp            |   0
 src/Classic/AbsBeamline/Septum.h              |   0
 src/Classic/AbsBeamline/Solenoid.cpp          |   0
 src/Classic/AbsBeamline/Solenoid.h            |   0
 src/Classic/AbsBeamline/Source.cpp            |   0
 src/Classic/AbsBeamline/Source.h              |   0
 .../AbsBeamline/SpecificElementVisitor.h      |   0
 src/Classic/AbsBeamline/Stripper.cpp          |   0
 src/Classic/AbsBeamline/Stripper.h            |   0
 src/Classic/AbsBeamline/TravelingWave.cpp     |   0
 src/Classic/AbsBeamline/TravelingWave.h       |   0
 src/Classic/AbsBeamline/VariableRFCavity.cpp  |   0
 src/Classic/AbsBeamline/VariableRFCavity.h    |   0
 src/Classic/AbsBeamline/multipole_t.tex       |   0
 src/Classic/Algebra/Array1D.h                 |   0
 src/Classic/Algebra/Array2D.h                 |   0
 src/Classic/Algebra/CMakeLists.txt            |   0
 src/Classic/Algebra/ComplexEigen.cpp          |   0
 src/Classic/Algebra/ComplexEigen.h            |   0
 src/Classic/Algebra/DoubleEigen.cpp           |   0
 src/Classic/Algebra/DoubleEigen.h             |   0
 src/Classic/Algebra/DynamicFixedPoint.cpp     |   0
 src/Classic/Algebra/DynamicFixedPoint.h       |   0
 src/Classic/Algebra/LUMatrix.h                |   0
 src/Classic/Algebra/LieMap.h                  |   0
 src/Classic/Algebra/Matrix.h                  |   0
 src/Classic/Algebra/NormalForm.cpp            |   0
 src/Classic/Algebra/NormalForm.h              |   0
 src/Classic/Algebra/SliceIterator.h           |   0
 src/Classic/Algebra/StaticFixedPoint.cpp      |   0
 src/Classic/Algebra/StaticFixedPoint.h        |   0
 src/Classic/Algebra/Tps.cpp                   |   0
 src/Classic/Algebra/Tps.h                     |   0
 src/Classic/Algebra/TpsComplex.cpp            |   0
 src/Classic/Algebra/TpsData.cpp               |   0
 src/Classic/Algebra/TpsData.h                 |   0
 src/Classic/Algebra/TpsDouble.cpp             |   0
 src/Classic/Algebra/TpsMath.h                 |   0
 src/Classic/Algebra/TpsMonomial.cpp           |   0
 src/Classic/Algebra/TpsMonomial.h             |   0
 src/Classic/Algebra/TpsSubstitution.h         |   0
 src/Classic/Algebra/TpsTps.cpp                |   0
 src/Classic/Algebra/Vector.h                  |   0
 src/Classic/Algebra/Vps.cpp                   |   0
 src/Classic/Algebra/Vps.h                     |   0
 src/Classic/Algebra/VpsInvMap.h               |   0
 src/Classic/Algebra/VpsMap.h                  |   0
 src/Classic/Algorithms/AbstractMapper.cpp     |   0
 src/Classic/Algorithms/AbstractMapper.h       |   0
 .../Algorithms/AbstractTimeDependence.cpp     |   0
 .../Algorithms/AbstractTimeDependence.h       |   0
 src/Classic/Algorithms/AbstractTracker.cpp    |   0
 src/Classic/Algorithms/AbstractTracker.h      |   0
 src/Classic/Algorithms/AmrPartBunch.cpp       |   0
 src/Classic/Algorithms/AmrPartBunch.h         |   0
 src/Classic/Algorithms/CMakeLists.txt         |   0
 .../Algorithms/CoordinateSystemTrafo.cpp      |   0
 .../Algorithms/CoordinateSystemTrafo.h        |   0
 src/Classic/Algorithms/DefaultVisitor.cpp     |   0
 src/Classic/Algorithms/DefaultVisitor.h       |   0
 src/Classic/Algorithms/Flagger.cpp            |   0
 src/Classic/Algorithms/Flagger.h              |   0
 src/Classic/Algorithms/IdealMapper.cpp        |   0
 src/Classic/Algorithms/IdealMapper.h          |   0
 src/Classic/Algorithms/LinearMapper.cpp       |   0
 src/Classic/Algorithms/LinearMapper.h         |   0
 src/Classic/Algorithms/ListElem.h             |   0
 src/Classic/Algorithms/MapIntegrator.cpp      |   0
 src/Classic/Algorithms/MapIntegrator.h        |   0
 src/Classic/Algorithms/Mapper.cpp             |   0
 src/Classic/Algorithms/Mapper.h               |   0
 src/Classic/Algorithms/OpalParticle.cpp       |   0
 src/Classic/Algorithms/OpalParticle.h         |   0
 src/Classic/Algorithms/OrbitTracker.cpp       |   0
 src/Classic/Algorithms/OrbitTracker.h         |   0
 src/Classic/Algorithms/PBunchDefs.h           |   0
 src/Classic/Algorithms/PartBins.cpp           |   0
 src/Classic/Algorithms/PartBins.h             |   0
 src/Classic/Algorithms/PartBinsCyc.cpp        |   0
 src/Classic/Algorithms/PartBinsCyc.h          |   0
 src/Classic/Algorithms/PartBunch.cpp          |   0
 src/Classic/Algorithms/PartBunch.h            |   0
 src/Classic/Algorithms/PartBunchBase.h        |   0
 src/Classic/Algorithms/PartBunchBase.hpp      |   0
 src/Classic/Algorithms/PartData.cpp           |   0
 src/Classic/Algorithms/PartData.h             |   0
 .../Algorithms/PolynomialTimeDependence.cpp   |   0
 .../Algorithms/PolynomialTimeDependence.h     |   0
 src/Classic/Algorithms/Quaternion.cpp         |   0
 src/Classic/Algorithms/Quaternion.h           |   0
 src/Classic/Algorithms/Surveyor.cpp           |   0
 src/Classic/Algorithms/Surveyor.h             |   0
 src/Classic/Algorithms/ThinMapper.cpp         |   0
 src/Classic/Algorithms/ThinMapper.h           |   0
 src/Classic/Algorithms/ThinTracker.cpp        |   0
 src/Classic/Algorithms/ThinTracker.h          |   0
 src/Classic/Algorithms/TrackIntegrator.cpp    |   0
 src/Classic/Algorithms/TrackIntegrator.h      |   0
 src/Classic/Algorithms/Tracker.cpp            |   0
 src/Classic/Algorithms/Tracker.h              |   0
 src/Classic/Algorithms/Vektor.h               |   0
 src/Classic/Algorithms/rbendmap.h             |   0
 src/Classic/BeamlineCore/BeamBeamRep.cpp      |   0
 src/Classic/BeamlineCore/BeamBeamRep.h        |   0
 src/Classic/BeamlineCore/CMakeLists.txt       |   0
 src/Classic/BeamlineCore/CollimatorRep.cpp    |   0
 src/Classic/BeamlineCore/CollimatorRep.h      |   0
 src/Classic/BeamlineCore/CorrectorRep.cpp     |   0
 src/Classic/BeamlineCore/CorrectorRep.h       |   0
 src/Classic/BeamlineCore/CyclotronRep.cpp     |   0
 src/Classic/BeamlineCore/CyclotronRep.h       |   0
 .../BeamlineCore/CyclotronValleyRep.cpp       |   0
 src/Classic/BeamlineCore/CyclotronValleyRep.h |   0
 src/Classic/BeamlineCore/DegraderRep.cpp      |   0
 src/Classic/BeamlineCore/DegraderRep.h        |   0
 src/Classic/BeamlineCore/DriftRep.cpp         |   0
 src/Classic/BeamlineCore/DriftRep.h           |   0
 src/Classic/BeamlineCore/MarkerRep.cpp        |   0
 src/Classic/BeamlineCore/MarkerRep.h          |   0
 src/Classic/BeamlineCore/MonitorRep.cpp       |   0
 src/Classic/BeamlineCore/MonitorRep.h         |   0
 src/Classic/BeamlineCore/MultipoleRep.cpp     |   0
 src/Classic/BeamlineCore/MultipoleRep.h       |   0
 src/Classic/BeamlineCore/Octupole.cpp         |   0
 src/Classic/BeamlineCore/Octupole.h           |   0
 src/Classic/BeamlineCore/ParallelPlateRep.cpp |   0
 src/Classic/BeamlineCore/ParallelPlateRep.h   |   0
 src/Classic/BeamlineCore/PatchRep.cpp         |   0
 src/Classic/BeamlineCore/PatchRep.h           |   0
 src/Classic/BeamlineCore/ProbeRep.cpp         |   0
 src/Classic/BeamlineCore/ProbeRep.h           |   0
 src/Classic/BeamlineCore/Quadrupole.cpp       |   0
 src/Classic/BeamlineCore/Quadrupole.h         |   0
 src/Classic/BeamlineCore/RBendRep.cpp         |   0
 src/Classic/BeamlineCore/RBendRep.h           |   0
 src/Classic/BeamlineCore/RFCavityRep.cpp      |   0
 src/Classic/BeamlineCore/RFCavityRep.h        |   0
 src/Classic/BeamlineCore/SBendRep.cpp         |   0
 src/Classic/BeamlineCore/SBendRep.h           |   0
 src/Classic/BeamlineCore/SeparatorRep.cpp     |   0
 src/Classic/BeamlineCore/SeparatorRep.h       |   0
 src/Classic/BeamlineCore/SeptumRep.cpp        |   0
 src/Classic/BeamlineCore/SeptumRep.h          |   0
 src/Classic/BeamlineCore/Sextupole.cpp        |   0
 src/Classic/BeamlineCore/Sextupole.h          |   0
 src/Classic/BeamlineCore/SingleMultipole.h    |   0
 src/Classic/BeamlineCore/SkewOctupole.cpp     |   0
 src/Classic/BeamlineCore/SkewOctupole.h       |   0
 src/Classic/BeamlineCore/SkewQuadrupole.cpp   |   0
 src/Classic/BeamlineCore/SkewQuadrupole.h     |   0
 src/Classic/BeamlineCore/SkewSextupole.cpp    |   0
 src/Classic/BeamlineCore/SkewSextupole.h      |   0
 src/Classic/BeamlineCore/SolenoidRep.cpp      |   0
 src/Classic/BeamlineCore/SolenoidRep.h        |   0
 src/Classic/BeamlineCore/SourceRep.cpp        |   0
 src/Classic/BeamlineCore/SourceRep.h          |   0
 src/Classic/BeamlineCore/StripperRep.cpp      |   0
 src/Classic/BeamlineCore/StripperRep.h        |   0
 src/Classic/BeamlineCore/TravelingWaveRep.cpp |   0
 src/Classic/BeamlineCore/TravelingWaveRep.h   |   0
 src/Classic/BeamlineCore/XCorrectorRep.cpp    |   0
 src/Classic/BeamlineCore/XCorrectorRep.h      |   0
 src/Classic/BeamlineCore/XMonitorRep.cpp      |   0
 src/Classic/BeamlineCore/XMonitorRep.h        |   0
 src/Classic/BeamlineCore/YCorrectorRep.cpp    |   0
 src/Classic/BeamlineCore/YCorrectorRep.h      |   0
 src/Classic/BeamlineCore/YMonitorRep.cpp      |   0
 src/Classic/BeamlineCore/YMonitorRep.h        |   0
 src/Classic/BeamlineGeometry/CMakeLists.txt   |   0
 src/Classic/BeamlineGeometry/Euclid3D.cpp     |   0
 src/Classic/BeamlineGeometry/Euclid3D.h       |   0
 .../BeamlineGeometry/Euclid3DGeometry.cpp     |   0
 .../BeamlineGeometry/Euclid3DGeometry.h       |   0
 src/Classic/BeamlineGeometry/Geometry.cpp     |   0
 src/Classic/BeamlineGeometry/Geometry.h       |   0
 src/Classic/BeamlineGeometry/Matrix3D.cpp     |   0
 src/Classic/BeamlineGeometry/Matrix3D.h       |   0
 src/Classic/BeamlineGeometry/NullGeometry.cpp |   0
 src/Classic/BeamlineGeometry/NullGeometry.h   |   0
 .../BeamlineGeometry/OffsetGeometry.cpp       |   0
 src/Classic/BeamlineGeometry/OffsetGeometry.h |   0
 .../BeamlineGeometry/PlanarArcGeometry.cpp    |   0
 .../BeamlineGeometry/PlanarArcGeometry.h      |   0
 .../BeamlineGeometry/RBendGeometry.cpp        |   0
 src/Classic/BeamlineGeometry/RBendGeometry.h  |   0
 src/Classic/BeamlineGeometry/Rotation3D.cpp   |   0
 src/Classic/BeamlineGeometry/Rotation3D.h     |   0
 .../BeamlineGeometry/SRotatedGeometry.cpp     |   0
 .../BeamlineGeometry/SRotatedGeometry.h       |   0
 .../BeamlineGeometry/StraightGeometry.cpp     |   0
 .../BeamlineGeometry/StraightGeometry.h       |   0
 src/Classic/BeamlineGeometry/Vector3D.cpp     |   0
 src/Classic/BeamlineGeometry/Vector3D.h       |   0
 src/Classic/Beamlines/Beamline.cpp            |   0
 src/Classic/Beamlines/Beamline.h              |   0
 src/Classic/Beamlines/BeamlineGeometry.cpp    |   0
 src/Classic/Beamlines/BeamlineGeometry.h      |   0
 src/Classic/Beamlines/CMakeLists.txt          |   0
 src/Classic/Beamlines/ElmPtr.cpp              |   0
 src/Classic/Beamlines/ElmPtr.h                |   0
 src/Classic/Beamlines/FlaggedBeamline.cpp     |   0
 src/Classic/Beamlines/FlaggedBeamline.h       |   0
 src/Classic/Beamlines/FlaggedElmPtr.cpp       |   0
 src/Classic/Beamlines/FlaggedElmPtr.h         |   0
 src/Classic/Beamlines/SimpleBeamline.cpp      |   0
 src/Classic/Beamlines/SimpleBeamline.h        |   0
 src/Classic/Beamlines/TBeamline.h             |   0
 src/Classic/CMakeLists.txt                    |   0
 src/Classic/Channels/CMakeLists.txt           |   0
 src/Classic/Channels/Channel.cpp              |   0
 src/Classic/Channels/Channel.h                |   0
 src/Classic/Channels/ConstChannel.cpp         |   0
 src/Classic/Channels/ConstChannel.h           |   0
 src/Classic/Channels/DirectChannel.h          |   0
 src/Classic/Channels/IndexedChannel.h         |   0
 src/Classic/Channels/IndirectChannel.h        |   0
 src/Classic/ComponentWrappers/CMakeLists.txt  |   0
 .../ComponentWrappers/CorrectorWrapper.cpp    |   0
 .../ComponentWrappers/CorrectorWrapper.h      |   0
 .../ComponentWrappers/CyclotronWrapper.cpp    |   0
 .../ComponentWrappers/CyclotronWrapper.h      |   0
 .../ComponentWrappers/MultipoleWrapper.cpp    |   0
 .../ComponentWrappers/MultipoleWrapper.h      |   0
 .../ComponentWrappers/RBendWrapper.cpp        |   0
 src/Classic/ComponentWrappers/RBendWrapper.h  |   0
 .../ComponentWrappers/SBendWrapper.cpp        |   0
 src/Classic/ComponentWrappers/SBendWrapper.h  |   0
 src/Classic/Construction/CMakeLists.txt       |   0
 src/Classic/Construction/ElementFactory.cpp   |   0
 src/Classic/Construction/ElementFactory.h     |   0
 src/Classic/Construction/Factory.cpp          |   0
 src/Classic/Construction/Factory.h            |   0
 src/Classic/DipoleFieldTest.cpp               |   0
 src/Classic/Fields/AcceleratingField.h        |   0
 src/Classic/Fields/Astra1DDynamic.cpp         |   0
 src/Classic/Fields/Astra1DDynamic.h           |   0
 src/Classic/Fields/Astra1DDynamic_fast.cpp    |   0
 src/Classic/Fields/Astra1DDynamic_fast.h      |   0
 src/Classic/Fields/Astra1DElectroStatic.cpp   |   0
 src/Classic/Fields/Astra1DElectroStatic.h     |   0
 .../Fields/Astra1DElectroStatic_fast.cpp      |   0
 .../Fields/Astra1DElectroStatic_fast.h        |   0
 src/Classic/Fields/Astra1DMagnetoStatic.cpp   |   0
 src/Classic/Fields/Astra1DMagnetoStatic.h     |   0
 .../Fields/Astra1DMagnetoStatic_fast.cpp      |   0
 .../Fields/Astra1DMagnetoStatic_fast.h        |   0
 src/Classic/Fields/Astra1D_fast.cpp           |   0
 src/Classic/Fields/Astra1D_fast.h             |   0
 src/Classic/Fields/BDipoleField.cpp           |   0
 src/Classic/Fields/BDipoleField.h             |   0
 src/Classic/Fields/BMultipoleField.cpp        |   0
 src/Classic/Fields/BMultipoleField.h          |   0
 src/Classic/Fields/BSingleMultipoleField.h    |   0
 src/Classic/Fields/CMakeLists.txt             |   0
 src/Classic/Fields/ConstBField.cpp            |   0
 src/Classic/Fields/ConstBField.h              |   0
 src/Classic/Fields/ConstBzField.cpp           |   0
 src/Classic/Fields/ConstBzField.h             |   0
 src/Classic/Fields/ConstEField.cpp            |   0
 src/Classic/Fields/ConstEField.h              |   0
 src/Classic/Fields/ConstEzField.cpp           |   0
 src/Classic/Fields/ConstEzField.h             |   0
 src/Classic/Fields/EDipoleField.cpp           |   0
 src/Classic/Fields/EDipoleField.h             |   0
 src/Classic/Fields/EMField.cpp                |   0
 src/Classic/Fields/EMField.h                  |   0
 src/Classic/Fields/FM1DDynamic.cpp            |   0
 src/Classic/Fields/FM1DDynamic.h              |   0
 src/Classic/Fields/FM1DDynamic_fast.cpp       |   0
 src/Classic/Fields/FM1DDynamic_fast.h         |   0
 src/Classic/Fields/FM1DElectroStatic.cpp      |   0
 src/Classic/Fields/FM1DElectroStatic.h        |   0
 src/Classic/Fields/FM1DElectroStatic_fast.cpp |   0
 src/Classic/Fields/FM1DElectroStatic_fast.h   |   0
 src/Classic/Fields/FM1DMagnetoStatic.cpp      |   0
 src/Classic/Fields/FM1DMagnetoStatic.h        |   0
 src/Classic/Fields/FM1DMagnetoStatic_fast.cpp |   0
 src/Classic/Fields/FM1DMagnetoStatic_fast.h   |   0
 src/Classic/Fields/FM1DProfile1.cpp           |   0
 src/Classic/Fields/FM1DProfile1.h             |   0
 src/Classic/Fields/FM1DProfile2.cpp           |   0
 src/Classic/Fields/FM1DProfile2.h             |   0
 src/Classic/Fields/FM2DDynamic.cpp            |   0
 src/Classic/Fields/FM2DDynamic.h              |   0
 src/Classic/Fields/FM2DElectroStatic.cpp      |   0
 src/Classic/Fields/FM2DElectroStatic.h        |   0
 src/Classic/Fields/FM2DMagnetoStatic.cpp      |   0
 src/Classic/Fields/FM2DMagnetoStatic.h        |   0
 src/Classic/Fields/FM3DDynamic.cpp            |   0
 src/Classic/Fields/FM3DDynamic.h              |   0
 src/Classic/Fields/FM3DH5Block.cpp            |   0
 src/Classic/Fields/FM3DH5Block.h              |   0
 src/Classic/Fields/FM3DH5Block_nonscale.cpp   |   0
 src/Classic/Fields/FM3DH5Block_nonscale.h     |   0
 src/Classic/Fields/FM3DMagnetoStatic.cpp      |   0
 src/Classic/Fields/FM3DMagnetoStatic.h        |   0
 .../Fields/FM3DMagnetoStaticExtended.cpp      |   0
 .../Fields/FM3DMagnetoStaticExtended.h        |   0
 .../Fields/FM3DMagnetoStaticH5Block.cpp       |   0
 src/Classic/Fields/FM3DMagnetoStaticH5Block.h |   0
 src/Classic/Fields/FMDummy.cpp                |   0
 src/Classic/Fields/FMDummy.h                  |   0
 src/Classic/Fields/Fieldmap.cpp               |   0
 src/Classic/Fields/Fieldmap.h                 |   0
 src/Classic/Fields/Fieldmap.hpp               |   0
 .../Fields/Interpolation/CMakeLists.txt       |   0
 .../Interpolation/Interpolator3dGridTo1d.cpp  |   0
 .../Interpolation/Interpolator3dGridTo1d.h    |   0
 .../Interpolation/Interpolator3dGridTo3d.cpp  |   0
 .../Interpolation/Interpolator3dGridTo3d.h    |   0
 src/Classic/Fields/Interpolation/MMatrix.cpp  |   0
 src/Classic/Fields/Interpolation/MMatrix.h    |   0
 src/Classic/Fields/Interpolation/MVector.cpp  |   0
 src/Classic/Fields/Interpolation/MVector.h    |   0
 src/Classic/Fields/Interpolation/Mesh-inl.icc |   0
 src/Classic/Fields/Interpolation/Mesh.cpp     |   0
 src/Classic/Fields/Interpolation/Mesh.h       |   0
 src/Classic/Fields/Interpolation/NDGrid.cpp   |   0
 src/Classic/Fields/Interpolation/NDGrid.h     |   0
 .../Fields/Interpolation/PPSolveFactory.cpp   |   0
 .../Fields/Interpolation/PPSolveFactory.h     |   0
 .../Interpolation/PolynomialCoefficient.cpp   |   0
 .../Interpolation/PolynomialCoefficient.h     |   0
 .../Fields/Interpolation/PolynomialPatch.cpp  |   0
 .../Fields/Interpolation/PolynomialPatch.h    |   0
 .../Fields/Interpolation/SolveFactory.cpp     |   0
 .../Fields/Interpolation/SolveFactory.h       |   0
 .../Interpolation/SquarePolynomialVector.cpp  |   0
 .../Interpolation/SquarePolynomialVector.h    |   0
 .../Fields/Interpolation/ThreeDGrid.cpp       |   0
 src/Classic/Fields/Interpolation/ThreeDGrid.h |   0
 .../Interpolation/TriLinearInterpolator.cpp   |   0
 .../Interpolation/TriLinearInterpolator.h     |   0
 src/Classic/Fields/Interpolation/TwoDGrid.cpp |   0
 src/Classic/Fields/Interpolation/TwoDGrid.h   |   0
 .../Fields/Interpolation/VectorMap.cpp        |   0
 src/Classic/Fields/Interpolation/VectorMap.h  |   0
 .../polynomial_solve_with_smoothing.tex       |   0
 src/Classic/Fields/NullField.cpp              |   0
 src/Classic/Fields/NullField.h                |   0
 src/Classic/Fields/OscillatingField.h         |   0
 src/Classic/Fields/SectorField.cpp            |   0
 src/Classic/Fields/SectorField.h              |   0
 src/Classic/Fields/SectorMagneticFieldMap.cpp |   0
 src/Classic/Fields/SectorMagneticFieldMap.h   |   0
 src/Classic/Fields/StaticElectricField.cpp    |   0
 src/Classic/Fields/StaticElectricField.h      |   0
 src/Classic/Fields/StaticMagneticField.cpp    |   0
 src/Classic/Fields/StaticMagneticField.h      |   0
 src/Classic/Filters/CMakeLists.txt            |   0
 src/Classic/Filters/Filter.h                  |   0
 src/Classic/Filters/Filters.h                 |   0
 src/Classic/Filters/FixedFFTLowPass.cpp       |   0
 src/Classic/Filters/FixedFFTLowPass.h         |   0
 src/Classic/Filters/RelativeFFTLowPass.cpp    |   0
 src/Classic/Filters/RelativeFFTLowPass.h      |   0
 src/Classic/Filters/SavitzkyGolay.cpp         |   0
 src/Classic/Filters/SavitzkyGolay.h           |   0
 src/Classic/Filters/Stencil.cpp               |   0
 src/Classic/Filters/Stencil.h                 |   0
 src/Classic/FixedAlgebra/CMakeLists.txt       |   0
 src/Classic/FixedAlgebra/DragtFinnMap.cpp     |   0
 src/Classic/FixedAlgebra/DragtFinnMap.h       |   0
 .../FixedAlgebra/DragtFinnNormalForm.h        |   0
 src/Classic/FixedAlgebra/FArray1D.h           |   0
 src/Classic/FixedAlgebra/FArray2D.h           |   0
 src/Classic/FixedAlgebra/FComplexEigen.h      |   0
 src/Classic/FixedAlgebra/FDoubleEigen.h       |   0
 src/Classic/FixedAlgebra/FDynamicFP.h         |   0
 src/Classic/FixedAlgebra/FLUMatrix.h          |   0
 src/Classic/FixedAlgebra/FLieGenerator.cpp    |   0
 src/Classic/FixedAlgebra/FLieGenerator.h      |   0
 src/Classic/FixedAlgebra/FMatrix.h            |   0
 src/Classic/FixedAlgebra/FMonomial.h          |   0
 src/Classic/FixedAlgebra/FNormalForm.h        |   0
 src/Classic/FixedAlgebra/FSlice.h             |   0
 src/Classic/FixedAlgebra/FStaticFP.h          |   0
 src/Classic/FixedAlgebra/FTps.cpp             |   0
 src/Classic/FixedAlgebra/FTps.h               |   0
 src/Classic/FixedAlgebra/FTpsData.h           |   0
 src/Classic/FixedAlgebra/FTpsMath.h           |   0
 src/Classic/FixedAlgebra/FVector.h            |   0
 src/Classic/FixedAlgebra/FVps.cpp             |   0
 src/Classic/FixedAlgebra/FVps.h               |   0
 src/Classic/FixedAlgebra/LinearFun.cpp        |   0
 src/Classic/FixedAlgebra/LinearFun.h          |   0
 src/Classic/FixedAlgebra/LinearMap.cpp        |   0
 src/Classic/FixedAlgebra/LinearMap.h          |   0
 src/Classic/FixedAlgebra/LinearMath.h         |   0
 src/Classic/FixedAlgebra/Taylor.cpp           |   0
 src/Classic/FixedAlgebra/Taylor.h             |   0
 src/Classic/FixedAlgebra/TransportFun.cpp     |   0
 src/Classic/FixedAlgebra/TransportFun.h       |   0
 src/Classic/FixedAlgebra/TransportMap.cpp     |   0
 src/Classic/FixedAlgebra/TransportMap.h       |   0
 src/Classic/FixedAlgebra/TransportMath.h      |   0
 src/Classic/Main.cpp                          |   0
 src/Classic/MemoryManagement/CMakeLists.txt   |   0
 src/Classic/MemoryManagement/OwnPtr.h         |   0
 src/Classic/MemoryManagement/Pointer.h        |   0
 src/Classic/MemoryManagement/RCObject.h       |   0
 src/Classic/Parser/AbsFileStream.cpp          |   0
 src/Classic/Parser/AbsFileStream.h            |   0
 src/Classic/Parser/CMakeLists.txt             |   0
 src/Classic/Parser/FileStream.cpp             |   0
 src/Classic/Parser/FileStream.h               |   0
 src/Classic/Parser/Parser.h                   |   0
 src/Classic/Parser/SimpleStatement.cpp        |   0
 src/Classic/Parser/SimpleStatement.h          |   0
 src/Classic/Parser/Statement.cpp              |   0
 src/Classic/Parser/Statement.h                |   0
 src/Classic/Parser/StringStream.cpp           |   0
 src/Classic/Parser/StringStream.h             |   0
 src/Classic/Parser/TerminalStream.cpp         |   0
 src/Classic/Parser/TerminalStream.h           |   0
 src/Classic/Parser/Token.cpp                  |   0
 src/Classic/Parser/Token.h                    |   0
 src/Classic/Parser/TokenStream.cpp            |   0
 src/Classic/Parser/TokenStream.h              |   0
 src/Classic/Physics/CMakeLists.txt            |   0
 src/Classic/Physics/Physics.h                 |   0
 src/Classic/ReadMe                            |   0
 src/Classic/Solvers/CMakeLists.txt            |   0
 src/Classic/Solvers/CSRIGFWakeFunction.cpp    |   0
 src/Classic/Solvers/CSRIGFWakeFunction.hh     |   0
 src/Classic/Solvers/CSRWakeFunction.cpp       |   0
 src/Classic/Solvers/CSRWakeFunction.hh        |   0
 src/Classic/Solvers/CollimatorPhysics.cpp     |   0
 src/Classic/Solvers/CollimatorPhysics.hh      |   0
 src/Classic/Solvers/GreenWakeFunction.cpp     |   0
 src/Classic/Solvers/GreenWakeFunction.hh      |   0
 .../ParticleMatterInteractionHandler.hh       |   0
 src/Classic/Solvers/TestLambda.h              |   0
 src/Classic/Solvers/WakeFunction.hh           |   0
 src/Classic/Structure/CMakeLists.txt          |   0
 src/Classic/Structure/LossDataSink.cpp        |   0
 src/Classic/Structure/LossDataSink.h          |   0
 src/Classic/Structure/MeshGenerator.cpp       |   0
 src/Classic/Structure/MeshGenerator.h         |   0
 src/Classic/Structure/PeakFinder.cpp          |   0
 src/Classic/Structure/PeakFinder.h            |   0
 src/Classic/Utilities/ArithmeticError.cpp     |   0
 src/Classic/Utilities/ArithmeticError.h       |   0
 src/Classic/Utilities/AttributeError.cpp      |   0
 src/Classic/Utilities/AttributeError.h        |   0
 src/Classic/Utilities/CLRangeError.cpp        |   0
 src/Classic/Utilities/CLRangeError.h          |   0
 src/Classic/Utilities/CMakeLists.txt          |   0
 src/Classic/Utilities/ClassicException.cpp    |   0
 src/Classic/Utilities/ClassicException.h      |   0
 src/Classic/Utilities/ClassicField.cpp        |   0
 src/Classic/Utilities/ClassicField.h          |   0
 src/Classic/Utilities/ClassicRandom.cpp       |   0
 src/Classic/Utilities/ClassicRandom.h         |   0
 src/Classic/Utilities/ComplexErrorFun.cpp     |   0
 src/Classic/Utilities/ComplexErrorFun.h       |   0
 src/Classic/Utilities/ConvergenceError.cpp    |   0
 src/Classic/Utilities/ConvergenceError.h      |   0
 src/Classic/Utilities/DivideError.cpp         |   0
 src/Classic/Utilities/DivideError.h           |   0
 src/Classic/Utilities/DomainError.cpp         |   0
 src/Classic/Utilities/DomainError.h           |   0
 src/Classic/Utilities/EigenvalueError.cpp     |   0
 src/Classic/Utilities/EigenvalueError.h       |   0
 src/Classic/Utilities/FormatError.cpp         |   0
 src/Classic/Utilities/FormatError.h           |   0
 src/Classic/Utilities/Gauss.cpp               |   0
 src/Classic/Utilities/Gauss.h                 |   0
 .../Utilities/GeneralClassicException.cpp     |   0
 .../Utilities/GeneralClassicException.h       |   0
 src/Classic/Utilities/InverseGauss.cpp        |   0
 src/Classic/Utilities/InverseGauss.h          |   0
 src/Classic/Utilities/LogicalError.cpp        |   0
 src/Classic/Utilities/LogicalError.h          |   0
 src/Classic/Utilities/NormalFormError.cpp     |   0
 src/Classic/Utilities/NormalFormError.h       |   0
 src/Classic/Utilities/OptionTypes.h           |   0
 src/Classic/Utilities/Options.cpp             |   0
 src/Classic/Utilities/Options.h               |   0
 src/Classic/Utilities/OverflowError.cpp       |   0
 src/Classic/Utilities/OverflowError.h         |   0
 src/Classic/Utilities/ParseError.cpp          |   0
 src/Classic/Utilities/ParseError.h            |   0
 src/Classic/Utilities/RingSection.cpp         |   0
 src/Classic/Utilities/RingSection.h           |   0
 src/Classic/Utilities/SingularMatrixError.cpp |   0
 src/Classic/Utilities/SingularMatrixError.h   |   0
 src/Classic/Utilities/SizeError.cpp           |   0
 src/Classic/Utilities/SizeError.h             |   0
 src/Classic/Utilities/SwitcherError.cpp       |   0
 src/Classic/Utilities/SwitcherError.h         |   0
 src/Classic/Utilities/Util.cpp                |   0
 src/Classic/Utilities/Util.h                  |   0
 src/Classic/autogen-gele.sh                   |   0
 src/Classic/autogen-palu.sh                   |   0
 src/Classic/autogen-regression.sh             |   0
 src/Classic/autogen.sh                        |   0
 src/Classic/configure.ac                      |   0
 src/Copyright.readme                          |   0
 src/Distribution/CMakeLists.txt               |   0
 src/Distribution/ClosedOrbitFinder.h          |   0
 src/Distribution/Distribution.cpp             |   0
 src/Distribution/Distribution.h               |   0
 src/Distribution/Harmonics.h                  |   0
 src/Distribution/LaserProfile.cpp             |   0
 src/Distribution/LaserProfile.h               |   0
 src/Distribution/MagneticField.cpp            |   0
 src/Distribution/MagneticField.h              |   0
 src/Distribution/MapGenerator.h               |   0
 src/Distribution/SigmaGenerator.h             |   0
 src/Distribution/halton1d_sequence.cpp        |   0
 src/Distribution/halton1d_sequence.hh         |   0
 src/Distribution/matrix_vector_operation.h    |   0
 src/Distribution/rdm.h                        |   0
 src/Editor/CMakeLists.txt                     |   0
 src/Editor/Edit.cpp                           |   0
 src/Editor/Edit.h                             |   0
 src/Editor/EditCmd.cpp                        |   0
 src/Editor/EditCmd.h                          |   0
 src/Editor/EditCycle.cpp                      |   0
 src/Editor/EditCycle.h                        |   0
 src/Editor/EditEnd.cpp                        |   0
 src/Editor/EditEnd.h                          |   0
 src/Editor/EditFlatten.cpp                    |   0
 src/Editor/EditFlatten.h                      |   0
 src/Editor/EditInstall.cpp                    |   0
 src/Editor/EditInstall.h                      |   0
 src/Editor/EditMove.cpp                       |   0
 src/Editor/EditMove.h                         |   0
 src/Editor/EditParser.cpp                     |   0
 src/Editor/EditParser.h                       |   0
 src/Editor/EditReflect.cpp                    |   0
 src/Editor/EditReflect.h                      |   0
 src/Editor/EditRemove.cpp                     |   0
 src/Editor/EditRemove.h                       |   0
 src/Editor/EditReplace.cpp                    |   0
 src/Editor/EditReplace.h                      |   0
 src/Editor/EditSelect.cpp                     |   0
 src/Editor/EditSelect.h                       |   0
 src/Elements/AttCell.cpp                      |   0
 src/Elements/AttCell.h                        |   0
 src/Elements/CMakeLists.txt                   |   0
 src/Elements/OpalBeamBeam.cpp                 |   0
 src/Elements/OpalBeamBeam.h                   |   0
 src/Elements/OpalBeamBeam3D.cpp               |   0
 src/Elements/OpalBeamBeam3D.h                 |   0
 src/Elements/OpalBeamline.cpp                 |   0
 src/Elements/OpalBeamline.h                   |   0
 src/Elements/OpalBend.cpp                     |   0
 src/Elements/OpalBend.h                       |   0
 src/Elements/OpalCCollimator.cpp              |   0
 src/Elements/OpalCCollimator.h                |   0
 src/Elements/OpalCavity.cpp                   |   0
 src/Elements/OpalCavity.h                     |   0
 src/Elements/OpalCyclotron.cpp                |   0
 src/Elements/OpalCyclotron.h                  |   0
 src/Elements/OpalCyclotronValley.cpp          |   0
 src/Elements/OpalCyclotronValley.h            |   0
 src/Elements/OpalDegrader.cpp                 |   0
 src/Elements/OpalDegrader.h                   |   0
 src/Elements/OpalDrift.cpp                    |   0
 src/Elements/OpalDrift.h                      |   0
 src/Elements/OpalECollimator.cpp              |   0
 src/Elements/OpalECollimator.h                |   0
 src/Elements/OpalElement.cpp                  |   0
 src/Elements/OpalElement.h                    |   0
 src/Elements/OpalHKicker.cpp                  |   0
 src/Elements/OpalHKicker.h                    |   0
 src/Elements/OpalHMonitor.cpp                 |   0
 src/Elements/OpalHMonitor.h                   |   0
 src/Elements/OpalInstrument.cpp               |   0
 src/Elements/OpalInstrument.h                 |   0
 src/Elements/OpalKicker.cpp                   |   0
 src/Elements/OpalKicker.h                     |   0
 src/Elements/OpalMarker.cpp                   |   0
 src/Elements/OpalMarker.h                     |   0
 src/Elements/OpalMonitor.cpp                  |   0
 src/Elements/OpalMonitor.h                    |   0
 src/Elements/OpalMultipole.cpp                |   0
 src/Elements/OpalMultipole.h                  |   0
 src/Elements/OpalMultipoleT.cpp               |   0
 src/Elements/OpalMultipoleT.h                 |   0
 src/Elements/OpalOctupole.cpp                 |   0
 src/Elements/OpalOctupole.h                   |   0
 .../OpalOffset/OpalGlobalCartesianOffset.cpp  |   0
 .../OpalOffset/OpalGlobalCartesianOffset.h    |   0
 .../OpalGlobalCylindricalOffset.cpp           |   0
 .../OpalOffset/OpalGlobalCylindricalOffset.h  |   0
 .../OpalOffset/OpalLocalCartesianOffset.cpp   |   0
 .../OpalOffset/OpalLocalCartesianOffset.h     |   0
 .../OpalOffset/OpalLocalCylindricalOffset.cpp |   0
 .../OpalOffset/OpalLocalCylindricalOffset.h   |   0
 src/Elements/OpalParallelPlate.cpp            |   0
 src/Elements/OpalParallelPlate.h              |   0
 src/Elements/OpalPatch.cpp                    |   0
 src/Elements/OpalPatch.h                      |   0
 src/Elements/OpalPepperPot.cpp                |   0
 src/Elements/OpalPepperPot.h                  |   0
 src/Elements/OpalPolynomialTimeDependence.cpp |   0
 src/Elements/OpalPolynomialTimeDependence.h   |   0
 src/Elements/OpalProbe.cpp                    |   0
 src/Elements/OpalProbe.h                      |   0
 src/Elements/OpalQuadrupole.cpp               |   0
 src/Elements/OpalQuadrupole.h                 |   0
 src/Elements/OpalRBend.cpp                    |   0
 src/Elements/OpalRBend.h                      |   0
 src/Elements/OpalRBend3D.cpp                  |   0
 src/Elements/OpalRBend3D.h                    |   0
 src/Elements/OpalRCollimator.cpp              |   0
 src/Elements/OpalRCollimator.h                |   0
 src/Elements/OpalRingDefinition.cpp           |   0
 src/Elements/OpalRingDefinition.h             |   0
 src/Elements/OpalSBend.cpp                    |   0
 src/Elements/OpalSBend.h                      |   0
 src/Elements/OpalSBend3D.cpp                  |   0
 src/Elements/OpalSBend3D.h                    |   0
 src/Elements/OpalSRot.cpp                     |   0
 src/Elements/OpalSRot.h                       |   0
 src/Elements/OpalScalingFFAGMagnet.cpp        |   0
 src/Elements/OpalScalingFFAGMagnet.h          |   0
 src/Elements/OpalSeparator.cpp                |   0
 src/Elements/OpalSeparator.h                  |   0
 src/Elements/OpalSeptum.cpp                   |   0
 src/Elements/OpalSeptum.h                     |   0
 src/Elements/OpalSextupole.cpp                |   0
 src/Elements/OpalSextupole.h                  |   0
 src/Elements/OpalSlit.cpp                     |   0
 src/Elements/OpalSlit.h                       |   0
 src/Elements/OpalSolenoid.cpp                 |   0
 src/Elements/OpalSolenoid.h                   |   0
 src/Elements/OpalSource.cpp                   |   0
 src/Elements/OpalSource.h                     |   0
 src/Elements/OpalStripper.cpp                 |   0
 src/Elements/OpalStripper.h                   |   0
 src/Elements/OpalTravelingWave.cpp            |   0
 src/Elements/OpalTravelingWave.h              |   0
 src/Elements/OpalVKicker.cpp                  |   0
 src/Elements/OpalVKicker.h                    |   0
 src/Elements/OpalVMonitor.cpp                 |   0
 src/Elements/OpalVMonitor.h                   |   0
 src/Elements/OpalVariableRFCavity.cpp         |   0
 src/Elements/OpalVariableRFCavity.h           |   0
 src/Elements/OpalWire.cpp                     |   0
 src/Elements/OpalWire.h                       |   0
 src/Elements/OpalYRot.cpp                     |   0
 src/Elements/OpalYRot.h                       |   0
 src/Errors/AlignBase.cpp                      |   0
 src/Errors/AlignBase.h                        |   0
 src/Errors/AlignHandler.cpp                   |   0
 src/Errors/AlignHandler.h                     |   0
 src/Errors/AlignReader.cpp                    |   0
 src/Errors/AlignReader.h                      |   0
 src/Errors/AlignRemover.cpp                   |   0
 src/Errors/AlignRemover.h                     |   0
 src/Errors/AlignWriter.cpp                    |   0
 src/Errors/AlignWriter.h                      |   0
 src/Errors/CMakeLists.txt                     |   0
 src/Errors/Error.cpp                          |   0
 src/Errors/Error.h                            |   0
 src/Errors/ErrorAlign.cpp                     |   0
 src/Errors/ErrorAlign.h                       |   0
 src/Errors/ErrorCmd.cpp                       |   0
 src/Errors/ErrorCmd.h                         |   0
 src/Errors/ErrorComp.cpp                      |   0
 src/Errors/ErrorComp.h                        |   0
 src/Errors/ErrorEnd.cpp                       |   0
 src/Errors/ErrorEnd.h                         |   0
 src/Errors/ErrorField.cpp                     |   0
 src/Errors/ErrorField.h                       |   0
 src/Errors/ErrorParser.cpp                    |   0
 src/Errors/ErrorParser.h                      |   0
 src/Errors/ErrorPrint.cpp                     |   0
 src/Errors/ErrorPrint.h                       |   0
 src/Errors/ErrorSave.cpp                      |   0
 src/Errors/ErrorSave.h                        |   0
 src/Errors/ErrorSelect.cpp                    |   0
 src/Errors/ErrorSelect.h                      |   0
 src/Errors/MPBase.cpp                         |   0
 src/Errors/MPBase.h                           |   0
 src/Errors/MPHandler.cpp                      |   0
 src/Errors/MPHandler.h                        |   0
 src/Errors/MPReader.cpp                       |   0
 src/Errors/MPReader.h                         |   0
 src/Errors/MPRemover.cpp                      |   0
 src/Errors/MPRemover.h                        |   0
 src/Errors/MPWriter.cpp                       |   0
 src/Errors/MPWriter.h                         |   0
 src/Expressions/AAutomatic.h                  |   0
 src/Expressions/ABinary.h                     |   0
 src/Expressions/AColumn.cpp                   |   0
 src/Expressions/AColumn.h                     |   0
 src/Expressions/ADeferred.h                   |   0
 src/Expressions/AList.h                       |   0
 src/Expressions/ARefAttr.h                    |   0
 src/Expressions/ARefExpr.h                    |   0
 src/Expressions/ARow.cpp                      |   0
 src/Expressions/ARow.h                        |   0
 src/Expressions/ASUnary.h                     |   0
 src/Expressions/ATable.cpp                    |   0
 src/Expressions/ATable.h                      |   0
 src/Expressions/AUnary.h                      |   0
 src/Expressions/AValue.h                      |   0
 src/Expressions/CMakeLists.txt                |   0
 src/Expressions/Expressions.cpp               |   0
 src/Expressions/Expressions.h                 |   0
 src/Expressions/Indexer.h                     |   0
 src/Expressions/SAutomatic.h                  |   0
 src/Expressions/SBinary.h                     |   0
 src/Expressions/SCell.cpp                     |   0
 src/Expressions/SCell.h                       |   0
 src/Expressions/SConstant.h                   |   0
 src/Expressions/SDeferred.h                   |   0
 src/Expressions/SFunction.cpp                 |   0
 src/Expressions/SFunction.h                   |   0
 src/Expressions/SHash.cpp                     |   0
 src/Expressions/SHash.h                       |   0
 src/Expressions/SNull.h                       |   0
 src/Expressions/SRefAttr.h                    |   0
 src/Expressions/SRefExpr.h                    |   0
 src/Expressions/SUnary.h                      |   0
 src/Expressions/SValue.h                      |   0
 src/Expressions/TFind.h                       |   0
 src/Expressions/TFunction0.h                  |   0
 src/Expressions/TFunction1.h                  |   0
 src/Expressions/TFunction2.h                  |   0
 src/Lines/CMakeLists.txt                      |   0
 src/Lines/FlatWriter.cpp                      |   0
 src/Lines/FlatWriter.h                        |   0
 src/Lines/Line.cpp                            |   0
 src/Lines/Line.h                              |   0
 src/Lines/LineTemplate.cpp                    |   0
 src/Lines/LineTemplate.h                      |   0
 src/Lines/Replacer.cpp                        |   0
 src/Lines/Replacer.h                          |   0
 src/Lines/Sequence.cpp                        |   0
 src/Lines/Sequence.h                          |   0
 src/Lines/SequenceMember.cpp                  |   0
 src/Lines/SequenceMember.h                    |   0
 src/Lines/SequenceParser.cpp                  |   0
 src/Lines/SequenceParser.h                    |   0
 src/Lines/SequenceTemplate.cpp                |   0
 src/Lines/SequenceTemplate.h                  |   0
 src/Main.cpp                                  |   0
 src/Match/AbstractFun.cpp                     |   0
 src/Match/AbstractFun.h                       |   0
 src/Match/AbstractVar.cpp                     |   0
 src/Match/AbstractVar.h                       |   0
 src/Match/CMakeLists.txt                      |   0
 src/Match/ConcreteFun.cpp                     |   0
 src/Match/ConcreteFun.h                       |   0
 src/Match/ConcreteVar.cpp                     |   0
 src/Match/ConcreteVar.h                       |   0
 src/Match/ConstraintCmd.cpp                   |   0
 src/Match/ConstraintCmd.h                     |   0
 src/Match/LMDif.cpp                           |   0
 src/Match/LMDif.h                             |   0
 src/Match/Match.cpp                           |   0
 src/Match/Match.h                             |   0
 src/Match/MatchCmd.cpp                        |   0
 src/Match/MatchCmd.h                          |   0
 src/Match/MatchEnd.cpp                        |   0
 src/Match/MatchEnd.h                          |   0
 src/Match/MatchLimits.h                       |   0
 src/Match/MatchOption.cpp                     |   0
 src/Match/MatchOption.h                       |   0
 src/Match/MatchParser.cpp                     |   0
 src/Match/MatchParser.h                       |   0
 src/Match/MatchState.h                        |   0
 src/Match/Migrad.cpp                          |   0
 src/Match/Migrad.h                            |   0
 src/Match/Simplex.cpp                         |   0
 src/Match/Simplex.h                           |   0
 src/Match/VaryCmd.cpp                         |   0
 src/Match/VaryCmd.h                           |   0
 src/OpalConfigure/CMakeLists.txt              |   0
 src/OpalConfigure/Configure.cpp               |   0
 src/OpalConfigure/Configure.h                 |   0
 src/OpalParser/CMakeLists.txt                 |   0
 src/OpalParser/CompoundStatement.cpp          |   0
 src/OpalParser/CompoundStatement.h            |   0
 src/OpalParser/IfStatement.cpp                |   0
 src/OpalParser/IfStatement.h                  |   0
 src/OpalParser/Macro.cpp                      |   0
 src/OpalParser/Macro.h                        |   0
 src/OpalParser/MacroCmd.cpp                   |   0
 src/OpalParser/MacroCmd.h                     |   0
 src/OpalParser/MacroStream.cpp                |   0
 src/OpalParser/MacroStream.h                  |   0
 src/OpalParser/OpalParser.cpp                 |   0
 src/OpalParser/OpalParser.h                   |   0
 src/OpalParser/WhileStatement.cpp             |   0
 src/OpalParser/WhileStatement.h               |   0
 src/Optimize/CMakeLists.txt                   |   0
 src/Optimize/Constraint.cpp                   |   0
 src/Optimize/Constraint.h                     |   0
 src/Optimize/DVar.cpp                         |   0
 src/Optimize/DVar.h                           |   0
 src/Optimize/Objective.cpp                    |   0
 src/Optimize/Objective.h                      |   0
 src/Optimize/OpalSimulation.cpp               |   0
 src/Optimize/OpalSimulation.h                 |   0
 src/Optimize/OptimizeCmd.cpp                  |   0
 src/Optimize/OptimizeCmd.h                    |   0
 src/PhysicsActions/CMakeLists.txt             |   0
 src/PhysicsActions/Dynamic.cpp                |   0
 src/PhysicsActions/Dynamic.h                  |   0
 src/PhysicsActions/MakeSequence.cpp           |   0
 src/PhysicsActions/MakeSequence.h             |   0
 src/PhysicsActions/SetIntegrator.cpp          |   0
 src/PhysicsActions/SetIntegrator.h            |   0
 src/PhysicsActions/Static.cpp                 |   0
 src/PhysicsActions/Static.h                   |   0
 src/Solvers/AMR_MG/Amesos2BottomSolver.h      |   0
 src/Solvers/AMR_MG/Amesos2BottomSolver.hpp    |   0
 src/Solvers/AMR_MG/AmrBoundary.h              |   0
 src/Solvers/AMR_MG/AmrDirichletBoundary.h     |   0
 src/Solvers/AMR_MG/AmrInterpolater.h          |   0
 src/Solvers/AMR_MG/AmrLagrangeInterpolater.h  |   0
 .../AMR_MG/AmrLagrangeInterpolater.hpp        |   0
 src/Solvers/AMR_MG/AmrMultiGrid.cpp           |   0
 src/Solvers/AMR_MG/AmrMultiGrid.h             |   0
 src/Solvers/AMR_MG/AmrMultiGridCore.h         |   0
 src/Solvers/AMR_MG/AmrMultiGridDefs.h         |   0
 src/Solvers/AMR_MG/AmrMultiGridLevel.h        |   0
 src/Solvers/AMR_MG/AmrMultiGridLevel.hpp      |   0
 src/Solvers/AMR_MG/AmrOpenBoundary.h          |   0
 src/Solvers/AMR_MG/AmrPCInterpolater.h        |   0
 src/Solvers/AMR_MG/AmrPCInterpolater.hpp      |   0
 src/Solvers/AMR_MG/AmrPeriodicBoundary.h      |   0
 src/Solvers/AMR_MG/AmrPreconditioner.h        |   0
 src/Solvers/AMR_MG/AmrSmoother.cpp            |   0
 src/Solvers/AMR_MG/AmrSmoother.h              |   0
 src/Solvers/AMR_MG/AmrTrilinearInterpolater.h |   0
 .../AMR_MG/AmrTrilinearInterpolater.hpp       |   0
 src/Solvers/AMR_MG/BelosBottomSolver.h        |   0
 src/Solvers/AMR_MG/BelosBottomSolver.hpp      |   0
 src/Solvers/AMR_MG/BottomSolver.h             |   0
 src/Solvers/AMR_MG/CMakeLists.txt             |   0
 src/Solvers/AMR_MG/Ifpack2Preconditioner.h    |   0
 src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp  |   0
 src/Solvers/AMR_MG/MueLuBottomSolver.h        |   0
 src/Solvers/AMR_MG/MueLuBottomSolver.hpp      |   0
 src/Solvers/AMR_MG/MueLuPreconditioner.h      |   0
 src/Solvers/AMR_MG/MueLuPreconditioner.hpp    |   0
 src/Solvers/AmrPoissonSolver.h                |   0
 src/Solvers/ArbitraryDomain.cpp               |   0
 src/Solvers/ArbitraryDomain.h                 |   0
 src/Solvers/BoxCornerDomain.cpp               |   0
 src/Solvers/BoxCornerDomain.h                 |   0
 .../BoxLibSolvers/FMGPoissonSolver.cpp        |   0
 src/Solvers/BoxLibSolvers/FMGPoissonSolver.h  |   0
 src/Solvers/CMakeLists.txt                    |   0
 src/Solvers/EllipticDomain.cpp                |   0
 src/Solvers/EllipticDomain.h                  |   0
 src/Solvers/FFTBoxPoissonSolver.cpp           |   0
 src/Solvers/FFTBoxPoissonSolver.h             |   0
 src/Solvers/FFTPoissonSolver.cpp              |   0
 src/Solvers/FFTPoissonSolver.h                |   0
 src/Solvers/IrregularDomain.h                 |   0
 src/Solvers/MGPoissonSolver.cpp               |   0
 src/Solvers/MGPoissonSolver.h                 |   0
 src/Solvers/P3MPoissonSolver.cpp              |   0
 src/Solvers/P3MPoissonSolver.h                |   0
 src/Solvers/PoissonSolver.h                   |   0
 src/Solvers/RectangularDomain.cpp             |   0
 src/Solvers/RectangularDomain.h               |   0
 src/Solvers/TaperDomain.cpp                   |   0
 src/Solvers/TaperDomain.h                     |   0
 src/Steppers/BorisPusher.h                    |   0
 src/Steppers/CMakeLists.txt                   |   0
 src/Steppers/LF2.h                            |   0
 src/Steppers/LF2.hpp                          |   0
 src/Steppers/RK4.h                            |   0
 src/Steppers/RK4.hpp                          |   0
 src/Steppers/Stepper.h                        |   0
 src/Steppers/Steppers.h                       |   0
 src/Structure/Beam.cpp                        |   0
 src/Structure/Beam.h                          |   0
 src/Structure/BoundaryGeometry.cpp            |   0
 src/Structure/BoundaryGeometry.h              |   0
 src/Structure/CMakeLists.txt                  |   0
 src/Structure/DataSink.cpp                    |   0
 src/Structure/DataSink.h                      |   0
 src/Structure/FieldSolver.cpp                 |   0
 src/Structure/FieldSolver.h                   |   0
 src/Structure/H5PartWrapper.cpp               |   0
 src/Structure/H5PartWrapper.h                 |   0
 src/Structure/H5PartWrapperForPC.cpp          |   0
 src/Structure/H5PartWrapperForPC.h            |   0
 src/Structure/H5PartWrapperForPS.cpp          |   0
 src/Structure/H5PartWrapperForPS.h            |   0
 src/Structure/H5PartWrapperForPT.cpp          |   0
 src/Structure/H5PartWrapperForPT.h            |   0
 src/Structure/IpplInfoWrapper.cpp             |   0
 src/Structure/IpplInfoWrapper.h               |   0
 src/Structure/OpalInputInterpreter.cpp        |   0
 src/Structure/OpalInputInterpreter.h          |   0
 src/Structure/OpalWake.cpp                    |   0
 src/Structure/OpalWake.h                      |   0
 src/Structure/ParticleMatterInteraction.cpp   |   0
 src/Structure/ParticleMatterInteraction.h     |   0
 src/Structure/PriEmissionPhysics.cpp          |   0
 src/Structure/PriEmissionPhysics.h            |   0
 src/Structure/SecondaryEmissionPhysics.cpp    |   0
 src/Structure/SecondaryEmissionPhysics.h      |   0
 src/Structure/TracerParticles.cpp             |   0
 src/Structure/TracerParticles.hpp             |   0
 src/Tables/AttList.cpp                        |   0
 src/Tables/AttList.h                          |   0
 src/Tables/AttWriter.cpp                      |   0
 src/Tables/AttWriter.h                        |   0
 src/Tables/CMakeLists.txt                     |   0
 src/Tables/CorrectionBase.cpp                 |   0
 src/Tables/CorrectionBase.h                   |   0
 src/Tables/Eigen.cpp                          |   0
 src/Tables/Eigen.h                            |   0
 src/Tables/Envelope.cpp                       |   0
 src/Tables/Envelope.h                         |   0
 src/Tables/Flatten.h                          |   0
 src/Tables/Insertion.cpp                      |   0
 src/Tables/Insertion.h                        |   0
 src/Tables/List.cpp                           |   0
 src/Tables/List.h                             |   0
 src/Tables/MatrixCmd.cpp                      |   0
 src/Tables/MatrixCmd.h                        |   0
 src/Tables/Micado.cpp                         |   0
 src/Tables/Micado.h                           |   0
 src/Tables/Period.cpp                         |   0
 src/Tables/Period.h                           |   0
 src/Tables/RangeSelector.cpp                  |   0
 src/Tables/RangeSelector.h                    |   0
 src/Tables/Selector.cpp                       |   0
 src/Tables/Selector.h                         |   0
 src/Tables/Survey.cpp                         |   0
 src/Tables/Survey.h                           |   0
 src/Tables/TableTester.cpp                    |   0
 src/Tables/TableTester.h                      |   0
 src/Tables/ThreadAll.cpp                      |   0
 src/Tables/ThreadAll.h                        |   0
 src/Tables/ThreadBpm.cpp                      |   0
 src/Tables/ThreadBpm.h                        |   0
 src/Tables/Twiss.cpp                          |   0
 src/Tables/Twiss.h                            |   0
 src/Tables/Twiss3.cpp                         |   0
 src/Tables/Twiss3.h                           |   0
 src/Track/CMakeLists.txt                      |   0
 src/Track/Track.cpp                           |   0
 src/Track/Track.h                             |   0
 src/Track/TrackCmd.cpp                        |   0
 src/Track/TrackCmd.h                          |   0
 src/Track/TrackEnd.cpp                        |   0
 src/Track/TrackEnd.h                          |   0
 src/Track/TrackParser.cpp                     |   0
 src/Track/TrackParser.h                       |   0
 src/Track/TrackRun.cpp                        |   0
 src/Track/TrackRun.h                          |   0
 src/Track/TrackSave.cpp                       |   0
 src/Track/TrackSave.h                         |   0
 src/Track/TrackStart.cpp                      |   0
 src/Track/TrackStart.h                        |   0
 src/Utilities/CMakeLists.txt                  |   0
 src/Utilities/NumToStr.h                      |   0
 src/Utilities/OpalException.cpp               |   0
 src/Utilities/OpalException.h                 |   0
 src/Utilities/OpalFilter.cpp                  |   0
 src/Utilities/OpalFilter.h                    |   0
 src/Utilities/OpalSection.cpp                 |   0
 src/Utilities/OpalSection.h                   |   0
 src/Utilities/RegularExpression.cpp           |   0
 src/Utilities/RegularExpression.h             |   0
 src/Utilities/Round.cpp                       |   0
 src/Utilities/Round.h                         |   0
 src/Utilities/Timer.cpp                       |   0
 src/Utilities/Timer.h                         |   0
 src/Utilities/TpsWerrf.cpp                    |   0
 src/Utilities/TpsWerrf.h                      |   0
 src/Utilities/Truncate.cpp                    |   0
 src/Utilities/Truncate.h                      |   0
 src/ValueDefinitions/BoolConstant.cpp         |   0
 src/ValueDefinitions/BoolConstant.h           |   0
 src/ValueDefinitions/CMakeLists.txt           |   0
 src/ValueDefinitions/RealConstant.cpp         |   0
 src/ValueDefinitions/RealConstant.h           |   0
 src/ValueDefinitions/RealVariable.cpp         |   0
 src/ValueDefinitions/RealVariable.h           |   0
 src/ValueDefinitions/RealVector.cpp           |   0
 src/ValueDefinitions/RealVector.h             |   0
 src/ValueDefinitions/StringConstant.cpp       |   0
 src/ValueDefinitions/StringConstant.h         |   0
 src/addToDoxygenMainPage.h                    |   0
 src/changes.cpp                               |   0
 src/changes.h                                 |   0
 src/config.h.in                               |   0
 src/opal.cpp                                  |   0
 src/opal.h                                    |   0
 src/revision.h.in                             |   0
 tests/CMakeLists.txt                          |   0
 tests/Kollimator/Degrader/Degrader-1-RT.o     |   0
 tests/Kollimator/Degrader/Degrader-1.in       |   0
 tests/Kollimator/Degrader/Degrader-1.rt       |   0
 tests/Kollimator/Degrader/Degrader-1.sge      |   0
 .../Degrader/reference/Degrader-1.lbal        |   0
 .../Degrader/reference/Degrader-1.lbal.md5    |   0
 .../Degrader/reference/Degrader-1.out         |   0
 .../Degrader/reference/Degrader-1.out.md5     |   0
 .../Degrader/reference/Degrader-1.stat        |   0
 .../Degrader/reference/Degrader-1.stat.md5    |   0
 tests/Kollimator/collimator.in                |   0
 tests/Main.cpp                                |   0
 .../PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in  |   0
 tests/classic_src/AbsBeamline/CMakeLists.txt  |   0
 .../AbsBeamline/DipoleFieldTest.cpp           |   0
 .../AbsBeamline/MultipoleTTest.cpp            |   0
 tests/classic_src/AbsBeamline/OffsetTest.cpp  |   0
 tests/classic_src/AbsBeamline/RingTest.cpp    |   0
 tests/classic_src/AbsBeamline/SBend3DTest.cpp |   0
 .../classic_src/AbsBeamline/SBend3D_map.field |   0
 .../AbsBeamline/ScalingFFAGMagnetTest.cpp     |   0
 .../AbsBeamline/VariableRFCavityTest.cpp      |   0
 tests/classic_src/Algorithms/CMakeLists.txt   |   0
 .../PolynomialTimeDependenceTest.cpp          |   0
 tests/classic_src/CMakeLists.txt              |   0
 tests/classic_src/Fields/CMakeLists.txt       |   0
 .../Fields/Interpolation/CMakeLists.txt       |   0
 .../Fields/Interpolation/NDGridTest.cpp       |   0
 .../Interpolation/PPSolveFactoryTest.cpp      |   0
 .../Interpolation/PolynomialPatchTest.cpp     |   0
 .../Fields/Interpolation/SolveFactoryTest.cpp |   0
 .../SquarePolynomialVectorTest.cpp            |   0
 .../Fields/Interpolation/ThreeDGridTest.cpp   |   0
 tests/classic_src/Utilities/CMakeLists.txt    |   0
 .../classic_src/Utilities/RingSectionTest.cpp |   0
 tests/ippl_src/CMakeLists.txt                 |   0
 tests/ippl_src/Particle/CMakeLists.txt        |   0
 tests/ippl_src/Particle/EdgeCentering.cpp     |   0
 .../StatisticalErrors/CMakeLists.txt          |   0
 .../Algorithms/StatisticalErrors/Test1.cpp    |   0
 .../Algorithms/StatisticalErrors/Test1.h      |   0
 tests/opal_src/BasicActions/CMakeLists.txt    |   0
 .../BasicActions/DumpEMFieldsTest.cpp         |   0
 .../opal_src/BasicActions/DumpFieldsTest.cpp  |   0
 tests/opal_src/CMakeLists.txt                 |   0
 tests/opal_src/Distribution/BinomialTest.cpp  |   0
 tests/opal_src/Distribution/CMakeLists.txt    |   0
 tests/opal_src/Distribution/GaussTest.cpp     |   0
 tests/opal_src/Elements/CMakeLists.txt        |   0
 tests/opal_src/Elements/OpalOffsetTest.cpp    |   0
 .../OpalPolynomialTimeDependenceTest.cpp      |   0
 .../Elements/OpalVariableRFCavityTest.cpp     |   0
 tests/opal_src/Utilities/CMakeLists.txt       |   0
 tests/opal_src/Utilities/MockComponent.h      |   0
 tests/opal_test_utilities/CMakeLists.txt      |   0
 tests/opal_test_utilities/SilenceTest.cpp     |   0
 tests/opal_test_utilities/SilenceTest.h       |   0
 tests/sc/test-1.in                            |   0
 tests/sc/test-2.in                            |   0
 tests/sc/test-3.in                            |   0
 tools/BandRF/Makefile.def                     |   0
 tools/BandRF/Readme                           |   0
 tools/BandRF/ascii2h5block_asgic.cpp          |   0
 tools/CMakeLists.txt                          |   0
 tools/README                                  |   0
 tools/SDDS.patch                              |   0
 tools/SDDSCMakeLists.tar.gz                   | Bin
 tools/SDDSReader/CMakeLists.txt               |   0
 tools/SDDSReader/config.h.in                  |   0
 tools/SDDSReader/main.cpp                     |   0
 tools/emacs/opal.el                           |   0
 tools/opal2sdds/CMakeLists.txt                |   0
 tools/opal2sdds/config.h.in                   |   0
 tools/opal2sdds/main.cpp                      |   0
 tools/sdds2opal/CMakeLists.txt                |   0
 tools/sdds2opal/config.h.in                   |   0
 tools/sdds2opal/main.cpp                      |   0
 2778 files changed, 56 insertions(+), 9 deletions(-)
 mode change 100755 => 100644 .gitattributes
 mode change 100755 => 100644 .gitignore
 mode change 100755 => 100644 CMakeLists.txt
 mode change 100755 => 100644 CMakeModules/FindGSL.cmake
 mode change 100755 => 100644 CMakeModules/FindGTest.cmake
 mode change 100755 => 100644 CMakeModules/FindH5Hut.cmake
 mode change 100755 => 100644 CMakeModules/FindHDF5.cmake
 mode change 100755 => 100644 CMakeModules/FindSDDS.cmake
 mode change 100755 => 100644 Doxyfile
 mode change 100755 => 100644 README.md
 mode change 100755 => 100644 cmake/OPALConfig.cmake.in
 mode change 100755 => 100644 doc/randomnotes.txt
 mode change 100755 => 100644 doc/refcard/opal-ref-card-bibliography.bib
 mode change 100755 => 100644 doc/refcard/opal-refcard.tex
 mode change 100755 => 100644 ippl/CMakeLists.txt
 mode change 100755 => 100644 ippl/Doxyfile
 mode change 100755 => 100644 ippl/INSTALL
 mode change 100755 => 100644 ippl/LICENSE
 mode change 100755 => 100644 ippl/README
 mode change 100755 => 100644 ippl/cmake/IPPLConfig.cmake.in
 mode change 100755 => 100644 ippl/doc/tex/dingbat.sty
 mode change 100755 => 100644 ippl/doc/tex/error_time.pdf
 mode change 100755 => 100644 ippl/doc/tex/figures/psi_logo_wide.eps
 mode change 100755 => 100644 ippl/doc/tex/figures/psi_logo_wide.pdf
 mode change 100755 => 100644 ippl/doc/tex/greens.pdf
 mode change 100755 => 100644 ippl/doc/tex/greens.ps
 mode change 100755 => 100644 ippl/doc/tex/html.sty
 mode change 100755 => 100644 ippl/doc/tex/introduction.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_centering_ref.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_fft.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_field_ref.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_fieldlayout_ref.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_fields.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_index_ref.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_mesh_ref.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_particles.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_setup.tex
 mode change 100755 => 100644 ippl/doc/tex/ippl_user_guide.tex
 mode change 100755 => 100644 ippl/doc/tex/pdfdraftcopy.sty
 mode change 100755 => 100644 ippl/src/.gitignore
 mode change 100755 => 100644 ippl/src/AmrParticle/AmrParticleBase.h
 mode change 100755 => 100644 ippl/src/AmrParticle/AmrParticleBase.hpp
 mode change 100755 => 100644 ippl/src/AmrParticle/AmrParticleLevelCounter.h
 mode change 100755 => 100644 ippl/src/AmrParticle/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/AmrParticle/ParticleAmrLayout.h
 mode change 100755 => 100644 ippl/src/AppTypes/AntiSymTenzor.h
 mode change 100755 => 100644 ippl/src/AppTypes/AppTypeTraits.h
 mode change 100755 => 100644 ippl/src/AppTypes/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/AppTypes/GenVektor.h
 mode change 100755 => 100644 ippl/src/AppTypes/SymTenzor.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMeta.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaAssign.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaBinary.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaCompare.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaCross.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaDot.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaDotDot.h
 mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaUnary.h
 mode change 100755 => 100644 ippl/src/AppTypes/Tenzor.h
 mode change 100755 => 100644 ippl/src/AppTypes/Vektor.h
 mode change 100755 => 100644 ippl/src/AppTypes/dcomplex.h
 mode change 100755 => 100644 ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/SymTenzor_1D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/SymTenzor_2D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/SymTenzor_3D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/Tenzor_1D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/Tenzor_2D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/Tenzor_3D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/Vektor_1D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/Vektor_2D.cpp
 mode change 100755 => 100644 ippl/src/AppTypes/inst/Vektor_3D.cpp
 mode change 100755 => 100644 ippl/src/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/DataSource/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/DataSource/DataConnect.cpp
 mode change 100755 => 100644 ippl/src/DataSource/DataConnect.h
 mode change 100755 => 100644 ippl/src/DataSource/DataConnectCreator.cpp
 mode change 100755 => 100644 ippl/src/DataSource/DataConnectCreator.h
 mode change 100755 => 100644 ippl/src/DataSource/DataSource.cpp
 mode change 100755 => 100644 ippl/src/DataSource/DataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/DataSourceObject.h
 mode change 100755 => 100644 ippl/src/DataSource/FieldDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/FieldDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/FileDataConnect.h
 mode change 100755 => 100644 ippl/src/DataSource/FileFieldDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/FileFieldDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/FilePtclAttribDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/FilePtclAttribDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/FilePtclBaseDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/FilePtclBaseDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/MakeDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/MakeDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/PtclAttribDataSource.cpp
 mode change 100755 => 100644 ippl/src/DataSource/PtclAttribDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/PtclBaseDataSource.cpp
 mode change 100755 => 100644 ippl/src/DataSource/PtclBaseDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/ScalarDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/ScalarDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/StringDataSource.h
 mode change 100755 => 100644 ippl/src/DataSource/StringDataSource.hpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribAppTypesDS_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribAppTypesDS_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribAppTypesDS_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribDS_all.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseUniformDS_1D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseUniformDS_2D.cpp
 mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseUniformDS_3D.cpp
 mode change 100755 => 100644 ippl/src/DomainMap/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/DomainMap/DomainMap.h
 mode change 100755 => 100644 ippl/src/DomainMap/DomainMap.hpp
 mode change 100755 => 100644 ippl/src/FFT/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/FFT/FFT.h
 mode change 100755 => 100644 ippl/src/FFT/FFT.hpp
 mode change 100755 => 100644 ippl/src/FFT/FFTBase.h
 mode change 100755 => 100644 ippl/src/FFT/FFTBase.hpp
 mode change 100755 => 100644 ippl/src/FFT/SCSL_FFT.F
 mode change 100755 => 100644 ippl/src/FFT/SCSL_FFT.h
 mode change 100755 => 100644 ippl/src/FFT/c_utils.c
 mode change 100755 => 100644 ippl/src/FFT/c_utils.h
 mode change 100755 => 100644 ippl/src/FFT/f2c.h
 mode change 100755 => 100644 ippl/src/FFT/fftpack.F
 mode change 100755 => 100644 ippl/src/FFT/fftpack.cpp
 mode change 100755 => 100644 ippl/src/FFT/fftpack.h
 mode change 100755 => 100644 ippl/src/FFT/fftpack_FFT.h
 mode change 100755 => 100644 ippl/src/FFT/fftpack_inc.c
 mode change 100755 => 100644 ippl/src/Field/Assign.h
 mode change 100755 => 100644 ippl/src/Field/Assign.hpp
 mode change 100755 => 100644 ippl/src/Field/AssignDefs.h
 mode change 100755 => 100644 ippl/src/Field/AssignGeneralBF.hpp
 mode change 100755 => 100644 ippl/src/Field/AssignGeneralIBF.hpp
 mode change 100755 => 100644 ippl/src/Field/AssignTags.h
 mode change 100755 => 100644 ippl/src/Field/BCond.h
 mode change 100755 => 100644 ippl/src/Field/BCond.hpp
 mode change 100755 => 100644 ippl/src/Field/BareField.h
 mode change 100755 => 100644 ippl/src/Field/BareField.hpp
 mode change 100755 => 100644 ippl/src/Field/BareFieldIterator.h
 mode change 100755 => 100644 ippl/src/Field/BrickExpression.h
 mode change 100755 => 100644 ippl/src/Field/BrickExpression.hpp
 mode change 100755 => 100644 ippl/src/Field/BrickIterator.h
 mode change 100755 => 100644 ippl/src/Field/BrickIterator.hpp
 mode change 100755 => 100644 ippl/src/Field/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Field/CompressedBrickIterator.h
 mode change 100755 => 100644 ippl/src/Field/CompressedBrickIterator.hpp
 mode change 100755 => 100644 ippl/src/Field/Field.h
 mode change 100755 => 100644 ippl/src/Field/Field.hpp
 mode change 100755 => 100644 ippl/src/Field/FieldLoc.h
 mode change 100755 => 100644 ippl/src/Field/FieldSpec.h
 mode change 100755 => 100644 ippl/src/Field/GuardCellSizes.h
 mode change 100755 => 100644 ippl/src/Field/GuardCellSizes.hpp
 mode change 100755 => 100644 ippl/src/Field/IndexedBareField.h
 mode change 100755 => 100644 ippl/src/Field/IndexedBareField.hpp
 mode change 100755 => 100644 ippl/src/Field/IndexedField.h
 mode change 100755 => 100644 ippl/src/Field/LField.h
 mode change 100755 => 100644 ippl/src/Field/LField.hpp
 mode change 100755 => 100644 ippl/src/Field/ReductionLoc.h
 mode change 100755 => 100644 ippl/src/Field/ReductionLoc.hpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareFieldAppTypes_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareFieldAppTypes_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareFieldAppTypes_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_cmplx_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_cmplx_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_cmplx_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_fp_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_fp_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_fp_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_int_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_int_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/BareField_int_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/GuardCellSizes_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/GuardCellSizes_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/GuardCellSizes_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/LFieldAppTypes_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/LFieldAppTypes_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/LFieldAppTypes_3D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/LField_1D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/LField_2D.cpp
 mode change 100755 => 100644 ippl/src/Field/inst/LField_3D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/BinaryBalancer.h
 mode change 100755 => 100644 ippl/src/FieldLayout/BinaryBalancer.hpp
 mode change 100755 => 100644 ippl/src/FieldLayout/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/FieldLayout/CenteredFieldLayout.h
 mode change 100755 => 100644 ippl/src/FieldLayout/CenteredFieldLayout.hpp
 mode change 100755 => 100644 ippl/src/FieldLayout/ConejoBalancer.h
 mode change 100755 => 100644 ippl/src/FieldLayout/ConejoBalancer.hpp
 mode change 100755 => 100644 ippl/src/FieldLayout/ConejoBalancer_inst.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayout.h
 mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayout.hpp
 mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayoutUser.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayoutUser.h
 mode change 100755 => 100644 ippl/src/FieldLayout/MultiBalancer.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/MultiBalancer.h
 mode change 100755 => 100644 ippl/src/FieldLayout/MultiBalancer.t.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/VRB.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/VRB.h
 mode change 100755 => 100644 ippl/src/FieldLayout/Vnode.h
 mode change 100755 => 100644 ippl/src/FieldLayout/VnodeMultiBalancer.h
 mode change 100755 => 100644 ippl/src/FieldLayout/VnodeMultiBalancer.hpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_1D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_2D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_3D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_1D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_2D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_3D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/FieldLayout_1D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/FieldLayout_2D.cpp
 mode change 100755 => 100644 ippl/src/FieldLayout/inst/FieldLayout_3D.cpp
 mode change 100755 => 100644 ippl/src/Index/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Index/Index.cpp
 mode change 100755 => 100644 ippl/src/Index/Index.h
 mode change 100755 => 100644 ippl/src/Index/IndexInlines.h
 mode change 100755 => 100644 ippl/src/Index/IndexedSIndex.h
 mode change 100755 => 100644 ippl/src/Index/LSIndex.h
 mode change 100755 => 100644 ippl/src/Index/NDIndex.h
 mode change 100755 => 100644 ippl/src/Index/NDIndexInlines.h
 mode change 100755 => 100644 ippl/src/Index/SIndex.h
 mode change 100755 => 100644 ippl/src/Index/SIndex.hpp
 mode change 100755 => 100644 ippl/src/Index/SIndexAssign.h
 mode change 100755 => 100644 ippl/src/Index/SIndexAssign.hpp
 mode change 100755 => 100644 ippl/src/Index/SOffset.h
 mode change 100755 => 100644 ippl/src/Index/inst/LSIndex_1D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/LSIndex_2D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/LSIndex_3D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/NDIndex_1D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/NDIndex_2D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/NDIndex_3D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/SIndex_1D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/SIndex_2D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/SIndex_3D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/SOffset_1D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/SOffset_2D.cpp
 mode change 100755 => 100644 ippl/src/Index/inst/SOffset_3D.cpp
 mode change 100755 => 100644 ippl/src/Ippl.h
 mode change 100755 => 100644 ippl/src/IpplVersions.h.in
 mode change 100755 => 100644 ippl/src/Meshes/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Meshes/Cartesian.h
 mode change 100755 => 100644 ippl/src/Meshes/Cartesian.hpp
 mode change 100755 => 100644 ippl/src/Meshes/CartesianCentering.h
 mode change 100755 => 100644 ippl/src/Meshes/CartesianCentering.hpp
 mode change 100755 => 100644 ippl/src/Meshes/CartesianCentering_inst.cpp
 mode change 100755 => 100644 ippl/src/Meshes/CartesianStencilSetup.h
 mode change 100755 => 100644 ippl/src/Meshes/Centering.cpp
 mode change 100755 => 100644 ippl/src/Meshes/Centering.h
 mode change 100755 => 100644 ippl/src/Meshes/Mesh.h
 mode change 100755 => 100644 ippl/src/Meshes/Mesh.hpp
 mode change 100755 => 100644 ippl/src/Meshes/UniformCartesian.h
 mode change 100755 => 100644 ippl/src/Meshes/UniformCartesian.hpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/Cartesian_1D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/Cartesian_2D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/Cartesian_3D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/Mesh_1D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/Mesh_2D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/Mesh_3D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/UniformCartesian_1D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/UniformCartesian_2D.cpp
 mode change 100755 => 100644 ippl/src/Meshes/inst/UniformCartesian_3D.cpp
 mode change 100755 => 100644 ippl/src/Message/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Message/CRC.cpp
 mode change 100755 => 100644 ippl/src/Message/CRC.h
 mode change 100755 => 100644 ippl/src/Message/CommCreator.cpp
 mode change 100755 => 100644 ippl/src/Message/CommCreator.h
 mode change 100755 => 100644 ippl/src/Message/CommMPI.cpp
 mode change 100755 => 100644 ippl/src/Message/CommMPI.h
 mode change 100755 => 100644 ippl/src/Message/CommPM.cpp
 mode change 100755 => 100644 ippl/src/Message/CommPM.h
 mode change 100755 => 100644 ippl/src/Message/CommSHMEMPI.cpp
 mode change 100755 => 100644 ippl/src/Message/CommSHMEMPI.h
 mode change 100755 => 100644 ippl/src/Message/Communicate.cpp
 mode change 100755 => 100644 ippl/src/Message/Communicate.h
 mode change 100755 => 100644 ippl/src/Message/DataTypes.h
 mode change 100755 => 100644 ippl/src/Message/Formatter.cpp
 mode change 100755 => 100644 ippl/src/Message/Formatter.h
 mode change 100755 => 100644 ippl/src/Message/GlobalComm.h
 mode change 100755 => 100644 ippl/src/Message/GlobalComm.hpp
 mode change 100755 => 100644 ippl/src/Message/Message.h
 mode change 100755 => 100644 ippl/src/Message/Message.hpp
 mode change 100755 => 100644 ippl/src/Message/MessageFunctions.cpp
 mode change 100755 => 100644 ippl/src/Message/Operations.h
 mode change 100755 => 100644 ippl/src/Message/TagMaker.h
 mode change 100755 => 100644 ippl/src/Message/Tags.h
 mode change 100755 => 100644 ippl/src/PETE/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/PETE/IpplExpressions.h
 mode change 100755 => 100644 ippl/src/PETE/IpplTypeComputations.h
 mode change 100755 => 100644 ippl/src/PETE/PETE.h
 mode change 100755 => 100644 ippl/src/PETE/TypeComputations.h
 mode change 100755 => 100644 ippl/src/Particle/AbstractParticle.h
 mode change 100755 => 100644 ippl/src/Particle/BoxParticleCachingPolicy.h
 mode change 100755 => 100644 ippl/src/Particle/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Particle/CellParticleCachingPolicy.h
 mode change 100755 => 100644 ippl/src/Particle/GenArrayParticle.h
 mode change 100755 => 100644 ippl/src/Particle/GenParticle.h
 mode change 100755 => 100644 ippl/src/Particle/IntCIC.h
 mode change 100755 => 100644 ippl/src/Particle/IntNGP.h
 mode change 100755 => 100644 ippl/src/Particle/IntSUDS.h
 mode change 100755 => 100644 ippl/src/Particle/IntTSC.h
 mode change 100755 => 100644 ippl/src/Particle/Interpolator.h
 mode change 100755 => 100644 ippl/src/Particle/IpplParticleBase.h
 mode change 100755 => 100644 ippl/src/Particle/IpplParticleBase.hpp
 mode change 100755 => 100644 ippl/src/Particle/NoParticleCachingPolicy.h
 mode change 100755 => 100644 ippl/src/Particle/PAssign.h
 mode change 100755 => 100644 ippl/src/Particle/PAssign.hpp
 mode change 100755 => 100644 ippl/src/Particle/PAssignDefs.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/BasicPairBuilder.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilder.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilderPeriodic.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel_globCHaining.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/PairConditions.h
 mode change 100755 => 100644 ippl/src/Particle/PairBuilder/SortingPairBuilder.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleAttrib.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleAttrib.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleAttribBase.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleAttribElem.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleBConds.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleBalancer.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleBalancer.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleCashedLayout.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleCashedLayout.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleInteractAttrib.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleInteractAttrib.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleInteractLayout.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleInteractLayout.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleLayout.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleLayout.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleLayoutFromGrid.cpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleLayoutFromGrid.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.cppNudge
 mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.hNudge
 mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.hpp
 mode change 100755 => 100644 ippl/src/Particle/ParticleUniformLayout.h
 mode change 100755 => 100644 ippl/src/Particle/ParticleUniformLayout.hpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttribAppTypes_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttribAppTypes_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttribAppTypes_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttrib_all.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBConds_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBConds_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBConds_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseUniform_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseUniform_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseUniform_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttribAppTypes_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttribAppTypes_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttribAppTypes_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttrib_all.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleLayout_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleLayout_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleLayout_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleUniformLayout_1D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleUniformLayout_2D.cpp
 mode change 100755 => 100644 ippl/src/Particle/inst/ParticleUniformLayout_3D.cpp
 mode change 100755 => 100644 ippl/src/Profile/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Profile/Profiler.cpp
 mode change 100755 => 100644 ippl/src/Profile/Profiler.h
 mode change 100755 => 100644 ippl/src/ReadMeBuild
 mode change 100755 => 100644 ippl/src/Region/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Region/NDRegion.h
 mode change 100755 => 100644 ippl/src/Region/PRegion.h
 mode change 100755 => 100644 ippl/src/Region/RegionLayout.h
 mode change 100755 => 100644 ippl/src/Region/RegionLayout.hpp
 mode change 100755 => 100644 ippl/src/Region/Rnode.h
 mode change 100755 => 100644 ippl/src/Region/inst/NDRegion_1D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/NDRegion_2D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/NDRegion_3D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/PRegion_all.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Cart_1D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Cart_2D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Cart_3D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Unif_1D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Unif_2D.cpp
 mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Unif_3D.cpp
 mode change 100755 => 100644 ippl/src/SubField/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/SubField/SubBareField.h
 mode change 100755 => 100644 ippl/src/SubField/SubBareField.hpp
 mode change 100755 => 100644 ippl/src/SubField/SubField.h
 mode change 100755 => 100644 ippl/src/SubField/SubField.hpp
 mode change 100755 => 100644 ippl/src/SubField/SubFieldAssign.h
 mode change 100755 => 100644 ippl/src/SubField/SubFieldAssign.hpp
 mode change 100755 => 100644 ippl/src/SubField/SubFieldAssignDefs.h
 mode change 100755 => 100644 ippl/src/SubField/SubFieldIter.h
 mode change 100755 => 100644 ippl/src/SubField/SubFieldTraits.h
 mode change 100755 => 100644 ippl/src/SubParticle/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAssign.h
 mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAssign.hpp
 mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAssignDefs.h
 mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAttrib.h
 mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAttrib.hpp
 mode change 100755 => 100644 ippl/src/Utility/CMakeLists.txt
 mode change 100755 => 100644 ippl/src/Utility/DiscBuffer.cpp
 mode change 100755 => 100644 ippl/src/Utility/DiscBuffer.h
 mode change 100755 => 100644 ippl/src/Utility/DiscConfig.cpp
 mode change 100755 => 100644 ippl/src/Utility/DiscConfig.h
 mode change 100755 => 100644 ippl/src/Utility/DiscField.h
 mode change 100755 => 100644 ippl/src/Utility/DiscField.hpp
 mode change 100755 => 100644 ippl/src/Utility/DiscMeta.cpp
 mode change 100755 => 100644 ippl/src/Utility/DiscMeta.h
 mode change 100755 => 100644 ippl/src/Utility/DiscParticle.h
 mode change 100755 => 100644 ippl/src/Utility/DiscParticle.hpp
 mode change 100755 => 100644 ippl/src/Utility/DiscParticleFunctions.cpp
 mode change 100755 => 100644 ippl/src/Utility/DiscType.h
 mode change 100755 => 100644 ippl/src/Utility/FieldBlock.h
 mode change 100755 => 100644 ippl/src/Utility/FieldBlock.hpp
 mode change 100755 => 100644 ippl/src/Utility/FieldDebug.h
 mode change 100755 => 100644 ippl/src/Utility/FieldDebug.hpp
 mode change 100755 => 100644 ippl/src/Utility/FieldDebugFunctions.cpp
 mode change 100755 => 100644 ippl/src/Utility/FieldDebugFunctions.h
 mode change 100755 => 100644 ippl/src/Utility/FieldDebugPrint.h
 mode change 100755 => 100644 ippl/src/Utility/FieldDebugPrint.hpp
 mode change 100755 => 100644 ippl/src/Utility/FieldPrint.h
 mode change 100755 => 100644 ippl/src/Utility/FieldPrint.hpp
 mode change 100755 => 100644 ippl/src/Utility/FieldView.h
 mode change 100755 => 100644 ippl/src/Utility/FieldView.hpp
 mode change 100755 => 100644 ippl/src/Utility/Inform.cpp
 mode change 100755 => 100644 ippl/src/Utility/Inform.h
 mode change 100755 => 100644 ippl/src/Utility/IplCounter.h
 mode change 100755 => 100644 ippl/src/Utility/IpplCounter.cpp
 mode change 100755 => 100644 ippl/src/Utility/IpplCounter.h
 mode change 100755 => 100644 ippl/src/Utility/IpplException.h
 mode change 100755 => 100644 ippl/src/Utility/IpplInfo.cpp
 mode change 100755 => 100644 ippl/src/Utility/IpplInfo.h
 mode change 100755 => 100644 ippl/src/Utility/IpplMemoryUsage.cpp
 mode change 100755 => 100644 ippl/src/Utility/IpplMemoryUsage.h
 mode change 100755 => 100644 ippl/src/Utility/IpplMessageCounter.cpp
 mode change 100755 => 100644 ippl/src/Utility/IpplMessageCounter.h
 mode change 100755 => 100644 ippl/src/Utility/IpplStats.cpp
 mode change 100755 => 100644 ippl/src/Utility/IpplStats.h
 mode change 100755 => 100644 ippl/src/Utility/IpplTimings.cpp
 mode change 100755 => 100644 ippl/src/Utility/IpplTimings.h
 mode change 100755 => 100644 ippl/src/Utility/NamedObj.h
 mode change 100755 => 100644 ippl/src/Utility/PAssert.cpp
 mode change 100755 => 100644 ippl/src/Utility/PAssert.h
 mode change 100755 => 100644 ippl/src/Utility/ParticleDebug.h
 mode change 100755 => 100644 ippl/src/Utility/ParticleDebug.hpp
 mode change 100755 => 100644 ippl/src/Utility/ParticleDebugFunctions.cpp
 mode change 100755 => 100644 ippl/src/Utility/ParticleDebugFunctions.h
 mode change 100755 => 100644 ippl/src/Utility/Pool.cpp
 mode change 100755 => 100644 ippl/src/Utility/Pool.h
 mode change 100755 => 100644 ippl/src/Utility/Pooled.h
 mode change 100755 => 100644 ippl/src/Utility/Pooled.hpp
 mode change 100755 => 100644 ippl/src/Utility/RNGAssignDefs.h
 mode change 100755 => 100644 ippl/src/Utility/RNGBitReverse.h
 mode change 100755 => 100644 ippl/src/Utility/RNGLattice.h
 mode change 100755 => 100644 ippl/src/Utility/RNGRand.h
 mode change 100755 => 100644 ippl/src/Utility/RNGSimple.cpp
 mode change 100755 => 100644 ippl/src/Utility/RNGSimple.h
 mode change 100755 => 100644 ippl/src/Utility/RNGXCI.cpp
 mode change 100755 => 100644 ippl/src/Utility/RNGXCI.h
 mode change 100755 => 100644 ippl/src/Utility/RNGXDiv.cpp
 mode change 100755 => 100644 ippl/src/Utility/RNGXDiv.h
 mode change 100755 => 100644 ippl/src/Utility/RandomNumberGen.cpp
 mode change 100755 => 100644 ippl/src/Utility/RandomNumberGen.h
 mode change 100755 => 100644 ippl/src/Utility/RefBlock.h
 mode change 100755 => 100644 ippl/src/Utility/RefCounted.h
 mode change 100755 => 100644 ippl/src/Utility/SequenceGen.h
 mode change 100755 => 100644 ippl/src/Utility/StaticIpplInfo.cpp
 mode change 100755 => 100644 ippl/src/Utility/StaticIpplInfo.h
 mode change 100755 => 100644 ippl/src/Utility/Timer.cpp
 mode change 100755 => 100644 ippl/src/Utility/Timer.h
 mode change 100755 => 100644 ippl/src/Utility/Unique.cpp
 mode change 100755 => 100644 ippl/src/Utility/Unique.h
 mode change 100755 => 100644 ippl/src/Utility/User.cpp
 mode change 100755 => 100644 ippl/src/Utility/User.h
 mode change 100755 => 100644 ippl/src/Utility/UserList.cpp
 mode change 100755 => 100644 ippl/src/Utility/UserList.h
 mode change 100755 => 100644 ippl/src/Utility/Vec.h
 mode change 100755 => 100644 ippl/src/Utility/my_auto_ptr.h
 mode change 100755 => 100644 ippl/src/Utility/vmap.h
 mode change 100755 => 100644 ippl/src/Utility/vmap.hpp
 mode change 100755 => 100644 ippl/src/config.h.in
 mode change 100755 => 100644 ippl/test/6dtrack/.job
 mode change 100755 => 100644 ippl/test/6dtrack/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTConfigure/GTConfigure.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/GTDistribution.cc
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/GTDistribution.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/hammersley.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/hammersley.h
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/makeranlib
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/ranlib.cc
 mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/ranlib.h
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/ACG.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/ACG.h
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Elements.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTElemData.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTGenElement.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTIBS.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTMultipoleMap.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTRFCavityMap.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTRadiation.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTRecquadMap.hh
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/IBSProcess.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/IBSProcess.h
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Merlin/PhotonSpectrumGen.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.h
 mode change 100755 => 100644 ippl/test/6dtrack/Makefile
 mode change 100755 => 100644 ippl/test/6dtrack/Makefile.def
 mode change 100755 => 100644 ippl/test/6dtrack/dsmc6d.cpp
 mode change 100755 => 100644 ippl/test/6dtrack/lat1.dat
 mode change 100755 => 100644 ippl/test/6dtrack/lat60.dat
 mode change 100755 => 100644 ippl/test/6dtrack/lat61.dat
 mode change 100755 => 100644 ippl/test/6dtrack/lat64.dat
 mode change 100755 => 100644 ippl/test/6dtrack/lat65.dat
 mode change 100755 => 100644 ippl/test/6dtrack/lat66.dat
 mode change 100755 => 100644 ippl/test/AMR/AmrDoxyfile
 mode change 100755 => 100644 ippl/test/AMR/AmrOpal.cpp
 mode change 100755 => 100644 ippl/test/AMR/AmrOpal.h
 mode change 100755 => 100644 ippl/test/AMR/AmrOpal_F.h
 mode change 100755 => 100644 ippl/test/AMR/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/AMR/Distribution.cpp
 mode change 100755 => 100644 ippl/test/AMR/Distribution.h
 mode change 100755 => 100644 ippl/test/AMR/H5Reader.cpp
 mode change 100755 => 100644 ippl/test/AMR/H5Reader.h
 mode change 100755 => 100644 ippl/test/AMR/MGTSolver.cpp
 mode change 100755 => 100644 ippl/test/AMR/MGTSolver.h
 mode change 100755 => 100644 ippl/test/AMR/README
 mode change 100755 => 100644 ippl/test/AMR/Solver.cpp
 mode change 100755 => 100644 ippl/test/AMR/Solver.h
 mode change 100755 => 100644 ippl/test/AMR/Tagging_nd.f90
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/AssignMultiLevelDensity.cpp
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/Solver.cpp
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/Solver.h
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/inputs
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/testDeposition.cpp
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/testDepositionFail.cpp
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/testGeometry.cpp
 mode change 100755 => 100644 ippl/test/AMR/amrex-only/testSolverFail.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/AmrPartBunch.h
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PartBunch.h
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PartBunchBase.h
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PoissonProblems.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PoissonProblems.h
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/error.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/iterative.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testGaussian.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testGridSolve.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testH5Read.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testHdf5.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testMultiBunch.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testOldPerformance.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testOldPlasma.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testPerfectLoadBalancing.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testReal.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testSolver.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testTracker.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testUnifSphere.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testUnifSphereGrid.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testUniform.cpp
 mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/toFile.cpp
 mode change 100755 => 100644 ippl/test/AMR/helper_functions.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/AmrParticleBase.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/AmrParticleBase.hpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/LevelNumCounter.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/PartBunchAmr.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/ParticleAmrLayout.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/inputs
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testAmrPartBase.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testCRTP.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testDomainTransformSolve.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testFromH5.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testGaussian.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testInitGuessSolver.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testInitialBox.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testLayout.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testMultipleSources.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testNewTracker.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testPerformance.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testPlasma.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testScatterAMReX.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testTagging.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testUnifBox.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testUnifSphere.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/AmrPartBunch.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/PartBunch.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/PartBunchBase.h
 mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/testAdapterPattern.cpp
 mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/testCRTP.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/Amesos2BottomSolver.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/Amesos2BottomSolver.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrBoundary.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrDirichletBoundary.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrInterpolater.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrLagrangeInterpolater.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrLagrangeInterpolater.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGrid.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGrid.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridCore.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridDefs.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridLevel.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrOpenBoundary.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPCInterpolater.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPCInterpolater.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPeriodicBoundary.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPreconditioner.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrRedistributor.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrRedistributor.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrSmoother.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrSmoother.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrTrilinearInterpolater.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrTrilinearInterpolater.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/BelosBottomSolver.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/BelosBottomSolver.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/BottomSolver.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/AMR/trilinos/FFTBottomSolver.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/FFTBottomSolver.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/Ifpack2Preconditioner.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/Ifpack2Preconditioner.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuBottomSolver.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuBottomSolver.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuPreconditioner.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuPreconditioner.hpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/build.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testAmrMultigrid.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testBitPattern.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testBoundaryMatrix.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testBoundaryVector.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testCopy.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testInterpolationMatrix.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testLagrange.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testNoFine.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testPoissonMatrix.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testRestrictionMatrix.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testSmootherMatrix.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testSolverComparison.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testSpecialPoissonMatrix.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testTrilinosSolver.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/testWithFine.cpp
 mode change 100755 => 100644 ippl/test/AMR/trilinos/tools.h
 mode change 100755 => 100644 ippl/test/AMR/trilinos/trilinos2ippl.cpp
 mode change 100755 => 100644 ippl/test/AMR/writePlotFile.H
 mode change 100755 => 100644 ippl/test/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/Cartesian/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/Cartesian/Makefile
 mode change 100755 => 100644 ippl/test/Cartesian/TestCartesian-1.cpp
 mode change 100755 => 100644 ippl/test/CavityTrack/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/CavityTrack/CavitySolver.cpp
 mode change 100755 => 100644 ippl/test/CavityTrack/CavitySolver.h
 mode change 100755 => 100644 ippl/test/CavityTrack/ChargedParticles/ChargedParticles.hh
 mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/Distribution.cpp
 mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/Distribution.hh
 mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/makefile
 mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/ranlib.cc
 mode change 100755 => 100644 ippl/test/CavityTrack/Makefile
 mode change 100755 => 100644 ippl/test/CavityTrack/TestRun/fort.22
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/CavAccel-1.mws
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/ReadMe
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/makePlot.glp
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/swk/getPosVel.swk
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/swk/sk-Tint.swk
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/swk/sk-Tint2.swk
 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/trial.mws
 mode change 100755 => 100644 ippl/test/CavityTrack/cavitytrack.cpp
 mode change 100755 => 100644 ippl/test/FFT/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/FFT/Makefile
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/TestA-DAccuracy.ps
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestD128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestD256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestD512.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestD128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestD256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestD512.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT.cpp
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestRC.cpp
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA1024.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA512.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB1024.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB512.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC1024.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC128.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC16.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC32.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC512.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC64.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestD256.out
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/makePlot.gpl
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/fftspeed.cpp
 mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/makePlot.gpl
 mode change 100755 => 100644 ippl/test/FFT/TestFFT-1.cpp
 mode change 100755 => 100644 ippl/test/FFT/TestFFT-2.cpp
 mode change 100755 => 100644 ippl/test/FFT/TestFFT-XT3.cpp
 mode change 100755 => 100644 ippl/test/FFT/TestFFT.cpp.org
 mode change 100755 => 100644 ippl/test/FFT/TestFFTCos.cpp
 mode change 100755 => 100644 ippl/test/FFT/TestFFTSin.cpp
 mode change 100755 => 100644 ippl/test/FFT/TestRCMIC.cpp
 mode change 100755 => 100644 ippl/test/FFT/fftspeed.cpp
 mode change 100755 => 100644 ippl/test/FFT/nodefile
 mode change 100755 => 100644 ippl/test/FFT/run
 mode change 100755 => 100644 ippl/test/Hal/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/Hal/Makefile
 mode change 100755 => 100644 ippl/test/Hal/yfld_q1.cpp
 mode change 100755 => 100644 ippl/test/Hal/yfld_q1_err.txt
 mode change 100755 => 100644 ippl/test/Hal/yfld_q2.cpp
 mode change 100755 => 100644 ippl/test/Makefile.def
 mode change 100755 => 100644 ippl/test/PwrSpec/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/PwrSpec/Makefile
 mode change 100755 => 100644 ippl/test/PwrSpec/PwrSpec.cpp
 mode change 100755 => 100644 ippl/test/PwrSpec/PwrSpec.h
 mode change 100755 => 100644 ippl/test/PwrSpec/testPwrSpec.cpp
 mode change 100755 => 100644 ippl/test/adaTests/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/adaTests/Makefile
 mode change 100755 => 100644 ippl/test/adaTests/TestDot1.cpp
 mode change 100755 => 100644 ippl/test/adaTests/TestDot2.cpp
 mode change 100755 => 100644 ippl/test/hdf5/.depend
 mode change 100755 => 100644 ippl/test/hdf5/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/hdf5/Makefile
 mode change 100755 => 100644 ippl/test/hdf5/hdf5para-1.inp
 mode change 100755 => 100644 ippl/test/hdf5/hdf5para-2.inp
 mode change 100755 => 100644 ippl/test/hdf5/hdf5read-1.cpp
 mode change 100755 => 100644 ippl/test/hdf5/hdf5write-1.cpp
 mode change 100755 => 100644 ippl/test/hdf5/testHdf5-1.cpp
 mode change 100755 => 100644 ippl/test/nok/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/nok/t3.cpp
 mode change 100755 => 100644 ippl/test/parallel/2ddens.cpp
 mode change 100755 => 100644 ippl/test/parallel/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/parallel/Makefile
 mode change 100755 => 100644 ippl/test/parallel/dualmpi.cpp
 mode change 100755 => 100644 ippl/test/parallel/reduce-1.cpp
 mode change 100755 => 100644 ippl/test/parallel/reduce-2.cpp
 mode change 100755 => 100644 ippl/test/parallel/volley.cpp
 mode change 100755 => 100644 ippl/test/particle/1dperiodic.cpp
 mode change 100755 => 100644 ippl/test/particle/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/particle/CacheTest.cpp
 mode change 100755 => 100644 ippl/test/particle/ChargedParticleFactory.hpp
 mode change 100755 => 100644 ippl/test/particle/DiscParticle.cpp
 mode change 100755 => 100644 ippl/test/particle/FFTFieldSolver.cpp
 mode change 100755 => 100644 ippl/test/particle/FieldCompare.cpp
 mode change 100755 => 100644 ippl/test/particle/Makefile
 mode change 100755 => 100644 ippl/test/particle/PIC2d.cpp
 mode change 100755 => 100644 ippl/test/particle/PIC3d.cpp
 mode change 100755 => 100644 ippl/test/particle/PIC3dBCo-p.cpp
 mode change 100755 => 100644 ippl/test/particle/PIC3dBCo-p.cpp.nok
 mode change 100755 => 100644 ippl/test/particle/PairTest.cpp
 mode change 100755 => 100644 ippl/test/particle/VTKFieldWriterParallel.hpp
 mode change 100755 => 100644 ippl/test/particle/chsr-1.cpp
 mode change 100755 => 100644 ippl/test/particle/chsr-2.cpp
 mode change 100755 => 100644 ippl/test/particle/cref.cpp
 mode change 100755 => 100644 ippl/test/particle/interpolate.cpp
 mode change 100755 => 100644 ippl/test/particle/loadbalance.cpp
 mode change 100755 => 100644 ippl/test/particle/neighNodeTest1.cpp
 mode change 100755 => 100644 ippl/test/particle/nodefile
 mode change 100755 => 100644 ippl/test/particle/p3m3d.cpp
 mode change 100755 => 100644 ippl/test/particle/p3m3dHeating.cpp
 mode change 100755 => 100644 ippl/test/particle/p3m3dMicrobunching.cpp
 mode change 100755 => 100644 ippl/test/particle/p3m3dRegressionTests.cpp
 mode change 100755 => 100644 ippl/test/particle/p3m3dTwoStream.cpp
 mode change 100755 => 100644 ippl/test/particle/p3m3dTwoStreamParallel.cpp
 mode change 100755 => 100644 ippl/test/particle/p3m3dplot.p
 mode change 100755 => 100644 ippl/test/particle/p3m3dreadme.txt
 mode change 100755 => 100644 ippl/test/particle/parexp.cpp
 mode change 100755 => 100644 ippl/test/particle/pbconds.cpp
 mode change 100755 => 100644 ippl/test/particle/pbconds3D.cpp
 mode change 100755 => 100644 ippl/test/particle/pbconds_vis.cpp
 mode change 100755 => 100644 ippl/test/particle/pdbtest.cpp
 mode change 100755 => 100644 ippl/test/particle/run
 mode change 100755 => 100644 ippl/test/particle/salman-1.cpp
 mode change 100755 => 100644 ippl/test/particle/spatial.cpp
 mode change 100755 => 100644 ippl/test/particle/spatial.cpp.org
 mode change 100755 => 100644 ippl/test/particle/test-scatter-1.cpp
 mode change 100755 => 100644 ippl/test/particle/test-update-1.cpp
 mode change 100755 => 100644 ippl/test/particle/test-update-1.sge
 mode change 100755 => 100644 ippl/test/particle/typtest.cpp
 mode change 100755 => 100644 ippl/test/particle/uniform.cpp
 mode change 100755 => 100644 ippl/test/particle/vlasovBB1D.cpp
 mode change 100755 => 100644 ippl/test/poissonsolvers/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/poissonsolvers/Makefile
 mode change 100755 => 100644 ippl/test/poissonsolvers/ReadMe
 mode change 100755 => 100644 ippl/test/poissonsolvers/data1.dat
 mode change 100755 => 100644 ippl/test/poissonsolvers/femmgTest.cpp
 mode change 100755 => 100644 ippl/test/simple-new/.depend
 mode change 100755 => 100644 ippl/test/simple-new/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/simple-new/Makefile
 mode change 100755 => 100644 ippl/test/simple-new/id-test1.cpp
 mode change 100755 => 100644 ippl/test/simple-new/memcheck-1.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t1.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t2.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t3.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t4.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t5.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t6.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t7.cpp
 mode change 100755 => 100644 ippl/test/simple-new/t8.cpp
 mode change 100755 => 100644 ippl/test/simple/.depend
 mode change 100755 => 100644 ippl/test/simple/2ddiffusion-1.cpp
 mode change 100755 => 100644 ippl/test/simple/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/simple/Clock.h
 mode change 100755 => 100644 ippl/test/simple/FVecOps.cpp
 mode change 100755 => 100644 ippl/test/simple/Makefile
 mode change 100755 => 100644 ippl/test/simple/ScalarAdvection.cpp
 mode change 100755 => 100644 ippl/test/simple/Slice.cpp
 mode change 100755 => 100644 ippl/test/simple/TestAverageVC_CV.cpp
 mode change 100755 => 100644 ippl/test/simple/TestBC.cpp
 mode change 100755 => 100644 ippl/test/simple/TestCartesianCentering.cpp
 mode change 100755 => 100644 ippl/test/simple/TestEureka.cpp
 mode change 100755 => 100644 ippl/test/simple/TestFieldDebug.cpp
 mode change 100755 => 100644 ippl/test/simple/TestFieldDebug2.cpp
 mode change 100755 => 100644 ippl/test/simple/TestParticleDebug.cpp
 mode change 100755 => 100644 ippl/test/simple/TestParticleDebugParallel.cpp
 mode change 100755 => 100644 ippl/test/simple/TestPeriodicBC.cpp
 mode change 100755 => 100644 ippl/test/simple/TestPeriodicBC.txt
 mode change 100755 => 100644 ippl/test/simple/TestPeriodicBCGuardCell1.txt
 mode change 100755 => 100644 ippl/test/simple/TestPeriodicBCGuardCell2.txt
 mode change 100755 => 100644 ippl/test/simple/TestScalarIndexing.cpp
 mode change 100755 => 100644 ippl/test/simple/TestTensorUnaryOps.cpp
 mode change 100755 => 100644 ippl/test/simple/balance.cpp
 mode change 100755 => 100644 ippl/test/simple/bc.cpp
 mode change 100755 => 100644 ippl/test/simple/bc2.cpp
 mode change 100755 => 100644 ippl/test/simple/bc3.cpp
 mode change 100755 => 100644 ippl/test/simple/bc_convert.cpp
 mode change 100755 => 100644 ippl/test/simple/bool.cpp
 mode change 100755 => 100644 ippl/test/simple/component.cpp
 mode change 100755 => 100644 ippl/test/simple/compressed.cpp
 mode change 100755 => 100644 ippl/test/simple/conejo_balance.cpp
 mode change 100755 => 100644 ippl/test/simple/ctoc.cpp
 mode change 100755 => 100644 ippl/test/simple/cv.cpp
 mode change 100755 => 100644 ippl/test/simple/doof2d_a.cpp
 mode change 100755 => 100644 ippl/test/simple/doof2d_complex.cpp
 mode change 100755 => 100644 ippl/test/simple/doof2d_file.cpp
 mode change 100755 => 100644 ippl/test/simple/doof2d_simple.cpp
 mode change 100755 => 100644 ippl/test/simple/doof2d_vis.cpp
 mode change 100755 => 100644 ippl/test/simple/doof3d_file.cpp
 mode change 100755 => 100644 ippl/test/simple/doof3d_vis.cpp
 mode change 100755 => 100644 ippl/test/simple/fermi-dirac-field.cpp
 mode change 100755 => 100644 ippl/test/simple/fivefields.cpp
 mode change 100755 => 100644 ippl/test/simple/float.cpp
 mode change 100755 => 100644 ippl/test/simple/flyercode.cpp
 mode change 100755 => 100644 ippl/test/simple/funcface.cpp
 mode change 100755 => 100644 ippl/test/simple/gcprint.cpp
 mode change 100755 => 100644 ippl/test/simple/itercompress.cpp
 mode change 100755 => 100644 ippl/test/simple/left.cpp
 mode change 100755 => 100644 ippl/test/simple/minmax.cpp
 mode change 100755 => 100644 ippl/test/simple/patches.cpp
 mode change 100755 => 100644 ippl/test/simple/reduce.cpp
 mode change 100755 => 100644 ippl/test/simple/reduceloc.cpp
 mode change 100755 => 100644 ippl/test/simple/repartition.cpp
 mode change 100755 => 100644 ippl/test/simple/repartition.cpp.org
 mode change 100755 => 100644 ippl/test/simple/send
 mode change 100755 => 100644 ippl/test/simple/single.cpp
 mode change 100755 => 100644 ippl/test/simple/slices.cpp
 mode change 100755 => 100644 ippl/test/simple/soffset.cpp
 mode change 100755 => 100644 ippl/test/simple/subdivide.cpp
 mode change 100755 => 100644 ippl/test/simple/subreadtest.cpp
 mode change 100755 => 100644 ippl/test/simple/t.cpp
 mode change 100755 => 100644 ippl/test/simple/t1.cpp
 mode change 100755 => 100644 ippl/test/simple/t2.cpp
 mode change 100755 => 100644 ippl/test/simple/t3.cpp
 mode change 100755 => 100644 ippl/test/simple/t4.cpp
 mode change 100755 => 100644 ippl/test/simple/t5.cpp
 mode change 100755 => 100644 ippl/test/simple/t6.cpp
 mode change 100755 => 100644 ippl/test/simple/t7.cpp
 mode change 100755 => 100644 ippl/test/simple/t8.cpp
 mode change 100755 => 100644 ippl/test/simple/transpose.cpp
 mode change 100755 => 100644 ippl/test/simple/tv.cpp
 mode change 100755 => 100644 ippl/test/simple/tz.cpp
 mode change 100755 => 100644 ippl/test/simple/vc.cpp
 mode change 100755 => 100644 ippl/test/sindex/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/sindex/Makefile
 mode change 100755 => 100644 ippl/test/sindex/TestSIndex.cpp
 mode change 100755 => 100644 ippl/test/sindex/compsindex.cpp
 mode change 100755 => 100644 ippl/test/sindex/sindex.cpp
 mode change 100755 => 100644 ippl/test/sindex/subfield.cpp
 mode change 100755 => 100644 ippl/test/sindex/vertcell.cpp
 mode change 100755 => 100644 ippl/test/speed/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/speed/Makefile
 mode change 100755 => 100644 ippl/test/speed/diskfield.cpp
 mode change 100755 => 100644 ippl/test/speed/gcspeed.cpp
 mode change 100755 => 100644 ippl/test/speed/make.out
 mode change 100755 => 100644 ippl/test/speed/particle_simple.cpp
 mode change 100755 => 100644 ippl/test/speed/reducespeed.cpp
 mode change 100755 => 100644 ippl/test/speed/speed1.cpp
 mode change 100755 => 100644 ippl/test/speed/stencil1.cpp
 mode change 100755 => 100644 ippl/test/speed/stencil_c.c
 mode change 100755 => 100644 ippl/test/toyfdtf/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/toyfdtf/Makefile
 mode change 100755 => 100644 ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.cpp
 mode change 100755 => 100644 ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h
 mode change 100755 => 100644 ippl/test/toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp
 mode change 100755 => 100644 ippl/test/toyfdtf/ipplToyFDTD2.cpp
 mode change 100755 => 100644 ippl/test/ttrack/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/ttrack/Doxyfile
 mode change 100755 => 100644 ippl/test/ttrack/GTChargedParticles/GTChargedParticles.cpp
 mode change 100755 => 100644 ippl/test/ttrack/GTChargedParticles/GTChargedParticles.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTConfigure/GTConfigure.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/GTDistribution.cc
 mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/GTDistribution.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/hammersley.cpp
 mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/hammersley.h
 mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/ranlib.cc
 mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/ranlib.h
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/ACG.cpp
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/ACG.h
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/Elements.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTElemData.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTGenElement.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTIBS.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTMultipoleMap.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTRFCavityMap.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTRadiation.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTRecquadMap.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/IBSProcess.cpp
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/IBSProcess.h
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/Merlin/PhotonSpectrumGen.cpp
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.cpp
 mode change 100755 => 100644 ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.h
 mode change 100755 => 100644 ippl/test/ttrack/GTUtilities/GTConst.hh
 mode change 100755 => 100644 ippl/test/ttrack/GTUtilities/GTPhysics.cc
 mode change 100755 => 100644 ippl/test/ttrack/GTUtilities/GTPhysics.h
 mode change 100755 => 100644 ippl/test/ttrack/Makefile
 mode change 100755 => 100644 ippl/test/ttrack/Makefile.def
 mode change 100755 => 100644 ippl/test/ttrack/README
 mode change 100755 => 100644 ippl/test/ttrack/aur-1.dat
 mode change 100755 => 100644 ippl/test/ttrack/dsmc.cpp
 mode change 100755 => 100644 ippl/test/ttrack/report/direct.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/divrad.png
 mode change 100755 => 100644 ippl/test/ttrack/report/feynman.png
 mode change 100755 => 100644 ippl/test/ttrack/report/future.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/implementation.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/introduction.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/literature.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/longtermbehavior.png
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/aurlong.pdf
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/inter.pdf
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/lowemi.dat
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/presentation.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/scaling.dat
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/sls-acceptancevslifetime.dat
 mode change 100755 => 100644 ippl/test/ttrack/report/presentation/sls-longterm.pdf
 mode change 100755 => 100644 ippl/test/ttrack/report/radius.png
 mode change 100755 => 100644 ippl/test/ttrack/report/radius2.png
 mode change 100755 => 100644 ippl/test/ttrack/report/report.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/results.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/simulation.tex
 mode change 100755 => 100644 ippl/test/ttrack/report/theory.tex
 mode change 100755 => 100644 ippl/test/ttrack/sls-1.dat
 mode change 100755 => 100644 ippl/test/ttrack/touscheklifetime.nb
 mode change 100755 => 100644 ippl/test/twostream-1/.depend
 mode change 100755 => 100644 ippl/test/twostream-1/CMakeLists.txt
 mode change 100755 => 100644 ippl/test/twostream-1/Makefile
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Flagger.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Flagger.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/IdealMapper.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/IdealMapper.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/LinearMapper.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/LinearMapper.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Mapper.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Mapper.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartBunch.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartBunch.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartData.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartData.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Particle.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Particle.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Surveyor.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Surveyor.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinMapper.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinMapper.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinTracker.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinTracker.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Tracker.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Tracker.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/rbendmap.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/MemoryManagement/OwnPtr.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/MemoryManagement/Pointer.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/MemoryManagement/RCObject.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/AbsFileStream.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/AbsFileStream.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/ClassicParser.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/ClassicParser.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/FileStream.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/FileStream.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Parser.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Parser.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/SimpleStatement.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/SimpleStatement.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Statement.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Statement.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/StringStream.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/StringStream.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TerminalStream.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TerminalStream.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Token.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Token.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TokenStream.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TokenStream.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Physics/Physics.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Physics/Physics.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ArithmeticError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ArithmeticError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/AttributeError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/AttributeError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ClassicException.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ClassicException.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ConvergenceError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ConvergenceError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DivideError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DivideError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DomainError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DomainError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/EigenvalueError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/EigenvalueError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/FormatError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/FormatError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Gauss.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Gauss.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/InverseGauss.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/InverseGauss.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/LogicalError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/LogicalError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/NormalFormError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/NormalFormError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/OverflowError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/OverflowError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ParseError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ParseError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Random.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Random.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/RangeError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/RangeError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SizeError.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SizeError.h
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/User0.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/User1.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/User2.cpp
 mode change 100755 => 100644 ippl/test/twostream-1/anal.gpl
 mode change 100755 => 100644 ippl/test/twostream-1/anal.kumac
 mode change 100755 => 100644 ippl/test/twostream-1/analtest.gpl
 mode change 100755 => 100644 ippl/test/twostream-1/constfoc-1.inp
 mode change 100755 => 100644 ippl/test/twostream-1/data1.dat
 mode change 100755 => 100644 ippl/test/twostream-1/data2.dat
 mode change 100755 => 100644 ippl/test/twostream-1/driftsc-1.inp
 mode change 100755 => 100644 ippl/test/twostream-1/driftsc-2.inp
 mode change 100755 => 100644 ippl/test/twostream-1/test-1.inp
 mode change 100755 => 100644 ippl/test/twostream-1/test-2.inp
 mode change 100755 => 100644 ippl/test/twostream-1/twostream-2.cpp
 mode change 100755 => 100644 opt-pilot/.gitignore
 mode change 100755 => 100644 opt-pilot/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Comm/CommSplitter.h
 mode change 100755 => 100644 opt-pilot/Comm/MasterGraph/NDimMesh.h
 mode change 100755 => 100644 opt-pilot/Comm/MasterGraph/NoMasterGraph.h
 mode change 100755 => 100644 opt-pilot/Comm/MasterGraph/SocialNetworkGraph.h
 mode change 100755 => 100644 opt-pilot/Comm/MasterNode.h
 mode change 100755 => 100644 opt-pilot/Comm/Splitter/GeometricStrategy.h
 mode change 100755 => 100644 opt-pilot/Comm/Splitter/ManyMasterSplit.h
 mode change 100755 => 100644 opt-pilot/Comm/Splitter/RandomStrategy.h
 mode change 100755 => 100644 opt-pilot/Comm/Splitter/ReadSplitFromFile.h
 mode change 100755 => 100644 opt-pilot/Comm/Splitter/SplitStrategy.h
 mode change 100755 => 100644 opt-pilot/Comm/Topology/CommTopology.h
 mode change 100755 => 100644 opt-pilot/Comm/Topology/NoCommTopology.h
 mode change 100755 => 100644 opt-pilot/Comm/types.h
 mode change 100755 => 100644 opt-pilot/Doxyfile
 mode change 100755 => 100644 opt-pilot/Drivers/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Drivers/pisa-opal/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Drivers/pisa-opal/pisa-opal.cpp
 mode change 100755 => 100644 opt-pilot/Drivers/pisa-standalone/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Drivers/pisa-standalone/pisa-standalone.cpp
 mode change 100755 => 100644 opt-pilot/Expression/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Expression/Expression.h
 mode change 100755 => 100644 opt-pilot/Expression/FromFile.cpp
 mode change 100755 => 100644 opt-pilot/Expression/FromFile.h
 mode change 100755 => 100644 opt-pilot/Expression/GlobalFunctions.h
 mode change 100755 => 100644 opt-pilot/Expression/Parser/annotation.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/ast.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/error_handler.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/evaluator.cpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/evaluator.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/expression.cpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/expression.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/expression_def.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/function.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/requirements.hpp
 mode change 100755 => 100644 opt-pilot/Expression/Parser/skipper.hpp
 mode change 100755 => 100644 opt-pilot/Expression/ProbeVariable.h
 mode change 100755 => 100644 opt-pilot/Expression/PythonExpr.h
 mode change 100755 => 100644 opt-pilot/Expression/RadialPeak.cpp
 mode change 100755 => 100644 opt-pilot/Expression/RadialPeak.h
 mode change 100755 => 100644 opt-pilot/Expression/SDDSVariable.h
 mode change 100755 => 100644 opt-pilot/Expression/SumErrSq.cpp
 mode change 100755 => 100644 opt-pilot/Expression/SumErrSq.h
 mode change 100755 => 100644 opt-pilot/Expression/SumErrSqRadialPeak.cpp
 mode change 100755 => 100644 opt-pilot/Expression/SumErrSqRadialPeak.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/BlendCrossover.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/FixedPisaNsga2.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/IndependentBitMutation.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/Individual.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/NaiveOnePointCrossover.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/NaiveUniformCrossover.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/OneBitMutation.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/Population.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/SimulatedBinaryCrossover.h
 mode change 100755 => 100644 opt-pilot/Optimizer/EA/Variator.h
 mode change 100755 => 100644 opt-pilot/Optimizer/Optimizer.h
 mode change 100755 => 100644 opt-pilot/Pilot/Pilot.h
 mode change 100755 => 100644 opt-pilot/Pilot/Poller.h
 mode change 100755 => 100644 opt-pilot/Pilot/Worker.h
 mode change 100755 => 100644 opt-pilot/Problems/FON.h
 mode change 100755 => 100644 opt-pilot/Problems/ProblemInterface.h
 mode change 100755 => 100644 opt-pilot/README.mkd
 mode change 100755 => 100644 opt-pilot/Simulation/FunctionEvaluator.cpp
 mode change 100755 => 100644 opt-pilot/Simulation/FunctionEvaluator.h
 mode change 100755 => 100644 opt-pilot/Simulation/GenerateOpalSimulation.h
 mode change 100755 => 100644 opt-pilot/Simulation/Simulation.h
 mode change 100755 => 100644 opt-pilot/Tests/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Tests/CmdArgumentsTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/ExpressionTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/FromFileExpressionTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/HashNameGeneratorTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/Homotopy/Problem.in
 mode change 100755 => 100644 opt-pilot/Tests/IndividualTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/MPIHelperTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/ManagedIDsTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/Opal/FiPha3Opt1.data
 mode change 100755 => 100644 opt-pilot/Tests/Opal/FiPha3Opt1.tmpl
 mode change 100755 => 100644 opt-pilot/Tests/Opal/fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat
 mode change 100755 => 100644 opt-pilot/Tests/Opal/fieldmaps/NEW_SINGLE_SOL_NOFRINGE_OPAL.dat
 mode change 100755 => 100644 opt-pilot/Tests/Opal/nsga2/nsga2_param.txt
 mode change 100755 => 100644 opt-pilot/Tests/OpalInputFileParserTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/PisaStandAlone/Problem.in
 mode change 100755 => 100644 opt-pilot/Tests/PisaStandAlone/nsga2/nsga2_param.txt
 mode change 100755 => 100644 opt-pilot/Tests/PopulationTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/PythonExprTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/SDDSParserTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/SumErrSqExpressionTest.cpp
 mode change 100755 => 100644 opt-pilot/Tests/generatesim.cpp
 mode change 100755 => 100644 opt-pilot/Tests/gentest.data
 mode change 100755 => 100644 opt-pilot/Tests/gentest.tmpl
 mode change 100755 => 100644 opt-pilot/Tests/resources/fromfile_test.dat
 mode change 100755 => 100644 opt-pilot/Tests/resources/fromfile_test2.dat
 mode change 100755 => 100644 opt-pilot/Tests/resources/measurement_test.dat
 mode change 100755 => 100644 opt-pilot/Tests/resources/test.in
 mode change 100755 => 100644 opt-pilot/Tests/resources/test.py
 mode change 100755 => 100644 opt-pilot/Tests/resources/test.stat
 mode change 100755 => 100644 opt-pilot/Tests/runsim.cpp
 mode change 100755 => 100644 opt-pilot/Tests/schedsim.cpp
 mode change 100755 => 100644 opt-pilot/Util/AsyncSendBuffers.h
 mode change 100755 => 100644 opt-pilot/Util/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/Util/CmdArguments.cpp
 mode change 100755 => 100644 opt-pilot/Util/CmdArguments.h
 mode change 100755 => 100644 opt-pilot/Util/CommentAnnotatedInputFileParser.cpp
 mode change 100755 => 100644 opt-pilot/Util/CommentAnnotatedInputFileParser.h
 mode change 100755 => 100644 opt-pilot/Util/HashNameGenerator.h
 mode change 100755 => 100644 opt-pilot/Util/InputFileParser.h
 mode change 100755 => 100644 opt-pilot/Util/MPIHelper.cpp
 mode change 100755 => 100644 opt-pilot/Util/MPIHelper.h
 mode change 100755 => 100644 opt-pilot/Util/ManagedIDs.h
 mode change 100755 => 100644 opt-pilot/Util/OpalInputFileParser.h
 mode change 100755 => 100644 opt-pilot/Util/OptPilotException.h
 mode change 100755 => 100644 opt-pilot/Util/PeakReader.cpp
 mode change 100755 => 100644 opt-pilot/Util/PeakReader.h
 mode change 100755 => 100644 opt-pilot/Util/PlainInputFileParser.h
 mode change 100755 => 100644 opt-pilot/Util/ProbeReader.cpp
 mode change 100755 => 100644 opt-pilot/Util/ProbeReader.h
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser.h
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/SDDSParserException.h
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/array.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/array.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/array_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/associate.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/associate.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/associate_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/ast.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/ast.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/ast_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/column.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/column.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/column_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/data.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/data.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/data_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/description.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/description.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/description_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/error_handler.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/file.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/file.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/file_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/include.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/include.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/include_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/parameter.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/parameter.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/parameter_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/skipper.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/version.cpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/version.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSParser/version_def.hpp
 mode change 100755 => 100644 opt-pilot/Util/SDDSReader.h
 mode change 100755 => 100644 opt-pilot/Util/Statistics.h
 mode change 100755 => 100644 opt-pilot/Util/Trace/CoutSink.h
 mode change 100755 => 100644 opt-pilot/Util/Trace/FileSink.h
 mode change 100755 => 100644 opt-pilot/Util/Trace/MyPid.h
 mode change 100755 => 100644 opt-pilot/Util/Trace/Timestamp.h
 mode change 100755 => 100644 opt-pilot/Util/Trace/Trace.h
 mode change 100755 => 100644 opt-pilot/Util/Trace/TraceComponent.h
 mode change 100755 => 100644 opt-pilot/Util/Types.h
 mode change 100755 => 100644 opt-pilot/config.h.in
 mode change 100755 => 100644 opt-pilot/extlib/CMakeLists.txt
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/PISA_cfg
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2.c
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2.h
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_documentation.txt
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_functions.c
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_io.c
 mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_param.txt
 mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT
 mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/LICENSE
 mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/README.TXT
 mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/avl.h
 mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/wfg.h
 mode change 100755 => 100644 src/AbstractObjects/Action.cpp
 mode change 100755 => 100644 src/AbstractObjects/Action.h
 mode change 100755 => 100644 src/AbstractObjects/Attribute.cpp
 mode change 100755 => 100644 src/AbstractObjects/Attribute.h
 mode change 100755 => 100644 src/AbstractObjects/AttributeBase.cpp
 mode change 100755 => 100644 src/AbstractObjects/AttributeBase.h
 mode change 100755 => 100644 src/AbstractObjects/AttributeHandler.cpp
 mode change 100755 => 100644 src/AbstractObjects/AttributeHandler.h
 mode change 100755 => 100644 src/AbstractObjects/BeamSequence.cpp
 mode change 100755 => 100644 src/AbstractObjects/BeamSequence.h
 mode change 100755 => 100644 src/AbstractObjects/CMakeLists.txt
 mode change 100755 => 100644 src/AbstractObjects/Definition.cpp
 mode change 100755 => 100644 src/AbstractObjects/Definition.h
 mode change 100755 => 100644 src/AbstractObjects/Directory.cpp
 mode change 100755 => 100644 src/AbstractObjects/Directory.h
 mode change 100755 => 100644 src/AbstractObjects/Editor.cpp
 mode change 100755 => 100644 src/AbstractObjects/Editor.h
 mode change 100755 => 100644 src/AbstractObjects/Element.cpp
 mode change 100755 => 100644 src/AbstractObjects/Element.h
 mode change 100755 => 100644 src/AbstractObjects/Expressions.h
 mode change 100755 => 100644 src/AbstractObjects/Invalidator.cpp
 mode change 100755 => 100644 src/AbstractObjects/Invalidator.h
 mode change 100755 => 100644 src/AbstractObjects/Object.cpp
 mode change 100755 => 100644 src/AbstractObjects/Object.h
 mode change 100755 => 100644 src/AbstractObjects/ObjectFunction.cpp
 mode change 100755 => 100644 src/AbstractObjects/ObjectFunction.h
 mode change 100755 => 100644 src/AbstractObjects/OpalData.cpp
 mode change 100755 => 100644 src/AbstractObjects/OpalData.h
 mode change 100755 => 100644 src/AbstractObjects/PlaceRep.cpp
 mode change 100755 => 100644 src/AbstractObjects/PlaceRep.h
 mode change 100755 => 100644 src/AbstractObjects/RangeRep.cpp
 mode change 100755 => 100644 src/AbstractObjects/RangeRep.h
 mode change 100755 => 100644 src/AbstractObjects/Table.cpp
 mode change 100755 => 100644 src/AbstractObjects/Table.h
 mode change 100755 => 100644 src/AbstractObjects/TableRowRep.cpp
 mode change 100755 => 100644 src/AbstractObjects/TableRowRep.h
 mode change 100755 => 100644 src/AbstractObjects/ValueDefinition.cpp
 mode change 100755 => 100644 src/AbstractObjects/ValueDefinition.h
 mode change 100755 => 100644 src/Algebra/CMakeLists.txt
 mode change 100755 => 100644 src/Algebra/QRSolver.cpp
 mode change 100755 => 100644 src/Algebra/QRSolver.h
 mode change 100755 => 100644 src/Algorithms/AutophaseTracker.cpp
 mode change 100755 => 100644 src/Algorithms/AutophaseTracker.h
 mode change 100755 => 100644 src/Algorithms/BeamBeam3D.cpp
 mode change 100755 => 100644 src/Algorithms/BeamBeam3D.h
 mode change 100755 => 100644 src/Algorithms/CMakeLists.txt
 mode change 100755 => 100644 src/Algorithms/CavityAutophaser.cpp
 mode change 100755 => 100644 src/Algorithms/CavityAutophaser.h
 mode change 100755 => 100644 src/Algorithms/Ctunes.h
 mode change 100755 => 100644 src/Algorithms/Ctunes.hpp
 mode change 100755 => 100644 src/Algorithms/IndexMap.cpp
 mode change 100755 => 100644 src/Algorithms/IndexMap.h
 mode change 100755 => 100644 src/Algorithms/LieMapper.cpp
 mode change 100755 => 100644 src/Algorithms/LieMapper.h
 mode change 100755 => 100644 src/Algorithms/MPSplitIntegrator.cpp
 mode change 100755 => 100644 src/Algorithms/MPSplitIntegrator.h
 mode change 100755 => 100644 src/Algorithms/NilTracker.cpp
 mode change 100755 => 100644 src/Algorithms/NilTracker.h
 mode change 100755 => 100644 src/Algorithms/OrbitThreader.cpp
 mode change 100755 => 100644 src/Algorithms/OrbitThreader.h
 mode change 100755 => 100644 src/Algorithms/ParallelCyclotronTracker.cpp
 mode change 100755 => 100644 src/Algorithms/ParallelCyclotronTracker.h
 mode change 100755 => 100644 src/Algorithms/ParallelSliceTracker.cpp
 mode change 100755 => 100644 src/Algorithms/ParallelSliceTracker.h
 mode change 100755 => 100644 src/Algorithms/ParallelTTracker.cpp
 mode change 100755 => 100644 src/Algorithms/ParallelTTracker.h
 mode change 100755 => 100644 src/Algorithms/StatisticalErrors.cpp
 mode change 100755 => 100644 src/Algorithms/StatisticalErrors.h
 mode change 100755 => 100644 src/Algorithms/StatisticalErrorsUtilities.cpp
 mode change 100755 => 100644 src/Algorithms/StatisticalErrorsUtilities.h
 mode change 100755 => 100644 src/Algorithms/ThickMapper.cpp
 mode change 100755 => 100644 src/Algorithms/ThickMapper.h
 mode change 100755 => 100644 src/Algorithms/ThickTracker.cpp
 mode change 100755 => 100644 src/Algorithms/ThickTracker.h
 mode change 100755 => 100644 src/Algorithms/TransportMapper.cpp
 mode change 100755 => 100644 src/Algorithms/TransportMapper.h
 mode change 100755 => 100644 src/Algorithms/bet/BetError.cpp
 mode change 100755 => 100644 src/Algorithms/bet/BetError.h
 mode change 100755 => 100644 src/Algorithms/bet/EnvelopeBunch.cpp
 mode change 100755 => 100644 src/Algorithms/bet/EnvelopeBunch.h
 mode change 100755 => 100644 src/Algorithms/bet/EnvelopeSlice.cpp
 mode change 100755 => 100644 src/Algorithms/bet/EnvelopeSlice.h
 mode change 100755 => 100644 src/Algorithms/bet/error.cpp
 mode change 100755 => 100644 src/Algorithms/bet/error.h
 mode change 100755 => 100644 src/Algorithms/bet/math/functions.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/functions.h
 mode change 100755 => 100644 src/Algorithms/bet/math/integrate.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/integrate.h
 mode change 100755 => 100644 src/Algorithms/bet/math/interpol.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/interpol.h
 mode change 100755 => 100644 src/Algorithms/bet/math/linfit.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/linfit.h
 mode change 100755 => 100644 src/Algorithms/bet/math/rk.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/rk.h
 mode change 100755 => 100644 src/Algorithms/bet/math/root.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/root.h
 mode change 100755 => 100644 src/Algorithms/bet/math/savgol.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/savgol.h
 mode change 100755 => 100644 src/Algorithms/bet/math/sort.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/sort.h
 mode change 100755 => 100644 src/Algorithms/bet/math/svdfit.cpp
 mode change 100755 => 100644 src/Algorithms/bet/math/svdfit.h
 mode change 100755 => 100644 src/Algorithms/bet/profile.cpp
 mode change 100755 => 100644 src/Algorithms/bet/profile.h
 mode change 100755 => 100644 src/Algorithms/lomb.h
 mode change 100755 => 100644 src/Algorithms/lomb.hpp
 mode change 100755 => 100644 src/Amr/AbstractAmrWriter.h
 mode change 100755 => 100644 src/Amr/AmrBoxLib.cpp
 mode change 100755 => 100644 src/Amr/AmrBoxLib.h
 mode change 100755 => 100644 src/Amr/AmrBoxLib_F.h
 mode change 100755 => 100644 src/Amr/AmrDefs.h
 mode change 100755 => 100644 src/Amr/AmrObject.cpp
 mode change 100755 => 100644 src/Amr/AmrObject.h
 mode change 100755 => 100644 src/Amr/AmrPythonWriter.cpp
 mode change 100755 => 100644 src/Amr/AmrPythonWriter.h
 mode change 100755 => 100644 src/Amr/AmrSliceWriter.cpp
 mode change 100755 => 100644 src/Amr/AmrSliceWriter.h
 mode change 100755 => 100644 src/Amr/AmrYtWriter.cpp
 mode change 100755 => 100644 src/Amr/AmrYtWriter.h
 mode change 100755 => 100644 src/Amr/BoxLibLayout.h
 mode change 100755 => 100644 src/Amr/BoxLibLayout.hpp
 mode change 100755 => 100644 src/Amr/BoxLibParticle.h
 mode change 100755 => 100644 src/Amr/BoxLibParticle.hpp
 mode change 100755 => 100644 src/Amr/CMakeLists.txt
 mode change 100755 => 100644 src/Amr/Tagging_nd.f90
 mode change 100755 => 100644 src/Aperture/Aperture.cpp
 mode change 100755 => 100644 src/Aperture/Aperture.h
 mode change 100755 => 100644 src/Aperture/CMakeLists.txt
 mode change 100755 => 100644 src/Aperture/Split.cpp
 mode change 100755 => 100644 src/Aperture/Split.h
 mode change 100755 => 100644 src/Attributes/Attributes.cpp
 mode change 100755 => 100644 src/Attributes/Attributes.h
 mode change 100755 => 100644 src/Attributes/Bool.cpp
 mode change 100755 => 100644 src/Attributes/Bool.h
 mode change 100755 => 100644 src/Attributes/BoolArray.cpp
 mode change 100755 => 100644 src/Attributes/BoolArray.h
 mode change 100755 => 100644 src/Attributes/CMakeLists.txt
 mode change 100755 => 100644 src/Attributes/Place.cpp
 mode change 100755 => 100644 src/Attributes/Place.h
 mode change 100755 => 100644 src/Attributes/Range.cpp
 mode change 100755 => 100644 src/Attributes/Range.h
 mode change 100755 => 100644 src/Attributes/Real.cpp
 mode change 100755 => 100644 src/Attributes/Real.h
 mode change 100755 => 100644 src/Attributes/RealArray.cpp
 mode change 100755 => 100644 src/Attributes/RealArray.h
 mode change 100755 => 100644 src/Attributes/Reference.cpp
 mode change 100755 => 100644 src/Attributes/Reference.h
 mode change 100755 => 100644 src/Attributes/StringArray.cpp
 mode change 100755 => 100644 src/Attributes/StringArray.h
 mode change 100755 => 100644 src/Attributes/TableRow.cpp
 mode change 100755 => 100644 src/Attributes/TableRow.h
 mode change 100755 => 100644 src/Attributes/TokenList.cpp
 mode change 100755 => 100644 src/Attributes/TokenList.h
 mode change 100755 => 100644 src/Attributes/TokenListArray.cpp
 mode change 100755 => 100644 src/Attributes/TokenListArray.h
 mode change 100755 => 100644 src/Attributes/opalstr.cpp
 mode change 100755 => 100644 src/Attributes/opalstr.h
 mode change 100755 => 100644 src/BasicActions/CMakeLists.txt
 mode change 100755 => 100644 src/BasicActions/Call.cpp
 mode change 100755 => 100644 src/BasicActions/Call.h
 mode change 100755 => 100644 src/BasicActions/Dump.cpp
 mode change 100755 => 100644 src/BasicActions/Dump.h
 mode change 100755 => 100644 src/BasicActions/DumpEMFields.cpp
 mode change 100755 => 100644 src/BasicActions/DumpEMFields.h
 mode change 100755 => 100644 src/BasicActions/DumpFields.cpp
 mode change 100755 => 100644 src/BasicActions/DumpFields.h
 mode change 100755 => 100644 src/BasicActions/Echo.cpp
 mode change 100755 => 100644 src/BasicActions/Echo.h
 mode change 100755 => 100644 src/BasicActions/Help.cpp
 mode change 100755 => 100644 src/BasicActions/Help.h
 mode change 100755 => 100644 src/BasicActions/Option.cpp
 mode change 100755 => 100644 src/BasicActions/Option.h
 mode change 100755 => 100644 src/BasicActions/PSystem.cpp
 mode change 100755 => 100644 src/BasicActions/PSystem.h
 mode change 100755 => 100644 src/BasicActions/Quit.cpp
 mode change 100755 => 100644 src/BasicActions/Quit.h
 mode change 100755 => 100644 src/BasicActions/Save.cpp
 mode change 100755 => 100644 src/BasicActions/Save.h
 mode change 100755 => 100644 src/BasicActions/Select.cpp
 mode change 100755 => 100644 src/BasicActions/Select.h
 mode change 100755 => 100644 src/BasicActions/Show.cpp
 mode change 100755 => 100644 src/BasicActions/Show.h
 mode change 100755 => 100644 src/BasicActions/Stop.cpp
 mode change 100755 => 100644 src/BasicActions/Stop.h
 mode change 100755 => 100644 src/BasicActions/System.cpp
 mode change 100755 => 100644 src/BasicActions/System.h
 mode change 100755 => 100644 src/BasicActions/Title.cpp
 mode change 100755 => 100644 src/BasicActions/Title.h
 mode change 100755 => 100644 src/BasicActions/Value.cpp
 mode change 100755 => 100644 src/BasicActions/Value.h
 mode change 100755 => 100644 src/BasicActions/What.cpp
 mode change 100755 => 100644 src/BasicActions/What.h
 mode change 100755 => 100644 src/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/AbsBeamline/AlignWrapper.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/AlignWrapper.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/AttributeSet.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/AttributeSet.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/BeamBeam.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/BeamBeam.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/BeamlineVisitor.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/BeamlineVisitor.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Bend.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Bend.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/BendBase.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/BendBase.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/AbsBeamline/Collimator.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Collimator.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Component.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Component.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Corrector.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Corrector.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Cyclotron.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Cyclotron.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/CyclotronValley.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/CyclotronValley.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Degrader.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Degrader.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Diagnostic.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Diagnostic.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Drift.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Drift.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/ElementBase.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/ElementBase.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/ElementImage.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/ElementImage.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Enge.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Enge.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Tanh.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Tanh.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Integrator.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Integrator.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Lambertson.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Lambertson.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Marker.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Marker.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Monitor.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Monitor.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Multipole.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Multipole.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/MultipoleT.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/MultipoleT.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/MultipoleT.png
 mode change 100755 => 100644 src/Classic/AbsBeamline/Offset.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Offset.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/ParallelPlate.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/ParallelPlate.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Patch.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Patch.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Probe.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Probe.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/RBend.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/RBend.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/RBend3D.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/RBend3D.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/RFCavity.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/RFCavity.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/RFQuadrupole.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/RFQuadrupole.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Ring.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Ring.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/SBend.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/SBend.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/SBend3D.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/SBend3D.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/ScalingFFAGMagnet.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/SectorFieldMapComponent.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Separator.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Separator.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Septum.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Septum.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Solenoid.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Solenoid.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Source.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Source.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/SpecificElementVisitor.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/Stripper.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/Stripper.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/TravelingWave.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/TravelingWave.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/VariableRFCavity.cpp
 mode change 100755 => 100644 src/Classic/AbsBeamline/VariableRFCavity.h
 mode change 100755 => 100644 src/Classic/AbsBeamline/multipole_t.tex
 mode change 100755 => 100644 src/Classic/Algebra/Array1D.h
 mode change 100755 => 100644 src/Classic/Algebra/Array2D.h
 mode change 100755 => 100644 src/Classic/Algebra/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Algebra/ComplexEigen.cpp
 mode change 100755 => 100644 src/Classic/Algebra/ComplexEigen.h
 mode change 100755 => 100644 src/Classic/Algebra/DoubleEigen.cpp
 mode change 100755 => 100644 src/Classic/Algebra/DoubleEigen.h
 mode change 100755 => 100644 src/Classic/Algebra/DynamicFixedPoint.cpp
 mode change 100755 => 100644 src/Classic/Algebra/DynamicFixedPoint.h
 mode change 100755 => 100644 src/Classic/Algebra/LUMatrix.h
 mode change 100755 => 100644 src/Classic/Algebra/LieMap.h
 mode change 100755 => 100644 src/Classic/Algebra/Matrix.h
 mode change 100755 => 100644 src/Classic/Algebra/NormalForm.cpp
 mode change 100755 => 100644 src/Classic/Algebra/NormalForm.h
 mode change 100755 => 100644 src/Classic/Algebra/SliceIterator.h
 mode change 100755 => 100644 src/Classic/Algebra/StaticFixedPoint.cpp
 mode change 100755 => 100644 src/Classic/Algebra/StaticFixedPoint.h
 mode change 100755 => 100644 src/Classic/Algebra/Tps.cpp
 mode change 100755 => 100644 src/Classic/Algebra/Tps.h
 mode change 100755 => 100644 src/Classic/Algebra/TpsComplex.cpp
 mode change 100755 => 100644 src/Classic/Algebra/TpsData.cpp
 mode change 100755 => 100644 src/Classic/Algebra/TpsData.h
 mode change 100755 => 100644 src/Classic/Algebra/TpsDouble.cpp
 mode change 100755 => 100644 src/Classic/Algebra/TpsMath.h
 mode change 100755 => 100644 src/Classic/Algebra/TpsMonomial.cpp
 mode change 100755 => 100644 src/Classic/Algebra/TpsMonomial.h
 mode change 100755 => 100644 src/Classic/Algebra/TpsSubstitution.h
 mode change 100755 => 100644 src/Classic/Algebra/TpsTps.cpp
 mode change 100755 => 100644 src/Classic/Algebra/Vector.h
 mode change 100755 => 100644 src/Classic/Algebra/Vps.cpp
 mode change 100755 => 100644 src/Classic/Algebra/Vps.h
 mode change 100755 => 100644 src/Classic/Algebra/VpsInvMap.h
 mode change 100755 => 100644 src/Classic/Algebra/VpsMap.h
 mode change 100755 => 100644 src/Classic/Algorithms/AbstractMapper.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/AbstractMapper.h
 mode change 100755 => 100644 src/Classic/Algorithms/AbstractTimeDependence.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/AbstractTimeDependence.h
 mode change 100755 => 100644 src/Classic/Algorithms/AbstractTracker.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/AbstractTracker.h
 mode change 100755 => 100644 src/Classic/Algorithms/AmrPartBunch.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/AmrPartBunch.h
 mode change 100755 => 100644 src/Classic/Algorithms/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Algorithms/CoordinateSystemTrafo.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/CoordinateSystemTrafo.h
 mode change 100755 => 100644 src/Classic/Algorithms/DefaultVisitor.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/DefaultVisitor.h
 mode change 100755 => 100644 src/Classic/Algorithms/Flagger.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/Flagger.h
 mode change 100755 => 100644 src/Classic/Algorithms/IdealMapper.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/IdealMapper.h
 mode change 100755 => 100644 src/Classic/Algorithms/LinearMapper.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/LinearMapper.h
 mode change 100755 => 100644 src/Classic/Algorithms/ListElem.h
 mode change 100755 => 100644 src/Classic/Algorithms/MapIntegrator.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/MapIntegrator.h
 mode change 100755 => 100644 src/Classic/Algorithms/Mapper.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/Mapper.h
 mode change 100755 => 100644 src/Classic/Algorithms/OpalParticle.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/OpalParticle.h
 mode change 100755 => 100644 src/Classic/Algorithms/OrbitTracker.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/OrbitTracker.h
 mode change 100755 => 100644 src/Classic/Algorithms/PBunchDefs.h
 mode change 100755 => 100644 src/Classic/Algorithms/PartBins.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/PartBins.h
 mode change 100755 => 100644 src/Classic/Algorithms/PartBinsCyc.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/PartBinsCyc.h
 mode change 100755 => 100644 src/Classic/Algorithms/PartBunch.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/PartBunch.h
 mode change 100755 => 100644 src/Classic/Algorithms/PartBunchBase.h
 mode change 100755 => 100644 src/Classic/Algorithms/PartBunchBase.hpp
 mode change 100755 => 100644 src/Classic/Algorithms/PartData.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/PartData.h
 mode change 100755 => 100644 src/Classic/Algorithms/PolynomialTimeDependence.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/PolynomialTimeDependence.h
 mode change 100755 => 100644 src/Classic/Algorithms/Quaternion.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/Quaternion.h
 mode change 100755 => 100644 src/Classic/Algorithms/Surveyor.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/Surveyor.h
 mode change 100755 => 100644 src/Classic/Algorithms/ThinMapper.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/ThinMapper.h
 mode change 100755 => 100644 src/Classic/Algorithms/ThinTracker.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/ThinTracker.h
 mode change 100755 => 100644 src/Classic/Algorithms/TrackIntegrator.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/TrackIntegrator.h
 mode change 100755 => 100644 src/Classic/Algorithms/Tracker.cpp
 mode change 100755 => 100644 src/Classic/Algorithms/Tracker.h
 mode change 100755 => 100644 src/Classic/Algorithms/Vektor.h
 mode change 100755 => 100644 src/Classic/Algorithms/rbendmap.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/BeamBeamRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/BeamBeamRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/BeamlineCore/CollimatorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/CollimatorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/CorrectorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/CorrectorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronValleyRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronValleyRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/DegraderRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/DegraderRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/DriftRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/DriftRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/MarkerRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/MarkerRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/MonitorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/MonitorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/MultipoleRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/MultipoleRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/Octupole.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/Octupole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/ParallelPlateRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/ParallelPlateRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/PatchRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/PatchRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/ProbeRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/ProbeRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/Quadrupole.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/Quadrupole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/RBendRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/RBendRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/RFCavityRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/RFCavityRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SBendRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SBendRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SeparatorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SeparatorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SeptumRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SeptumRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/Sextupole.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/Sextupole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SingleMultipole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SkewOctupole.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SkewOctupole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SkewQuadrupole.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SkewQuadrupole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SkewSextupole.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SkewSextupole.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SolenoidRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SolenoidRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/SourceRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/SourceRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/StripperRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/StripperRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/TravelingWaveRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/TravelingWaveRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/XCorrectorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/XCorrectorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/XMonitorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/XMonitorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/YCorrectorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/YCorrectorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineCore/YMonitorRep.cpp
 mode change 100755 => 100644 src/Classic/BeamlineCore/YMonitorRep.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3D.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3D.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3DGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3DGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Geometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Geometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Matrix3D.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Matrix3D.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/NullGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/NullGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/OffsetGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/OffsetGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/PlanarArcGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/PlanarArcGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/RBendGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/RBendGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Rotation3D.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Rotation3D.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/SRotatedGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/SRotatedGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/StraightGeometry.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/StraightGeometry.h
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Vector3D.cpp
 mode change 100755 => 100644 src/Classic/BeamlineGeometry/Vector3D.h
 mode change 100755 => 100644 src/Classic/Beamlines/Beamline.cpp
 mode change 100755 => 100644 src/Classic/Beamlines/Beamline.h
 mode change 100755 => 100644 src/Classic/Beamlines/BeamlineGeometry.cpp
 mode change 100755 => 100644 src/Classic/Beamlines/BeamlineGeometry.h
 mode change 100755 => 100644 src/Classic/Beamlines/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Beamlines/ElmPtr.cpp
 mode change 100755 => 100644 src/Classic/Beamlines/ElmPtr.h
 mode change 100755 => 100644 src/Classic/Beamlines/FlaggedBeamline.cpp
 mode change 100755 => 100644 src/Classic/Beamlines/FlaggedBeamline.h
 mode change 100755 => 100644 src/Classic/Beamlines/FlaggedElmPtr.cpp
 mode change 100755 => 100644 src/Classic/Beamlines/FlaggedElmPtr.h
 mode change 100755 => 100644 src/Classic/Beamlines/SimpleBeamline.cpp
 mode change 100755 => 100644 src/Classic/Beamlines/SimpleBeamline.h
 mode change 100755 => 100644 src/Classic/Beamlines/TBeamline.h
 mode change 100755 => 100644 src/Classic/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Channels/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Channels/Channel.cpp
 mode change 100755 => 100644 src/Classic/Channels/Channel.h
 mode change 100755 => 100644 src/Classic/Channels/ConstChannel.cpp
 mode change 100755 => 100644 src/Classic/Channels/ConstChannel.h
 mode change 100755 => 100644 src/Classic/Channels/DirectChannel.h
 mode change 100755 => 100644 src/Classic/Channels/IndexedChannel.h
 mode change 100755 => 100644 src/Classic/Channels/IndirectChannel.h
 mode change 100755 => 100644 src/Classic/ComponentWrappers/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/ComponentWrappers/CorrectorWrapper.cpp
 mode change 100755 => 100644 src/Classic/ComponentWrappers/CorrectorWrapper.h
 mode change 100755 => 100644 src/Classic/ComponentWrappers/CyclotronWrapper.cpp
 mode change 100755 => 100644 src/Classic/ComponentWrappers/CyclotronWrapper.h
 mode change 100755 => 100644 src/Classic/ComponentWrappers/MultipoleWrapper.cpp
 mode change 100755 => 100644 src/Classic/ComponentWrappers/MultipoleWrapper.h
 mode change 100755 => 100644 src/Classic/ComponentWrappers/RBendWrapper.cpp
 mode change 100755 => 100644 src/Classic/ComponentWrappers/RBendWrapper.h
 mode change 100755 => 100644 src/Classic/ComponentWrappers/SBendWrapper.cpp
 mode change 100755 => 100644 src/Classic/ComponentWrappers/SBendWrapper.h
 mode change 100755 => 100644 src/Classic/Construction/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Construction/ElementFactory.cpp
 mode change 100755 => 100644 src/Classic/Construction/ElementFactory.h
 mode change 100755 => 100644 src/Classic/Construction/Factory.cpp
 mode change 100755 => 100644 src/Classic/Construction/Factory.h
 mode change 100755 => 100644 src/Classic/DipoleFieldTest.cpp
 mode change 100755 => 100644 src/Classic/Fields/AcceleratingField.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic_fast.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic_fast.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic_fast.h
 mode change 100755 => 100644 src/Classic/Fields/Astra1D_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/Astra1D_fast.h
 mode change 100755 => 100644 src/Classic/Fields/BDipoleField.cpp
 mode change 100755 => 100644 src/Classic/Fields/BDipoleField.h
 mode change 100755 => 100644 src/Classic/Fields/BMultipoleField.cpp
 mode change 100755 => 100644 src/Classic/Fields/BMultipoleField.h
 mode change 100755 => 100644 src/Classic/Fields/BSingleMultipoleField.h
 mode change 100755 => 100644 src/Classic/Fields/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Fields/ConstBField.cpp
 mode change 100755 => 100644 src/Classic/Fields/ConstBField.h
 mode change 100755 => 100644 src/Classic/Fields/ConstBzField.cpp
 mode change 100755 => 100644 src/Classic/Fields/ConstBzField.h
 mode change 100755 => 100644 src/Classic/Fields/ConstEField.cpp
 mode change 100755 => 100644 src/Classic/Fields/ConstEField.h
 mode change 100755 => 100644 src/Classic/Fields/ConstEzField.cpp
 mode change 100755 => 100644 src/Classic/Fields/ConstEzField.h
 mode change 100755 => 100644 src/Classic/Fields/EDipoleField.cpp
 mode change 100755 => 100644 src/Classic/Fields/EDipoleField.h
 mode change 100755 => 100644 src/Classic/Fields/EMField.cpp
 mode change 100755 => 100644 src/Classic/Fields/EMField.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic_fast.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic_fast.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic_fast.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic_fast.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DProfile1.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DProfile1.h
 mode change 100755 => 100644 src/Classic/Fields/FM1DProfile2.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM1DProfile2.h
 mode change 100755 => 100644 src/Classic/Fields/FM2DDynamic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM2DDynamic.h
 mode change 100755 => 100644 src/Classic/Fields/FM2DElectroStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM2DElectroStatic.h
 mode change 100755 => 100644 src/Classic/Fields/FM2DMagnetoStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM2DMagnetoStatic.h
 mode change 100755 => 100644 src/Classic/Fields/FM3DDynamic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM3DDynamic.h
 mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block.h
 mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block_nonscale.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block_nonscale.h
 mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStatic.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStatic.h
 mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticExtended.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticExtended.h
 mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticH5Block.cpp
 mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticH5Block.h
 mode change 100755 => 100644 src/Classic/Fields/FMDummy.cpp
 mode change 100755 => 100644 src/Classic/Fields/FMDummy.h
 mode change 100755 => 100644 src/Classic/Fields/Fieldmap.cpp
 mode change 100755 => 100644 src/Classic/Fields/Fieldmap.h
 mode change 100755 => 100644 src/Classic/Fields/Fieldmap.hpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/MMatrix.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/MMatrix.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/MVector.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/MVector.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Mesh-inl.icc
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Mesh.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/Mesh.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/NDGrid.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/NDGrid.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/PPSolveFactory.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/PPSolveFactory.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialCoefficient.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialCoefficient.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialPatch.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialPatch.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/SolveFactory.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/SolveFactory.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/SquarePolynomialVector.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/SquarePolynomialVector.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/ThreeDGrid.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/ThreeDGrid.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/TriLinearInterpolator.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/TriLinearInterpolator.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/TwoDGrid.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/TwoDGrid.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/VectorMap.cpp
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/VectorMap.h
 mode change 100755 => 100644 src/Classic/Fields/Interpolation/polynomial_solve_with_smoothing.tex
 mode change 100755 => 100644 src/Classic/Fields/NullField.cpp
 mode change 100755 => 100644 src/Classic/Fields/NullField.h
 mode change 100755 => 100644 src/Classic/Fields/OscillatingField.h
 mode change 100755 => 100644 src/Classic/Fields/SectorField.cpp
 mode change 100755 => 100644 src/Classic/Fields/SectorField.h
 mode change 100755 => 100644 src/Classic/Fields/SectorMagneticFieldMap.cpp
 mode change 100755 => 100644 src/Classic/Fields/SectorMagneticFieldMap.h
 mode change 100755 => 100644 src/Classic/Fields/StaticElectricField.cpp
 mode change 100755 => 100644 src/Classic/Fields/StaticElectricField.h
 mode change 100755 => 100644 src/Classic/Fields/StaticMagneticField.cpp
 mode change 100755 => 100644 src/Classic/Fields/StaticMagneticField.h
 mode change 100755 => 100644 src/Classic/Filters/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Filters/Filter.h
 mode change 100755 => 100644 src/Classic/Filters/Filters.h
 mode change 100755 => 100644 src/Classic/Filters/FixedFFTLowPass.cpp
 mode change 100755 => 100644 src/Classic/Filters/FixedFFTLowPass.h
 mode change 100755 => 100644 src/Classic/Filters/RelativeFFTLowPass.cpp
 mode change 100755 => 100644 src/Classic/Filters/RelativeFFTLowPass.h
 mode change 100755 => 100644 src/Classic/Filters/SavitzkyGolay.cpp
 mode change 100755 => 100644 src/Classic/Filters/SavitzkyGolay.h
 mode change 100755 => 100644 src/Classic/Filters/Stencil.cpp
 mode change 100755 => 100644 src/Classic/Filters/Stencil.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/FixedAlgebra/DragtFinnMap.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/DragtFinnMap.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/DragtFinnNormalForm.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FArray1D.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FArray2D.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FComplexEigen.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FDoubleEigen.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FDynamicFP.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FLUMatrix.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FLieGenerator.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FLieGenerator.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FMatrix.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FMonomial.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FNormalForm.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FSlice.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FStaticFP.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FTps.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FTps.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FTpsData.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FTpsMath.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FVector.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FVps.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/FVps.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearFun.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearFun.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearMap.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearMap.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearMath.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/Taylor.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/Taylor.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportFun.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportFun.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportMap.cpp
 mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportMap.h
 mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportMath.h
 mode change 100755 => 100644 src/Classic/Main.cpp
 mode change 100755 => 100644 src/Classic/MemoryManagement/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/MemoryManagement/OwnPtr.h
 mode change 100755 => 100644 src/Classic/MemoryManagement/Pointer.h
 mode change 100755 => 100644 src/Classic/MemoryManagement/RCObject.h
 mode change 100755 => 100644 src/Classic/Parser/AbsFileStream.cpp
 mode change 100755 => 100644 src/Classic/Parser/AbsFileStream.h
 mode change 100755 => 100644 src/Classic/Parser/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Parser/FileStream.cpp
 mode change 100755 => 100644 src/Classic/Parser/FileStream.h
 mode change 100755 => 100644 src/Classic/Parser/Parser.h
 mode change 100755 => 100644 src/Classic/Parser/SimpleStatement.cpp
 mode change 100755 => 100644 src/Classic/Parser/SimpleStatement.h
 mode change 100755 => 100644 src/Classic/Parser/Statement.cpp
 mode change 100755 => 100644 src/Classic/Parser/Statement.h
 mode change 100755 => 100644 src/Classic/Parser/StringStream.cpp
 mode change 100755 => 100644 src/Classic/Parser/StringStream.h
 mode change 100755 => 100644 src/Classic/Parser/TerminalStream.cpp
 mode change 100755 => 100644 src/Classic/Parser/TerminalStream.h
 mode change 100755 => 100644 src/Classic/Parser/Token.cpp
 mode change 100755 => 100644 src/Classic/Parser/Token.h
 mode change 100755 => 100644 src/Classic/Parser/TokenStream.cpp
 mode change 100755 => 100644 src/Classic/Parser/TokenStream.h
 mode change 100755 => 100644 src/Classic/Physics/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Physics/Physics.h
 mode change 100755 => 100644 src/Classic/ReadMe
 mode change 100755 => 100644 src/Classic/Solvers/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Solvers/CSRIGFWakeFunction.cpp
 mode change 100755 => 100644 src/Classic/Solvers/CSRIGFWakeFunction.hh
 mode change 100755 => 100644 src/Classic/Solvers/CSRWakeFunction.cpp
 mode change 100755 => 100644 src/Classic/Solvers/CSRWakeFunction.hh
 mode change 100755 => 100644 src/Classic/Solvers/CollimatorPhysics.cpp
 mode change 100755 => 100644 src/Classic/Solvers/CollimatorPhysics.hh
 mode change 100755 => 100644 src/Classic/Solvers/GreenWakeFunction.cpp
 mode change 100755 => 100644 src/Classic/Solvers/GreenWakeFunction.hh
 mode change 100755 => 100644 src/Classic/Solvers/ParticleMatterInteractionHandler.hh
 mode change 100755 => 100644 src/Classic/Solvers/TestLambda.h
 mode change 100755 => 100644 src/Classic/Solvers/WakeFunction.hh
 mode change 100755 => 100644 src/Classic/Structure/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Structure/LossDataSink.cpp
 mode change 100755 => 100644 src/Classic/Structure/LossDataSink.h
 mode change 100755 => 100644 src/Classic/Structure/MeshGenerator.cpp
 mode change 100755 => 100644 src/Classic/Structure/MeshGenerator.h
 mode change 100755 => 100644 src/Classic/Structure/PeakFinder.cpp
 mode change 100755 => 100644 src/Classic/Structure/PeakFinder.h
 mode change 100755 => 100644 src/Classic/Utilities/ArithmeticError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ArithmeticError.h
 mode change 100755 => 100644 src/Classic/Utilities/AttributeError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/AttributeError.h
 mode change 100755 => 100644 src/Classic/Utilities/CLRangeError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/CLRangeError.h
 mode change 100755 => 100644 src/Classic/Utilities/CMakeLists.txt
 mode change 100755 => 100644 src/Classic/Utilities/ClassicException.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ClassicException.h
 mode change 100755 => 100644 src/Classic/Utilities/ClassicField.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ClassicField.h
 mode change 100755 => 100644 src/Classic/Utilities/ClassicRandom.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ClassicRandom.h
 mode change 100755 => 100644 src/Classic/Utilities/ComplexErrorFun.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ComplexErrorFun.h
 mode change 100755 => 100644 src/Classic/Utilities/ConvergenceError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ConvergenceError.h
 mode change 100755 => 100644 src/Classic/Utilities/DivideError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/DivideError.h
 mode change 100755 => 100644 src/Classic/Utilities/DomainError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/DomainError.h
 mode change 100755 => 100644 src/Classic/Utilities/EigenvalueError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/EigenvalueError.h
 mode change 100755 => 100644 src/Classic/Utilities/FormatError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/FormatError.h
 mode change 100755 => 100644 src/Classic/Utilities/Gauss.cpp
 mode change 100755 => 100644 src/Classic/Utilities/Gauss.h
 mode change 100755 => 100644 src/Classic/Utilities/GeneralClassicException.cpp
 mode change 100755 => 100644 src/Classic/Utilities/GeneralClassicException.h
 mode change 100755 => 100644 src/Classic/Utilities/InverseGauss.cpp
 mode change 100755 => 100644 src/Classic/Utilities/InverseGauss.h
 mode change 100755 => 100644 src/Classic/Utilities/LogicalError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/LogicalError.h
 mode change 100755 => 100644 src/Classic/Utilities/NormalFormError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/NormalFormError.h
 mode change 100755 => 100644 src/Classic/Utilities/OptionTypes.h
 mode change 100755 => 100644 src/Classic/Utilities/Options.cpp
 mode change 100755 => 100644 src/Classic/Utilities/Options.h
 mode change 100755 => 100644 src/Classic/Utilities/OverflowError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/OverflowError.h
 mode change 100755 => 100644 src/Classic/Utilities/ParseError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/ParseError.h
 mode change 100755 => 100644 src/Classic/Utilities/RingSection.cpp
 mode change 100755 => 100644 src/Classic/Utilities/RingSection.h
 mode change 100755 => 100644 src/Classic/Utilities/SingularMatrixError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/SingularMatrixError.h
 mode change 100755 => 100644 src/Classic/Utilities/SizeError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/SizeError.h
 mode change 100755 => 100644 src/Classic/Utilities/SwitcherError.cpp
 mode change 100755 => 100644 src/Classic/Utilities/SwitcherError.h
 mode change 100755 => 100644 src/Classic/Utilities/Util.cpp
 mode change 100755 => 100644 src/Classic/Utilities/Util.h
 mode change 100755 => 100644 src/Classic/autogen-gele.sh
 mode change 100755 => 100644 src/Classic/autogen-palu.sh
 mode change 100755 => 100644 src/Classic/autogen-regression.sh
 mode change 100755 => 100644 src/Classic/autogen.sh
 mode change 100755 => 100644 src/Classic/configure.ac
 mode change 100755 => 100644 src/Copyright.readme
 mode change 100755 => 100644 src/Distribution/CMakeLists.txt
 mode change 100755 => 100644 src/Distribution/ClosedOrbitFinder.h
 mode change 100755 => 100644 src/Distribution/Distribution.cpp
 mode change 100755 => 100644 src/Distribution/Distribution.h
 mode change 100755 => 100644 src/Distribution/Harmonics.h
 mode change 100755 => 100644 src/Distribution/LaserProfile.cpp
 mode change 100755 => 100644 src/Distribution/LaserProfile.h
 mode change 100755 => 100644 src/Distribution/MagneticField.cpp
 mode change 100755 => 100644 src/Distribution/MagneticField.h
 mode change 100755 => 100644 src/Distribution/MapGenerator.h
 mode change 100755 => 100644 src/Distribution/SigmaGenerator.h
 mode change 100755 => 100644 src/Distribution/halton1d_sequence.cpp
 mode change 100755 => 100644 src/Distribution/halton1d_sequence.hh
 mode change 100755 => 100644 src/Distribution/matrix_vector_operation.h
 mode change 100755 => 100644 src/Distribution/rdm.h
 mode change 100755 => 100644 src/Editor/CMakeLists.txt
 mode change 100755 => 100644 src/Editor/Edit.cpp
 mode change 100755 => 100644 src/Editor/Edit.h
 mode change 100755 => 100644 src/Editor/EditCmd.cpp
 mode change 100755 => 100644 src/Editor/EditCmd.h
 mode change 100755 => 100644 src/Editor/EditCycle.cpp
 mode change 100755 => 100644 src/Editor/EditCycle.h
 mode change 100755 => 100644 src/Editor/EditEnd.cpp
 mode change 100755 => 100644 src/Editor/EditEnd.h
 mode change 100755 => 100644 src/Editor/EditFlatten.cpp
 mode change 100755 => 100644 src/Editor/EditFlatten.h
 mode change 100755 => 100644 src/Editor/EditInstall.cpp
 mode change 100755 => 100644 src/Editor/EditInstall.h
 mode change 100755 => 100644 src/Editor/EditMove.cpp
 mode change 100755 => 100644 src/Editor/EditMove.h
 mode change 100755 => 100644 src/Editor/EditParser.cpp
 mode change 100755 => 100644 src/Editor/EditParser.h
 mode change 100755 => 100644 src/Editor/EditReflect.cpp
 mode change 100755 => 100644 src/Editor/EditReflect.h
 mode change 100755 => 100644 src/Editor/EditRemove.cpp
 mode change 100755 => 100644 src/Editor/EditRemove.h
 mode change 100755 => 100644 src/Editor/EditReplace.cpp
 mode change 100755 => 100644 src/Editor/EditReplace.h
 mode change 100755 => 100644 src/Editor/EditSelect.cpp
 mode change 100755 => 100644 src/Editor/EditSelect.h
 mode change 100755 => 100644 src/Elements/AttCell.cpp
 mode change 100755 => 100644 src/Elements/AttCell.h
 mode change 100755 => 100644 src/Elements/CMakeLists.txt
 mode change 100755 => 100644 src/Elements/OpalBeamBeam.cpp
 mode change 100755 => 100644 src/Elements/OpalBeamBeam.h
 mode change 100755 => 100644 src/Elements/OpalBeamBeam3D.cpp
 mode change 100755 => 100644 src/Elements/OpalBeamBeam3D.h
 mode change 100755 => 100644 src/Elements/OpalBeamline.cpp
 mode change 100755 => 100644 src/Elements/OpalBeamline.h
 mode change 100755 => 100644 src/Elements/OpalBend.cpp
 mode change 100755 => 100644 src/Elements/OpalBend.h
 mode change 100755 => 100644 src/Elements/OpalCCollimator.cpp
 mode change 100755 => 100644 src/Elements/OpalCCollimator.h
 mode change 100755 => 100644 src/Elements/OpalCavity.cpp
 mode change 100755 => 100644 src/Elements/OpalCavity.h
 mode change 100755 => 100644 src/Elements/OpalCyclotron.cpp
 mode change 100755 => 100644 src/Elements/OpalCyclotron.h
 mode change 100755 => 100644 src/Elements/OpalCyclotronValley.cpp
 mode change 100755 => 100644 src/Elements/OpalCyclotronValley.h
 mode change 100755 => 100644 src/Elements/OpalDegrader.cpp
 mode change 100755 => 100644 src/Elements/OpalDegrader.h
 mode change 100755 => 100644 src/Elements/OpalDrift.cpp
 mode change 100755 => 100644 src/Elements/OpalDrift.h
 mode change 100755 => 100644 src/Elements/OpalECollimator.cpp
 mode change 100755 => 100644 src/Elements/OpalECollimator.h
 mode change 100755 => 100644 src/Elements/OpalElement.cpp
 mode change 100755 => 100644 src/Elements/OpalElement.h
 mode change 100755 => 100644 src/Elements/OpalHKicker.cpp
 mode change 100755 => 100644 src/Elements/OpalHKicker.h
 mode change 100755 => 100644 src/Elements/OpalHMonitor.cpp
 mode change 100755 => 100644 src/Elements/OpalHMonitor.h
 mode change 100755 => 100644 src/Elements/OpalInstrument.cpp
 mode change 100755 => 100644 src/Elements/OpalInstrument.h
 mode change 100755 => 100644 src/Elements/OpalKicker.cpp
 mode change 100755 => 100644 src/Elements/OpalKicker.h
 mode change 100755 => 100644 src/Elements/OpalMarker.cpp
 mode change 100755 => 100644 src/Elements/OpalMarker.h
 mode change 100755 => 100644 src/Elements/OpalMonitor.cpp
 mode change 100755 => 100644 src/Elements/OpalMonitor.h
 mode change 100755 => 100644 src/Elements/OpalMultipole.cpp
 mode change 100755 => 100644 src/Elements/OpalMultipole.h
 mode change 100755 => 100644 src/Elements/OpalMultipoleT.cpp
 mode change 100755 => 100644 src/Elements/OpalMultipoleT.h
 mode change 100755 => 100644 src/Elements/OpalOctupole.cpp
 mode change 100755 => 100644 src/Elements/OpalOctupole.h
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCartesianOffset.cpp
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCartesianOffset.h
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCylindricalOffset.cpp
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCylindricalOffset.h
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCartesianOffset.cpp
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCartesianOffset.h
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCylindricalOffset.cpp
 mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCylindricalOffset.h
 mode change 100755 => 100644 src/Elements/OpalParallelPlate.cpp
 mode change 100755 => 100644 src/Elements/OpalParallelPlate.h
 mode change 100755 => 100644 src/Elements/OpalPatch.cpp
 mode change 100755 => 100644 src/Elements/OpalPatch.h
 mode change 100755 => 100644 src/Elements/OpalPepperPot.cpp
 mode change 100755 => 100644 src/Elements/OpalPepperPot.h
 mode change 100755 => 100644 src/Elements/OpalPolynomialTimeDependence.cpp
 mode change 100755 => 100644 src/Elements/OpalPolynomialTimeDependence.h
 mode change 100755 => 100644 src/Elements/OpalProbe.cpp
 mode change 100755 => 100644 src/Elements/OpalProbe.h
 mode change 100755 => 100644 src/Elements/OpalQuadrupole.cpp
 mode change 100755 => 100644 src/Elements/OpalQuadrupole.h
 mode change 100755 => 100644 src/Elements/OpalRBend.cpp
 mode change 100755 => 100644 src/Elements/OpalRBend.h
 mode change 100755 => 100644 src/Elements/OpalRBend3D.cpp
 mode change 100755 => 100644 src/Elements/OpalRBend3D.h
 mode change 100755 => 100644 src/Elements/OpalRCollimator.cpp
 mode change 100755 => 100644 src/Elements/OpalRCollimator.h
 mode change 100755 => 100644 src/Elements/OpalRingDefinition.cpp
 mode change 100755 => 100644 src/Elements/OpalRingDefinition.h
 mode change 100755 => 100644 src/Elements/OpalSBend.cpp
 mode change 100755 => 100644 src/Elements/OpalSBend.h
 mode change 100755 => 100644 src/Elements/OpalSBend3D.cpp
 mode change 100755 => 100644 src/Elements/OpalSBend3D.h
 mode change 100755 => 100644 src/Elements/OpalSRot.cpp
 mode change 100755 => 100644 src/Elements/OpalSRot.h
 mode change 100755 => 100644 src/Elements/OpalScalingFFAGMagnet.cpp
 mode change 100755 => 100644 src/Elements/OpalScalingFFAGMagnet.h
 mode change 100755 => 100644 src/Elements/OpalSeparator.cpp
 mode change 100755 => 100644 src/Elements/OpalSeparator.h
 mode change 100755 => 100644 src/Elements/OpalSeptum.cpp
 mode change 100755 => 100644 src/Elements/OpalSeptum.h
 mode change 100755 => 100644 src/Elements/OpalSextupole.cpp
 mode change 100755 => 100644 src/Elements/OpalSextupole.h
 mode change 100755 => 100644 src/Elements/OpalSlit.cpp
 mode change 100755 => 100644 src/Elements/OpalSlit.h
 mode change 100755 => 100644 src/Elements/OpalSolenoid.cpp
 mode change 100755 => 100644 src/Elements/OpalSolenoid.h
 mode change 100755 => 100644 src/Elements/OpalSource.cpp
 mode change 100755 => 100644 src/Elements/OpalSource.h
 mode change 100755 => 100644 src/Elements/OpalStripper.cpp
 mode change 100755 => 100644 src/Elements/OpalStripper.h
 mode change 100755 => 100644 src/Elements/OpalTravelingWave.cpp
 mode change 100755 => 100644 src/Elements/OpalTravelingWave.h
 mode change 100755 => 100644 src/Elements/OpalVKicker.cpp
 mode change 100755 => 100644 src/Elements/OpalVKicker.h
 mode change 100755 => 100644 src/Elements/OpalVMonitor.cpp
 mode change 100755 => 100644 src/Elements/OpalVMonitor.h
 mode change 100755 => 100644 src/Elements/OpalVariableRFCavity.cpp
 mode change 100755 => 100644 src/Elements/OpalVariableRFCavity.h
 mode change 100755 => 100644 src/Elements/OpalWire.cpp
 mode change 100755 => 100644 src/Elements/OpalWire.h
 mode change 100755 => 100644 src/Elements/OpalYRot.cpp
 mode change 100755 => 100644 src/Elements/OpalYRot.h
 mode change 100755 => 100644 src/Errors/AlignBase.cpp
 mode change 100755 => 100644 src/Errors/AlignBase.h
 mode change 100755 => 100644 src/Errors/AlignHandler.cpp
 mode change 100755 => 100644 src/Errors/AlignHandler.h
 mode change 100755 => 100644 src/Errors/AlignReader.cpp
 mode change 100755 => 100644 src/Errors/AlignReader.h
 mode change 100755 => 100644 src/Errors/AlignRemover.cpp
 mode change 100755 => 100644 src/Errors/AlignRemover.h
 mode change 100755 => 100644 src/Errors/AlignWriter.cpp
 mode change 100755 => 100644 src/Errors/AlignWriter.h
 mode change 100755 => 100644 src/Errors/CMakeLists.txt
 mode change 100755 => 100644 src/Errors/Error.cpp
 mode change 100755 => 100644 src/Errors/Error.h
 mode change 100755 => 100644 src/Errors/ErrorAlign.cpp
 mode change 100755 => 100644 src/Errors/ErrorAlign.h
 mode change 100755 => 100644 src/Errors/ErrorCmd.cpp
 mode change 100755 => 100644 src/Errors/ErrorCmd.h
 mode change 100755 => 100644 src/Errors/ErrorComp.cpp
 mode change 100755 => 100644 src/Errors/ErrorComp.h
 mode change 100755 => 100644 src/Errors/ErrorEnd.cpp
 mode change 100755 => 100644 src/Errors/ErrorEnd.h
 mode change 100755 => 100644 src/Errors/ErrorField.cpp
 mode change 100755 => 100644 src/Errors/ErrorField.h
 mode change 100755 => 100644 src/Errors/ErrorParser.cpp
 mode change 100755 => 100644 src/Errors/ErrorParser.h
 mode change 100755 => 100644 src/Errors/ErrorPrint.cpp
 mode change 100755 => 100644 src/Errors/ErrorPrint.h
 mode change 100755 => 100644 src/Errors/ErrorSave.cpp
 mode change 100755 => 100644 src/Errors/ErrorSave.h
 mode change 100755 => 100644 src/Errors/ErrorSelect.cpp
 mode change 100755 => 100644 src/Errors/ErrorSelect.h
 mode change 100755 => 100644 src/Errors/MPBase.cpp
 mode change 100755 => 100644 src/Errors/MPBase.h
 mode change 100755 => 100644 src/Errors/MPHandler.cpp
 mode change 100755 => 100644 src/Errors/MPHandler.h
 mode change 100755 => 100644 src/Errors/MPReader.cpp
 mode change 100755 => 100644 src/Errors/MPReader.h
 mode change 100755 => 100644 src/Errors/MPRemover.cpp
 mode change 100755 => 100644 src/Errors/MPRemover.h
 mode change 100755 => 100644 src/Errors/MPWriter.cpp
 mode change 100755 => 100644 src/Errors/MPWriter.h
 mode change 100755 => 100644 src/Expressions/AAutomatic.h
 mode change 100755 => 100644 src/Expressions/ABinary.h
 mode change 100755 => 100644 src/Expressions/AColumn.cpp
 mode change 100755 => 100644 src/Expressions/AColumn.h
 mode change 100755 => 100644 src/Expressions/ADeferred.h
 mode change 100755 => 100644 src/Expressions/AList.h
 mode change 100755 => 100644 src/Expressions/ARefAttr.h
 mode change 100755 => 100644 src/Expressions/ARefExpr.h
 mode change 100755 => 100644 src/Expressions/ARow.cpp
 mode change 100755 => 100644 src/Expressions/ARow.h
 mode change 100755 => 100644 src/Expressions/ASUnary.h
 mode change 100755 => 100644 src/Expressions/ATable.cpp
 mode change 100755 => 100644 src/Expressions/ATable.h
 mode change 100755 => 100644 src/Expressions/AUnary.h
 mode change 100755 => 100644 src/Expressions/AValue.h
 mode change 100755 => 100644 src/Expressions/CMakeLists.txt
 mode change 100755 => 100644 src/Expressions/Expressions.cpp
 mode change 100755 => 100644 src/Expressions/Expressions.h
 mode change 100755 => 100644 src/Expressions/Indexer.h
 mode change 100755 => 100644 src/Expressions/SAutomatic.h
 mode change 100755 => 100644 src/Expressions/SBinary.h
 mode change 100755 => 100644 src/Expressions/SCell.cpp
 mode change 100755 => 100644 src/Expressions/SCell.h
 mode change 100755 => 100644 src/Expressions/SConstant.h
 mode change 100755 => 100644 src/Expressions/SDeferred.h
 mode change 100755 => 100644 src/Expressions/SFunction.cpp
 mode change 100755 => 100644 src/Expressions/SFunction.h
 mode change 100755 => 100644 src/Expressions/SHash.cpp
 mode change 100755 => 100644 src/Expressions/SHash.h
 mode change 100755 => 100644 src/Expressions/SNull.h
 mode change 100755 => 100644 src/Expressions/SRefAttr.h
 mode change 100755 => 100644 src/Expressions/SRefExpr.h
 mode change 100755 => 100644 src/Expressions/SUnary.h
 mode change 100755 => 100644 src/Expressions/SValue.h
 mode change 100755 => 100644 src/Expressions/TFind.h
 mode change 100755 => 100644 src/Expressions/TFunction0.h
 mode change 100755 => 100644 src/Expressions/TFunction1.h
 mode change 100755 => 100644 src/Expressions/TFunction2.h
 mode change 100755 => 100644 src/Lines/CMakeLists.txt
 mode change 100755 => 100644 src/Lines/FlatWriter.cpp
 mode change 100755 => 100644 src/Lines/FlatWriter.h
 mode change 100755 => 100644 src/Lines/Line.cpp
 mode change 100755 => 100644 src/Lines/Line.h
 mode change 100755 => 100644 src/Lines/LineTemplate.cpp
 mode change 100755 => 100644 src/Lines/LineTemplate.h
 mode change 100755 => 100644 src/Lines/Replacer.cpp
 mode change 100755 => 100644 src/Lines/Replacer.h
 mode change 100755 => 100644 src/Lines/Sequence.cpp
 mode change 100755 => 100644 src/Lines/Sequence.h
 mode change 100755 => 100644 src/Lines/SequenceMember.cpp
 mode change 100755 => 100644 src/Lines/SequenceMember.h
 mode change 100755 => 100644 src/Lines/SequenceParser.cpp
 mode change 100755 => 100644 src/Lines/SequenceParser.h
 mode change 100755 => 100644 src/Lines/SequenceTemplate.cpp
 mode change 100755 => 100644 src/Lines/SequenceTemplate.h
 mode change 100755 => 100644 src/Main.cpp
 mode change 100755 => 100644 src/Match/AbstractFun.cpp
 mode change 100755 => 100644 src/Match/AbstractFun.h
 mode change 100755 => 100644 src/Match/AbstractVar.cpp
 mode change 100755 => 100644 src/Match/AbstractVar.h
 mode change 100755 => 100644 src/Match/CMakeLists.txt
 mode change 100755 => 100644 src/Match/ConcreteFun.cpp
 mode change 100755 => 100644 src/Match/ConcreteFun.h
 mode change 100755 => 100644 src/Match/ConcreteVar.cpp
 mode change 100755 => 100644 src/Match/ConcreteVar.h
 mode change 100755 => 100644 src/Match/ConstraintCmd.cpp
 mode change 100755 => 100644 src/Match/ConstraintCmd.h
 mode change 100755 => 100644 src/Match/LMDif.cpp
 mode change 100755 => 100644 src/Match/LMDif.h
 mode change 100755 => 100644 src/Match/Match.cpp
 mode change 100755 => 100644 src/Match/Match.h
 mode change 100755 => 100644 src/Match/MatchCmd.cpp
 mode change 100755 => 100644 src/Match/MatchCmd.h
 mode change 100755 => 100644 src/Match/MatchEnd.cpp
 mode change 100755 => 100644 src/Match/MatchEnd.h
 mode change 100755 => 100644 src/Match/MatchLimits.h
 mode change 100755 => 100644 src/Match/MatchOption.cpp
 mode change 100755 => 100644 src/Match/MatchOption.h
 mode change 100755 => 100644 src/Match/MatchParser.cpp
 mode change 100755 => 100644 src/Match/MatchParser.h
 mode change 100755 => 100644 src/Match/MatchState.h
 mode change 100755 => 100644 src/Match/Migrad.cpp
 mode change 100755 => 100644 src/Match/Migrad.h
 mode change 100755 => 100644 src/Match/Simplex.cpp
 mode change 100755 => 100644 src/Match/Simplex.h
 mode change 100755 => 100644 src/Match/VaryCmd.cpp
 mode change 100755 => 100644 src/Match/VaryCmd.h
 mode change 100755 => 100644 src/OpalConfigure/CMakeLists.txt
 mode change 100755 => 100644 src/OpalConfigure/Configure.cpp
 mode change 100755 => 100644 src/OpalConfigure/Configure.h
 mode change 100755 => 100644 src/OpalParser/CMakeLists.txt
 mode change 100755 => 100644 src/OpalParser/CompoundStatement.cpp
 mode change 100755 => 100644 src/OpalParser/CompoundStatement.h
 mode change 100755 => 100644 src/OpalParser/IfStatement.cpp
 mode change 100755 => 100644 src/OpalParser/IfStatement.h
 mode change 100755 => 100644 src/OpalParser/Macro.cpp
 mode change 100755 => 100644 src/OpalParser/Macro.h
 mode change 100755 => 100644 src/OpalParser/MacroCmd.cpp
 mode change 100755 => 100644 src/OpalParser/MacroCmd.h
 mode change 100755 => 100644 src/OpalParser/MacroStream.cpp
 mode change 100755 => 100644 src/OpalParser/MacroStream.h
 mode change 100755 => 100644 src/OpalParser/OpalParser.cpp
 mode change 100755 => 100644 src/OpalParser/OpalParser.h
 mode change 100755 => 100644 src/OpalParser/WhileStatement.cpp
 mode change 100755 => 100644 src/OpalParser/WhileStatement.h
 mode change 100755 => 100644 src/Optimize/CMakeLists.txt
 mode change 100755 => 100644 src/Optimize/Constraint.cpp
 mode change 100755 => 100644 src/Optimize/Constraint.h
 mode change 100755 => 100644 src/Optimize/DVar.cpp
 mode change 100755 => 100644 src/Optimize/DVar.h
 mode change 100755 => 100644 src/Optimize/Objective.cpp
 mode change 100755 => 100644 src/Optimize/Objective.h
 mode change 100755 => 100644 src/Optimize/OpalSimulation.cpp
 mode change 100755 => 100644 src/Optimize/OpalSimulation.h
 mode change 100755 => 100644 src/Optimize/OptimizeCmd.cpp
 mode change 100755 => 100644 src/Optimize/OptimizeCmd.h
 mode change 100755 => 100644 src/PhysicsActions/CMakeLists.txt
 mode change 100755 => 100644 src/PhysicsActions/Dynamic.cpp
 mode change 100755 => 100644 src/PhysicsActions/Dynamic.h
 mode change 100755 => 100644 src/PhysicsActions/MakeSequence.cpp
 mode change 100755 => 100644 src/PhysicsActions/MakeSequence.h
 mode change 100755 => 100644 src/PhysicsActions/SetIntegrator.cpp
 mode change 100755 => 100644 src/PhysicsActions/SetIntegrator.h
 mode change 100755 => 100644 src/PhysicsActions/Static.cpp
 mode change 100755 => 100644 src/PhysicsActions/Static.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/Amesos2BottomSolver.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/Amesos2BottomSolver.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrBoundary.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrDirichletBoundary.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrInterpolater.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrLagrangeInterpolater.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrLagrangeInterpolater.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGrid.cpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGrid.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridCore.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridDefs.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridLevel.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridLevel.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrOpenBoundary.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPCInterpolater.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPCInterpolater.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPeriodicBoundary.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPreconditioner.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrSmoother.cpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrSmoother.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrTrilinearInterpolater.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/AmrTrilinearInterpolater.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/BelosBottomSolver.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/BelosBottomSolver.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/BottomSolver.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/CMakeLists.txt
 mode change 100755 => 100644 src/Solvers/AMR_MG/Ifpack2Preconditioner.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuBottomSolver.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuBottomSolver.hpp
 mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuPreconditioner.h
 mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuPreconditioner.hpp
 mode change 100755 => 100644 src/Solvers/AmrPoissonSolver.h
 mode change 100755 => 100644 src/Solvers/ArbitraryDomain.cpp
 mode change 100755 => 100644 src/Solvers/ArbitraryDomain.h
 mode change 100755 => 100644 src/Solvers/BoxCornerDomain.cpp
 mode change 100755 => 100644 src/Solvers/BoxCornerDomain.h
 mode change 100755 => 100644 src/Solvers/BoxLibSolvers/FMGPoissonSolver.cpp
 mode change 100755 => 100644 src/Solvers/BoxLibSolvers/FMGPoissonSolver.h
 mode change 100755 => 100644 src/Solvers/CMakeLists.txt
 mode change 100755 => 100644 src/Solvers/EllipticDomain.cpp
 mode change 100755 => 100644 src/Solvers/EllipticDomain.h
 mode change 100755 => 100644 src/Solvers/FFTBoxPoissonSolver.cpp
 mode change 100755 => 100644 src/Solvers/FFTBoxPoissonSolver.h
 mode change 100755 => 100644 src/Solvers/FFTPoissonSolver.cpp
 mode change 100755 => 100644 src/Solvers/FFTPoissonSolver.h
 mode change 100755 => 100644 src/Solvers/IrregularDomain.h
 mode change 100755 => 100644 src/Solvers/MGPoissonSolver.cpp
 mode change 100755 => 100644 src/Solvers/MGPoissonSolver.h
 mode change 100755 => 100644 src/Solvers/P3MPoissonSolver.cpp
 mode change 100755 => 100644 src/Solvers/P3MPoissonSolver.h
 mode change 100755 => 100644 src/Solvers/PoissonSolver.h
 mode change 100755 => 100644 src/Solvers/RectangularDomain.cpp
 mode change 100755 => 100644 src/Solvers/RectangularDomain.h
 mode change 100755 => 100644 src/Solvers/TaperDomain.cpp
 mode change 100755 => 100644 src/Solvers/TaperDomain.h
 mode change 100755 => 100644 src/Steppers/BorisPusher.h
 mode change 100755 => 100644 src/Steppers/CMakeLists.txt
 mode change 100755 => 100644 src/Steppers/LF2.h
 mode change 100755 => 100644 src/Steppers/LF2.hpp
 mode change 100755 => 100644 src/Steppers/RK4.h
 mode change 100755 => 100644 src/Steppers/RK4.hpp
 mode change 100755 => 100644 src/Steppers/Stepper.h
 mode change 100755 => 100644 src/Steppers/Steppers.h
 mode change 100755 => 100644 src/Structure/Beam.cpp
 mode change 100755 => 100644 src/Structure/Beam.h
 mode change 100755 => 100644 src/Structure/BoundaryGeometry.cpp
 mode change 100755 => 100644 src/Structure/BoundaryGeometry.h
 mode change 100755 => 100644 src/Structure/CMakeLists.txt
 mode change 100755 => 100644 src/Structure/DataSink.cpp
 mode change 100755 => 100644 src/Structure/DataSink.h
 mode change 100755 => 100644 src/Structure/FieldSolver.cpp
 mode change 100755 => 100644 src/Structure/FieldSolver.h
 mode change 100755 => 100644 src/Structure/H5PartWrapper.cpp
 mode change 100755 => 100644 src/Structure/H5PartWrapper.h
 mode change 100755 => 100644 src/Structure/H5PartWrapperForPC.cpp
 mode change 100755 => 100644 src/Structure/H5PartWrapperForPC.h
 mode change 100755 => 100644 src/Structure/H5PartWrapperForPS.cpp
 mode change 100755 => 100644 src/Structure/H5PartWrapperForPS.h
 mode change 100755 => 100644 src/Structure/H5PartWrapperForPT.cpp
 mode change 100755 => 100644 src/Structure/H5PartWrapperForPT.h
 mode change 100755 => 100644 src/Structure/IpplInfoWrapper.cpp
 mode change 100755 => 100644 src/Structure/IpplInfoWrapper.h
 mode change 100755 => 100644 src/Structure/OpalInputInterpreter.cpp
 mode change 100755 => 100644 src/Structure/OpalInputInterpreter.h
 mode change 100755 => 100644 src/Structure/OpalWake.cpp
 mode change 100755 => 100644 src/Structure/OpalWake.h
 mode change 100755 => 100644 src/Structure/ParticleMatterInteraction.cpp
 mode change 100755 => 100644 src/Structure/ParticleMatterInteraction.h
 mode change 100755 => 100644 src/Structure/PriEmissionPhysics.cpp
 mode change 100755 => 100644 src/Structure/PriEmissionPhysics.h
 mode change 100755 => 100644 src/Structure/SecondaryEmissionPhysics.cpp
 mode change 100755 => 100644 src/Structure/SecondaryEmissionPhysics.h
 mode change 100755 => 100644 src/Structure/TracerParticles.cpp
 mode change 100755 => 100644 src/Structure/TracerParticles.hpp
 mode change 100755 => 100644 src/Tables/AttList.cpp
 mode change 100755 => 100644 src/Tables/AttList.h
 mode change 100755 => 100644 src/Tables/AttWriter.cpp
 mode change 100755 => 100644 src/Tables/AttWriter.h
 mode change 100755 => 100644 src/Tables/CMakeLists.txt
 mode change 100755 => 100644 src/Tables/CorrectionBase.cpp
 mode change 100755 => 100644 src/Tables/CorrectionBase.h
 mode change 100755 => 100644 src/Tables/Eigen.cpp
 mode change 100755 => 100644 src/Tables/Eigen.h
 mode change 100755 => 100644 src/Tables/Envelope.cpp
 mode change 100755 => 100644 src/Tables/Envelope.h
 mode change 100755 => 100644 src/Tables/Flatten.h
 mode change 100755 => 100644 src/Tables/Insertion.cpp
 mode change 100755 => 100644 src/Tables/Insertion.h
 mode change 100755 => 100644 src/Tables/List.cpp
 mode change 100755 => 100644 src/Tables/List.h
 mode change 100755 => 100644 src/Tables/MatrixCmd.cpp
 mode change 100755 => 100644 src/Tables/MatrixCmd.h
 mode change 100755 => 100644 src/Tables/Micado.cpp
 mode change 100755 => 100644 src/Tables/Micado.h
 mode change 100755 => 100644 src/Tables/Period.cpp
 mode change 100755 => 100644 src/Tables/Period.h
 mode change 100755 => 100644 src/Tables/RangeSelector.cpp
 mode change 100755 => 100644 src/Tables/RangeSelector.h
 mode change 100755 => 100644 src/Tables/Selector.cpp
 mode change 100755 => 100644 src/Tables/Selector.h
 mode change 100755 => 100644 src/Tables/Survey.cpp
 mode change 100755 => 100644 src/Tables/Survey.h
 mode change 100755 => 100644 src/Tables/TableTester.cpp
 mode change 100755 => 100644 src/Tables/TableTester.h
 mode change 100755 => 100644 src/Tables/ThreadAll.cpp
 mode change 100755 => 100644 src/Tables/ThreadAll.h
 mode change 100755 => 100644 src/Tables/ThreadBpm.cpp
 mode change 100755 => 100644 src/Tables/ThreadBpm.h
 mode change 100755 => 100644 src/Tables/Twiss.cpp
 mode change 100755 => 100644 src/Tables/Twiss.h
 mode change 100755 => 100644 src/Tables/Twiss3.cpp
 mode change 100755 => 100644 src/Tables/Twiss3.h
 mode change 100755 => 100644 src/Track/CMakeLists.txt
 mode change 100755 => 100644 src/Track/Track.cpp
 mode change 100755 => 100644 src/Track/Track.h
 mode change 100755 => 100644 src/Track/TrackCmd.cpp
 mode change 100755 => 100644 src/Track/TrackCmd.h
 mode change 100755 => 100644 src/Track/TrackEnd.cpp
 mode change 100755 => 100644 src/Track/TrackEnd.h
 mode change 100755 => 100644 src/Track/TrackParser.cpp
 mode change 100755 => 100644 src/Track/TrackParser.h
 mode change 100755 => 100644 src/Track/TrackRun.cpp
 mode change 100755 => 100644 src/Track/TrackRun.h
 mode change 100755 => 100644 src/Track/TrackSave.cpp
 mode change 100755 => 100644 src/Track/TrackSave.h
 mode change 100755 => 100644 src/Track/TrackStart.cpp
 mode change 100755 => 100644 src/Track/TrackStart.h
 mode change 100755 => 100644 src/Utilities/CMakeLists.txt
 mode change 100755 => 100644 src/Utilities/NumToStr.h
 mode change 100755 => 100644 src/Utilities/OpalException.cpp
 mode change 100755 => 100644 src/Utilities/OpalException.h
 mode change 100755 => 100644 src/Utilities/OpalFilter.cpp
 mode change 100755 => 100644 src/Utilities/OpalFilter.h
 mode change 100755 => 100644 src/Utilities/OpalSection.cpp
 mode change 100755 => 100644 src/Utilities/OpalSection.h
 mode change 100755 => 100644 src/Utilities/RegularExpression.cpp
 mode change 100755 => 100644 src/Utilities/RegularExpression.h
 mode change 100755 => 100644 src/Utilities/Round.cpp
 mode change 100755 => 100644 src/Utilities/Round.h
 mode change 100755 => 100644 src/Utilities/Timer.cpp
 mode change 100755 => 100644 src/Utilities/Timer.h
 mode change 100755 => 100644 src/Utilities/TpsWerrf.cpp
 mode change 100755 => 100644 src/Utilities/TpsWerrf.h
 mode change 100755 => 100644 src/Utilities/Truncate.cpp
 mode change 100755 => 100644 src/Utilities/Truncate.h
 mode change 100755 => 100644 src/ValueDefinitions/BoolConstant.cpp
 mode change 100755 => 100644 src/ValueDefinitions/BoolConstant.h
 mode change 100755 => 100644 src/ValueDefinitions/CMakeLists.txt
 mode change 100755 => 100644 src/ValueDefinitions/RealConstant.cpp
 mode change 100755 => 100644 src/ValueDefinitions/RealConstant.h
 mode change 100755 => 100644 src/ValueDefinitions/RealVariable.cpp
 mode change 100755 => 100644 src/ValueDefinitions/RealVariable.h
 mode change 100755 => 100644 src/ValueDefinitions/RealVector.cpp
 mode change 100755 => 100644 src/ValueDefinitions/RealVector.h
 mode change 100755 => 100644 src/ValueDefinitions/StringConstant.cpp
 mode change 100755 => 100644 src/ValueDefinitions/StringConstant.h
 mode change 100755 => 100644 src/addToDoxygenMainPage.h
 mode change 100755 => 100644 src/changes.cpp
 mode change 100755 => 100644 src/changes.h
 mode change 100755 => 100644 src/config.h.in
 mode change 100755 => 100644 src/opal.cpp
 mode change 100755 => 100644 src/opal.h
 mode change 100755 => 100644 src/revision.h.in
 mode change 100755 => 100644 tests/CMakeLists.txt
 mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1-RT.o
 mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1.in
 mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1.rt
 mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1.sge
 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.lbal
 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.lbal.md5
 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.out
 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.out.md5
 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.stat
 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.stat.md5
 mode change 100755 => 100644 tests/Kollimator/collimator.in
 mode change 100755 => 100644 tests/Main.cpp
 mode change 100755 => 100644 tests/PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/CMakeLists.txt
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/DipoleFieldTest.cpp
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/MultipoleTTest.cpp
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/OffsetTest.cpp
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/RingTest.cpp
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/SBend3DTest.cpp
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/SBend3D_map.field
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/ScalingFFAGMagnetTest.cpp
 mode change 100755 => 100644 tests/classic_src/AbsBeamline/VariableRFCavityTest.cpp
 mode change 100755 => 100644 tests/classic_src/Algorithms/CMakeLists.txt
 mode change 100755 => 100644 tests/classic_src/Algorithms/PolynomialTimeDependenceTest.cpp
 mode change 100755 => 100644 tests/classic_src/CMakeLists.txt
 mode change 100755 => 100644 tests/classic_src/Fields/CMakeLists.txt
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/CMakeLists.txt
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/NDGridTest.cpp
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/PPSolveFactoryTest.cpp
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/PolynomialPatchTest.cpp
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/SolveFactoryTest.cpp
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/SquarePolynomialVectorTest.cpp
 mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/ThreeDGridTest.cpp
 mode change 100755 => 100644 tests/classic_src/Utilities/CMakeLists.txt
 mode change 100755 => 100644 tests/classic_src/Utilities/RingSectionTest.cpp
 mode change 100755 => 100644 tests/ippl_src/CMakeLists.txt
 mode change 100755 => 100644 tests/ippl_src/Particle/CMakeLists.txt
 mode change 100755 => 100644 tests/ippl_src/Particle/EdgeCentering.cpp
 mode change 100755 => 100644 tests/opal_src/Algorithms/StatisticalErrors/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_src/Algorithms/StatisticalErrors/Test1.cpp
 mode change 100755 => 100644 tests/opal_src/Algorithms/StatisticalErrors/Test1.h
 mode change 100755 => 100644 tests/opal_src/BasicActions/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_src/BasicActions/DumpEMFieldsTest.cpp
 mode change 100755 => 100644 tests/opal_src/BasicActions/DumpFieldsTest.cpp
 mode change 100755 => 100644 tests/opal_src/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_src/Distribution/BinomialTest.cpp
 mode change 100755 => 100644 tests/opal_src/Distribution/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_src/Distribution/GaussTest.cpp
 mode change 100755 => 100644 tests/opal_src/Elements/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_src/Elements/OpalOffsetTest.cpp
 mode change 100755 => 100644 tests/opal_src/Elements/OpalPolynomialTimeDependenceTest.cpp
 mode change 100755 => 100644 tests/opal_src/Elements/OpalVariableRFCavityTest.cpp
 mode change 100755 => 100644 tests/opal_src/Utilities/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_src/Utilities/MockComponent.h
 mode change 100755 => 100644 tests/opal_test_utilities/CMakeLists.txt
 mode change 100755 => 100644 tests/opal_test_utilities/SilenceTest.cpp
 mode change 100755 => 100644 tests/opal_test_utilities/SilenceTest.h
 mode change 100755 => 100644 tests/sc/test-1.in
 mode change 100755 => 100644 tests/sc/test-2.in
 mode change 100755 => 100644 tests/sc/test-3.in
 mode change 100755 => 100644 tools/BandRF/Makefile.def
 mode change 100755 => 100644 tools/BandRF/Readme
 mode change 100755 => 100644 tools/BandRF/ascii2h5block_asgic.cpp
 mode change 100755 => 100644 tools/CMakeLists.txt
 mode change 100755 => 100644 tools/README
 mode change 100755 => 100644 tools/SDDS.patch
 mode change 100755 => 100644 tools/SDDSCMakeLists.tar.gz
 mode change 100755 => 100644 tools/SDDSReader/CMakeLists.txt
 mode change 100755 => 100644 tools/SDDSReader/config.h.in
 mode change 100755 => 100644 tools/SDDSReader/main.cpp
 mode change 100755 => 100644 tools/emacs/opal.el
 mode change 100755 => 100644 tools/opal2sdds/CMakeLists.txt
 mode change 100755 => 100644 tools/opal2sdds/config.h.in
 mode change 100755 => 100644 tools/opal2sdds/main.cpp
 mode change 100755 => 100644 tools/sdds2opal/CMakeLists.txt
 mode change 100755 => 100644 tools/sdds2opal/config.h.in
 mode change 100755 => 100644 tools/sdds2opal/main.cpp

diff --git a/.gitattributes b/.gitattributes
old mode 100755
new mode 100644
diff --git a/.gitignore b/.gitignore
old mode 100755
new mode 100644
diff --git a/CMakeLists.txt b/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/CMakeModules/FindGSL.cmake b/CMakeModules/FindGSL.cmake
old mode 100755
new mode 100644
diff --git a/CMakeModules/FindGTest.cmake b/CMakeModules/FindGTest.cmake
old mode 100755
new mode 100644
diff --git a/CMakeModules/FindH5Hut.cmake b/CMakeModules/FindH5Hut.cmake
old mode 100755
new mode 100644
diff --git a/CMakeModules/FindHDF5.cmake b/CMakeModules/FindHDF5.cmake
old mode 100755
new mode 100644
diff --git a/CMakeModules/FindSDDS.cmake b/CMakeModules/FindSDDS.cmake
old mode 100755
new mode 100644
diff --git a/Doxyfile b/Doxyfile
old mode 100755
new mode 100644
diff --git a/README.md b/README.md
old mode 100755
new mode 100644
diff --git a/cmake/OPALConfig.cmake.in b/cmake/OPALConfig.cmake.in
old mode 100755
new mode 100644
diff --git a/doc/randomnotes.txt b/doc/randomnotes.txt
old mode 100755
new mode 100644
diff --git a/doc/refcard/opal-ref-card-bibliography.bib b/doc/refcard/opal-ref-card-bibliography.bib
old mode 100755
new mode 100644
diff --git a/doc/refcard/opal-refcard.tex b/doc/refcard/opal-refcard.tex
old mode 100755
new mode 100644
diff --git a/ippl/CMakeLists.txt b/ippl/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/Doxyfile b/ippl/Doxyfile
old mode 100755
new mode 100644
diff --git a/ippl/INSTALL b/ippl/INSTALL
old mode 100755
new mode 100644
diff --git a/ippl/LICENSE b/ippl/LICENSE
old mode 100755
new mode 100644
diff --git a/ippl/README b/ippl/README
old mode 100755
new mode 100644
diff --git a/ippl/cmake/IPPLConfig.cmake.in b/ippl/cmake/IPPLConfig.cmake.in
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/dingbat.sty b/ippl/doc/tex/dingbat.sty
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/error_time.pdf b/ippl/doc/tex/error_time.pdf
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/figures/psi_logo_wide.eps b/ippl/doc/tex/figures/psi_logo_wide.eps
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/figures/psi_logo_wide.pdf b/ippl/doc/tex/figures/psi_logo_wide.pdf
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/greens.pdf b/ippl/doc/tex/greens.pdf
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/greens.ps b/ippl/doc/tex/greens.ps
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/html.sty b/ippl/doc/tex/html.sty
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/introduction.tex b/ippl/doc/tex/introduction.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_centering_ref.tex b/ippl/doc/tex/ippl_centering_ref.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_fft.tex b/ippl/doc/tex/ippl_fft.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_field_ref.tex b/ippl/doc/tex/ippl_field_ref.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_fieldlayout_ref.tex b/ippl/doc/tex/ippl_fieldlayout_ref.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_fields.tex b/ippl/doc/tex/ippl_fields.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_index_ref.tex b/ippl/doc/tex/ippl_index_ref.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_mesh_ref.tex b/ippl/doc/tex/ippl_mesh_ref.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_particles.tex b/ippl/doc/tex/ippl_particles.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_setup.tex b/ippl/doc/tex/ippl_setup.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/ippl_user_guide.tex b/ippl/doc/tex/ippl_user_guide.tex
old mode 100755
new mode 100644
diff --git a/ippl/doc/tex/pdfdraftcopy.sty b/ippl/doc/tex/pdfdraftcopy.sty
old mode 100755
new mode 100644
diff --git a/ippl/src/.gitignore b/ippl/src/.gitignore
old mode 100755
new mode 100644
diff --git a/ippl/src/AmrParticle/AmrParticleBase.h b/ippl/src/AmrParticle/AmrParticleBase.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AmrParticle/AmrParticleBase.hpp b/ippl/src/AmrParticle/AmrParticleBase.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AmrParticle/AmrParticleLevelCounter.h b/ippl/src/AmrParticle/AmrParticleLevelCounter.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AmrParticle/CMakeLists.txt b/ippl/src/AmrParticle/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/AmrParticle/ParticleAmrLayout.h b/ippl/src/AmrParticle/ParticleAmrLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/AntiSymTenzor.h b/ippl/src/AppTypes/AntiSymTenzor.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/AppTypeTraits.h b/ippl/src/AppTypes/AppTypeTraits.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/CMakeLists.txt b/ippl/src/AppTypes/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/GenVektor.h b/ippl/src/AppTypes/GenVektor.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/SymTenzor.h b/ippl/src/AppTypes/SymTenzor.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMeta.h b/ippl/src/AppTypes/TSVMeta.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaAssign.h b/ippl/src/AppTypes/TSVMetaAssign.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaBinary.h b/ippl/src/AppTypes/TSVMetaBinary.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaCompare.h b/ippl/src/AppTypes/TSVMetaCompare.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaCross.h b/ippl/src/AppTypes/TSVMetaCross.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaDot.h b/ippl/src/AppTypes/TSVMetaDot.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaDotDot.h b/ippl/src/AppTypes/TSVMetaDotDot.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/TSVMetaUnary.h b/ippl/src/AppTypes/TSVMetaUnary.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/Tenzor.h b/ippl/src/AppTypes/Tenzor.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/Vektor.h b/ippl/src/AppTypes/Vektor.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/dcomplex.h b/ippl/src/AppTypes/dcomplex.h
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp b/ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp b/ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp b/ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/SymTenzor_1D.cpp b/ippl/src/AppTypes/inst/SymTenzor_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/SymTenzor_2D.cpp b/ippl/src/AppTypes/inst/SymTenzor_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/SymTenzor_3D.cpp b/ippl/src/AppTypes/inst/SymTenzor_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/Tenzor_1D.cpp b/ippl/src/AppTypes/inst/Tenzor_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/Tenzor_2D.cpp b/ippl/src/AppTypes/inst/Tenzor_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/Tenzor_3D.cpp b/ippl/src/AppTypes/inst/Tenzor_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/Vektor_1D.cpp b/ippl/src/AppTypes/inst/Vektor_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/Vektor_2D.cpp b/ippl/src/AppTypes/inst/Vektor_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/AppTypes/inst/Vektor_3D.cpp b/ippl/src/AppTypes/inst/Vektor_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/CMakeLists.txt b/ippl/src/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/CMakeLists.txt b/ippl/src/DataSource/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataConnect.cpp b/ippl/src/DataSource/DataConnect.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataConnect.h b/ippl/src/DataSource/DataConnect.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataConnectCreator.cpp b/ippl/src/DataSource/DataConnectCreator.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataConnectCreator.h b/ippl/src/DataSource/DataConnectCreator.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataSource.cpp b/ippl/src/DataSource/DataSource.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataSource.h b/ippl/src/DataSource/DataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/DataSourceObject.h b/ippl/src/DataSource/DataSourceObject.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FieldDataSource.h b/ippl/src/DataSource/FieldDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FieldDataSource.hpp b/ippl/src/DataSource/FieldDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FileDataConnect.h b/ippl/src/DataSource/FileDataConnect.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FileFieldDataSource.h b/ippl/src/DataSource/FileFieldDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FileFieldDataSource.hpp b/ippl/src/DataSource/FileFieldDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FilePtclAttribDataSource.h b/ippl/src/DataSource/FilePtclAttribDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FilePtclAttribDataSource.hpp b/ippl/src/DataSource/FilePtclAttribDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FilePtclBaseDataSource.h b/ippl/src/DataSource/FilePtclBaseDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/FilePtclBaseDataSource.hpp b/ippl/src/DataSource/FilePtclBaseDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/MakeDataSource.h b/ippl/src/DataSource/MakeDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/MakeDataSource.hpp b/ippl/src/DataSource/MakeDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/PtclAttribDataSource.cpp b/ippl/src/DataSource/PtclAttribDataSource.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/PtclAttribDataSource.h b/ippl/src/DataSource/PtclAttribDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/PtclBaseDataSource.cpp b/ippl/src/DataSource/PtclBaseDataSource.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/PtclBaseDataSource.h b/ippl/src/DataSource/PtclBaseDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/ScalarDataSource.h b/ippl/src/DataSource/ScalarDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/ScalarDataSource.hpp b/ippl/src/DataSource/ScalarDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/StringDataSource.h b/ippl/src/DataSource/StringDataSource.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/StringDataSource.hpp b/ippl/src/DataSource/StringDataSource.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParAttribAppTypesDS_1D.cpp b/ippl/src/DataSource/inst/FileParAttribAppTypesDS_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParAttribAppTypesDS_2D.cpp b/ippl/src/DataSource/inst/FileParAttribAppTypesDS_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParAttribAppTypesDS_3D.cpp b/ippl/src/DataSource/inst/FileParAttribAppTypesDS_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParAttribDS_all.cpp b/ippl/src/DataSource/inst/FileParAttribDS_all.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_1D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_2D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_3D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_1D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_2D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_3D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_1D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_2D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_3D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_1D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_2D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_3D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseUniformDS_1D.cpp b/ippl/src/DataSource/inst/FileParBaseUniformDS_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseUniformDS_2D.cpp b/ippl/src/DataSource/inst/FileParBaseUniformDS_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DataSource/inst/FileParBaseUniformDS_3D.cpp b/ippl/src/DataSource/inst/FileParBaseUniformDS_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/DomainMap/CMakeLists.txt b/ippl/src/DomainMap/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/DomainMap/DomainMap.h b/ippl/src/DomainMap/DomainMap.h
old mode 100755
new mode 100644
diff --git a/ippl/src/DomainMap/DomainMap.hpp b/ippl/src/DomainMap/DomainMap.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/CMakeLists.txt b/ippl/src/FFT/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/FFT.h b/ippl/src/FFT/FFT.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/FFT.hpp b/ippl/src/FFT/FFT.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/FFTBase.h b/ippl/src/FFT/FFTBase.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/FFTBase.hpp b/ippl/src/FFT/FFTBase.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/SCSL_FFT.F b/ippl/src/FFT/SCSL_FFT.F
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/SCSL_FFT.h b/ippl/src/FFT/SCSL_FFT.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/c_utils.c b/ippl/src/FFT/c_utils.c
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/c_utils.h b/ippl/src/FFT/c_utils.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/f2c.h b/ippl/src/FFT/f2c.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/fftpack.F b/ippl/src/FFT/fftpack.F
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/fftpack.cpp b/ippl/src/FFT/fftpack.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/fftpack.h b/ippl/src/FFT/fftpack.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/fftpack_FFT.h b/ippl/src/FFT/fftpack_FFT.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FFT/fftpack_inc.c b/ippl/src/FFT/fftpack_inc.c
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/Assign.h b/ippl/src/Field/Assign.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/Assign.hpp b/ippl/src/Field/Assign.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/AssignDefs.h b/ippl/src/Field/AssignDefs.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/AssignGeneralBF.hpp b/ippl/src/Field/AssignGeneralBF.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/AssignGeneralIBF.hpp b/ippl/src/Field/AssignGeneralIBF.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/AssignTags.h b/ippl/src/Field/AssignTags.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BCond.h b/ippl/src/Field/BCond.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BCond.hpp b/ippl/src/Field/BCond.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BareField.h b/ippl/src/Field/BareField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BareField.hpp b/ippl/src/Field/BareField.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BareFieldIterator.h b/ippl/src/Field/BareFieldIterator.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BrickExpression.h b/ippl/src/Field/BrickExpression.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BrickExpression.hpp b/ippl/src/Field/BrickExpression.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BrickIterator.h b/ippl/src/Field/BrickIterator.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/BrickIterator.hpp b/ippl/src/Field/BrickIterator.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/CMakeLists.txt b/ippl/src/Field/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/CompressedBrickIterator.h b/ippl/src/Field/CompressedBrickIterator.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/CompressedBrickIterator.hpp b/ippl/src/Field/CompressedBrickIterator.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/Field.h b/ippl/src/Field/Field.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/Field.hpp b/ippl/src/Field/Field.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/FieldLoc.h b/ippl/src/Field/FieldLoc.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/FieldSpec.h b/ippl/src/Field/FieldSpec.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/GuardCellSizes.h b/ippl/src/Field/GuardCellSizes.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/GuardCellSizes.hpp b/ippl/src/Field/GuardCellSizes.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/IndexedBareField.h b/ippl/src/Field/IndexedBareField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/IndexedBareField.hpp b/ippl/src/Field/IndexedBareField.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/IndexedField.h b/ippl/src/Field/IndexedField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/LField.h b/ippl/src/Field/LField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/LField.hpp b/ippl/src/Field/LField.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/ReductionLoc.h b/ippl/src/Field/ReductionLoc.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/ReductionLoc.hpp b/ippl/src/Field/ReductionLoc.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp b/ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp b/ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp b/ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp b/ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp b/ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp b/ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp b/ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp b/ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp b/ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp b/ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp b/ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp b/ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareFieldAppTypes_1D.cpp b/ippl/src/Field/inst/BareFieldAppTypes_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareFieldAppTypes_2D.cpp b/ippl/src/Field/inst/BareFieldAppTypes_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareFieldAppTypes_3D.cpp b/ippl/src/Field/inst/BareFieldAppTypes_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_cmplx_1D.cpp b/ippl/src/Field/inst/BareField_cmplx_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_cmplx_2D.cpp b/ippl/src/Field/inst/BareField_cmplx_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_cmplx_3D.cpp b/ippl/src/Field/inst/BareField_cmplx_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_fp_1D.cpp b/ippl/src/Field/inst/BareField_fp_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_fp_2D.cpp b/ippl/src/Field/inst/BareField_fp_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_fp_3D.cpp b/ippl/src/Field/inst/BareField_fp_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_int_1D.cpp b/ippl/src/Field/inst/BareField_int_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_int_2D.cpp b/ippl/src/Field/inst/BareField_int_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/BareField_int_3D.cpp b/ippl/src/Field/inst/BareField_int_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Cell_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Cell_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Cell_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Vert_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Vert_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Vert_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Cell_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Cell_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Cell_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Vert_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Vert_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Vert_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Cart_Cell_1D.cpp b/ippl/src/Field/inst/Field_int_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Cart_Cell_2D.cpp b/ippl/src/Field/inst/Field_int_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Cart_Cell_3D.cpp b/ippl/src/Field/inst/Field_int_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Cart_Vert_1D.cpp b/ippl/src/Field/inst/Field_int_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Cart_Vert_2D.cpp b/ippl/src/Field/inst/Field_int_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Cart_Vert_3D.cpp b/ippl/src/Field/inst/Field_int_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Unif_Cell_1D.cpp b/ippl/src/Field/inst/Field_int_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Unif_Cell_2D.cpp b/ippl/src/Field/inst/Field_int_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Unif_Cell_3D.cpp b/ippl/src/Field/inst/Field_int_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Unif_Vert_1D.cpp b/ippl/src/Field/inst/Field_int_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Unif_Vert_2D.cpp b/ippl/src/Field/inst/Field_int_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/Field_int_Unif_Vert_3D.cpp b/ippl/src/Field/inst/Field_int_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/GuardCellSizes_1D.cpp b/ippl/src/Field/inst/GuardCellSizes_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/GuardCellSizes_2D.cpp b/ippl/src/Field/inst/GuardCellSizes_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/GuardCellSizes_3D.cpp b/ippl/src/Field/inst/GuardCellSizes_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/LFieldAppTypes_1D.cpp b/ippl/src/Field/inst/LFieldAppTypes_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/LFieldAppTypes_2D.cpp b/ippl/src/Field/inst/LFieldAppTypes_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/LFieldAppTypes_3D.cpp b/ippl/src/Field/inst/LFieldAppTypes_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/LField_1D.cpp b/ippl/src/Field/inst/LField_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/LField_2D.cpp b/ippl/src/Field/inst/LField_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Field/inst/LField_3D.cpp b/ippl/src/Field/inst/LField_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/BinaryBalancer.h b/ippl/src/FieldLayout/BinaryBalancer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/BinaryBalancer.hpp b/ippl/src/FieldLayout/BinaryBalancer.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/CMakeLists.txt b/ippl/src/FieldLayout/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/CenteredFieldLayout.h b/ippl/src/FieldLayout/CenteredFieldLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/CenteredFieldLayout.hpp b/ippl/src/FieldLayout/CenteredFieldLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/ConejoBalancer.h b/ippl/src/FieldLayout/ConejoBalancer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/ConejoBalancer.hpp b/ippl/src/FieldLayout/ConejoBalancer.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/ConejoBalancer_inst.cpp b/ippl/src/FieldLayout/ConejoBalancer_inst.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/FieldLayout.h b/ippl/src/FieldLayout/FieldLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/FieldLayout.hpp b/ippl/src/FieldLayout/FieldLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/FieldLayoutUser.cpp b/ippl/src/FieldLayout/FieldLayoutUser.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/FieldLayoutUser.h b/ippl/src/FieldLayout/FieldLayoutUser.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/MultiBalancer.cpp b/ippl/src/FieldLayout/MultiBalancer.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/MultiBalancer.h b/ippl/src/FieldLayout/MultiBalancer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/MultiBalancer.t.cpp b/ippl/src/FieldLayout/MultiBalancer.t.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/VRB.cpp b/ippl/src/FieldLayout/VRB.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/VRB.h b/ippl/src/FieldLayout/VRB.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/Vnode.h b/ippl/src/FieldLayout/Vnode.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/VnodeMultiBalancer.h b/ippl/src/FieldLayout/VnodeMultiBalancer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/VnodeMultiBalancer.hpp b/ippl/src/FieldLayout/VnodeMultiBalancer.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/FieldLayout_1D.cpp b/ippl/src/FieldLayout/inst/FieldLayout_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/FieldLayout_2D.cpp b/ippl/src/FieldLayout/inst/FieldLayout_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/FieldLayout/inst/FieldLayout_3D.cpp b/ippl/src/FieldLayout/inst/FieldLayout_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/CMakeLists.txt b/ippl/src/Index/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/Index.cpp b/ippl/src/Index/Index.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/Index.h b/ippl/src/Index/Index.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/IndexInlines.h b/ippl/src/Index/IndexInlines.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/IndexedSIndex.h b/ippl/src/Index/IndexedSIndex.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/LSIndex.h b/ippl/src/Index/LSIndex.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/NDIndex.h b/ippl/src/Index/NDIndex.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/NDIndexInlines.h b/ippl/src/Index/NDIndexInlines.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/SIndex.h b/ippl/src/Index/SIndex.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/SIndex.hpp b/ippl/src/Index/SIndex.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/SIndexAssign.h b/ippl/src/Index/SIndexAssign.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/SIndexAssign.hpp b/ippl/src/Index/SIndexAssign.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/SOffset.h b/ippl/src/Index/SOffset.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/LSIndex_1D.cpp b/ippl/src/Index/inst/LSIndex_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/LSIndex_2D.cpp b/ippl/src/Index/inst/LSIndex_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/LSIndex_3D.cpp b/ippl/src/Index/inst/LSIndex_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/NDIndex_1D.cpp b/ippl/src/Index/inst/NDIndex_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/NDIndex_2D.cpp b/ippl/src/Index/inst/NDIndex_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/NDIndex_3D.cpp b/ippl/src/Index/inst/NDIndex_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/SIndex_1D.cpp b/ippl/src/Index/inst/SIndex_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/SIndex_2D.cpp b/ippl/src/Index/inst/SIndex_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/SIndex_3D.cpp b/ippl/src/Index/inst/SIndex_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/SOffset_1D.cpp b/ippl/src/Index/inst/SOffset_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/SOffset_2D.cpp b/ippl/src/Index/inst/SOffset_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Index/inst/SOffset_3D.cpp b/ippl/src/Index/inst/SOffset_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Ippl.h b/ippl/src/Ippl.h
old mode 100755
new mode 100644
diff --git a/ippl/src/IpplVersions.h.in b/ippl/src/IpplVersions.h.in
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/CMakeLists.txt b/ippl/src/Meshes/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/Cartesian.h b/ippl/src/Meshes/Cartesian.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/Cartesian.hpp b/ippl/src/Meshes/Cartesian.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/CartesianCentering.h b/ippl/src/Meshes/CartesianCentering.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/CartesianCentering.hpp b/ippl/src/Meshes/CartesianCentering.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/CartesianCentering_inst.cpp b/ippl/src/Meshes/CartesianCentering_inst.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/CartesianStencilSetup.h b/ippl/src/Meshes/CartesianStencilSetup.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/Centering.cpp b/ippl/src/Meshes/Centering.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/Centering.h b/ippl/src/Meshes/Centering.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/Mesh.h b/ippl/src/Meshes/Mesh.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/Mesh.hpp b/ippl/src/Meshes/Mesh.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/UniformCartesian.h b/ippl/src/Meshes/UniformCartesian.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/UniformCartesian.hpp b/ippl/src/Meshes/UniformCartesian.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/Cartesian_1D.cpp b/ippl/src/Meshes/inst/Cartesian_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/Cartesian_2D.cpp b/ippl/src/Meshes/inst/Cartesian_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/Cartesian_3D.cpp b/ippl/src/Meshes/inst/Cartesian_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/Mesh_1D.cpp b/ippl/src/Meshes/inst/Mesh_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/Mesh_2D.cpp b/ippl/src/Meshes/inst/Mesh_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/Mesh_3D.cpp b/ippl/src/Meshes/inst/Mesh_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/UniformCartesian_1D.cpp b/ippl/src/Meshes/inst/UniformCartesian_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/UniformCartesian_2D.cpp b/ippl/src/Meshes/inst/UniformCartesian_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Meshes/inst/UniformCartesian_3D.cpp b/ippl/src/Meshes/inst/UniformCartesian_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CMakeLists.txt b/ippl/src/Message/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CRC.cpp b/ippl/src/Message/CRC.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CRC.h b/ippl/src/Message/CRC.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommCreator.cpp b/ippl/src/Message/CommCreator.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommCreator.h b/ippl/src/Message/CommCreator.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommMPI.cpp b/ippl/src/Message/CommMPI.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommMPI.h b/ippl/src/Message/CommMPI.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommPM.cpp b/ippl/src/Message/CommPM.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommPM.h b/ippl/src/Message/CommPM.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommSHMEMPI.cpp b/ippl/src/Message/CommSHMEMPI.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/CommSHMEMPI.h b/ippl/src/Message/CommSHMEMPI.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Communicate.cpp b/ippl/src/Message/Communicate.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Communicate.h b/ippl/src/Message/Communicate.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/DataTypes.h b/ippl/src/Message/DataTypes.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Formatter.cpp b/ippl/src/Message/Formatter.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Formatter.h b/ippl/src/Message/Formatter.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/GlobalComm.h b/ippl/src/Message/GlobalComm.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/GlobalComm.hpp b/ippl/src/Message/GlobalComm.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Message.h b/ippl/src/Message/Message.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Message.hpp b/ippl/src/Message/Message.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/MessageFunctions.cpp b/ippl/src/Message/MessageFunctions.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Operations.h b/ippl/src/Message/Operations.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/TagMaker.h b/ippl/src/Message/TagMaker.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Message/Tags.h b/ippl/src/Message/Tags.h
old mode 100755
new mode 100644
diff --git a/ippl/src/PETE/CMakeLists.txt b/ippl/src/PETE/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/PETE/IpplExpressions.h b/ippl/src/PETE/IpplExpressions.h
old mode 100755
new mode 100644
diff --git a/ippl/src/PETE/IpplTypeComputations.h b/ippl/src/PETE/IpplTypeComputations.h
old mode 100755
new mode 100644
diff --git a/ippl/src/PETE/PETE.h b/ippl/src/PETE/PETE.h
old mode 100755
new mode 100644
diff --git a/ippl/src/PETE/TypeComputations.h b/ippl/src/PETE/TypeComputations.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/AbstractParticle.h b/ippl/src/Particle/AbstractParticle.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/BoxParticleCachingPolicy.h b/ippl/src/Particle/BoxParticleCachingPolicy.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/CMakeLists.txt b/ippl/src/Particle/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/CellParticleCachingPolicy.h b/ippl/src/Particle/CellParticleCachingPolicy.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/GenArrayParticle.h b/ippl/src/Particle/GenArrayParticle.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/GenParticle.h b/ippl/src/Particle/GenParticle.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/IntCIC.h b/ippl/src/Particle/IntCIC.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/IntNGP.h b/ippl/src/Particle/IntNGP.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/IntSUDS.h b/ippl/src/Particle/IntSUDS.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/IntTSC.h b/ippl/src/Particle/IntTSC.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/Interpolator.h b/ippl/src/Particle/Interpolator.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/IpplParticleBase.h b/ippl/src/Particle/IpplParticleBase.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/IpplParticleBase.hpp b/ippl/src/Particle/IpplParticleBase.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/NoParticleCachingPolicy.h b/ippl/src/Particle/NoParticleCachingPolicy.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PAssign.h b/ippl/src/Particle/PAssign.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PAssign.hpp b/ippl/src/Particle/PAssign.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PAssignDefs.h b/ippl/src/Particle/PAssignDefs.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/BasicPairBuilder.h b/ippl/src/Particle/PairBuilder/BasicPairBuilder.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/CMakeLists.txt b/ippl/src/Particle/PairBuilder/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilder.h b/ippl/src/Particle/PairBuilder/HashPairBuilder.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodic.h b/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodic.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel.h b/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel_globCHaining.h b/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel_globCHaining.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/PairConditions.h b/ippl/src/Particle/PairBuilder/PairConditions.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/PairBuilder/SortingPairBuilder.h b/ippl/src/Particle/PairBuilder/SortingPairBuilder.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleAttrib.h b/ippl/src/Particle/ParticleAttrib.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleAttrib.hpp b/ippl/src/Particle/ParticleAttrib.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleAttribBase.h b/ippl/src/Particle/ParticleAttribBase.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleAttribElem.h b/ippl/src/Particle/ParticleAttribElem.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleBConds.h b/ippl/src/Particle/ParticleBConds.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleBalancer.h b/ippl/src/Particle/ParticleBalancer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleBalancer.hpp b/ippl/src/Particle/ParticleBalancer.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleCashedLayout.h b/ippl/src/Particle/ParticleCashedLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleCashedLayout.hpp b/ippl/src/Particle/ParticleCashedLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleInteractAttrib.h b/ippl/src/Particle/ParticleInteractAttrib.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleInteractAttrib.hpp b/ippl/src/Particle/ParticleInteractAttrib.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleInteractLayout.h b/ippl/src/Particle/ParticleInteractLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleInteractLayout.hpp b/ippl/src/Particle/ParticleInteractLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleLayout.h b/ippl/src/Particle/ParticleLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleLayout.hpp b/ippl/src/Particle/ParticleLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleLayoutFromGrid.cpp b/ippl/src/Particle/ParticleLayoutFromGrid.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleLayoutFromGrid.h b/ippl/src/Particle/ParticleLayoutFromGrid.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleSpatialLayout.cppNudge b/ippl/src/Particle/ParticleSpatialLayout.cppNudge
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleSpatialLayout.h b/ippl/src/Particle/ParticleSpatialLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleSpatialLayout.hNudge b/ippl/src/Particle/ParticleSpatialLayout.hNudge
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleSpatialLayout.hpp b/ippl/src/Particle/ParticleSpatialLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleUniformLayout.h b/ippl/src/Particle/ParticleUniformLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/ParticleUniformLayout.hpp b/ippl/src/Particle/ParticleUniformLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleAttribAppTypes_1D.cpp b/ippl/src/Particle/inst/ParticleAttribAppTypes_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleAttribAppTypes_2D.cpp b/ippl/src/Particle/inst/ParticleAttribAppTypes_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleAttribAppTypes_3D.cpp b/ippl/src/Particle/inst/ParticleAttribAppTypes_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleAttrib_all.cpp b/ippl/src/Particle/inst/ParticleAttrib_all.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBConds_1D.cpp b/ippl/src/Particle/inst/ParticleBConds_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBConds_2D.cpp b/ippl/src/Particle/inst/ParticleBConds_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBConds_3D.cpp b/ippl/src/Particle/inst/ParticleBConds_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseUniform_1D.cpp b/ippl/src/Particle/inst/ParticleBaseUniform_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseUniform_2D.cpp b/ippl/src/Particle/inst/ParticleBaseUniform_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleBaseUniform_3D.cpp b/ippl/src/Particle/inst/ParticleBaseUniform_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_1D.cpp b/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_2D.cpp b/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_3D.cpp b/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractAttrib_all.cpp b/ippl/src/Particle/inst/ParticleInteractAttrib_all.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleLayout_1D.cpp b/ippl/src/Particle/inst/ParticleLayout_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleLayout_2D.cpp b/ippl/src/Particle/inst/ParticleLayout_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleLayout_3D.cpp b/ippl/src/Particle/inst/ParticleLayout_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleUniformLayout_1D.cpp b/ippl/src/Particle/inst/ParticleUniformLayout_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleUniformLayout_2D.cpp b/ippl/src/Particle/inst/ParticleUniformLayout_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Particle/inst/ParticleUniformLayout_3D.cpp b/ippl/src/Particle/inst/ParticleUniformLayout_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Profile/CMakeLists.txt b/ippl/src/Profile/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Profile/Profiler.cpp b/ippl/src/Profile/Profiler.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Profile/Profiler.h b/ippl/src/Profile/Profiler.h
old mode 100755
new mode 100644
diff --git a/ippl/src/ReadMeBuild b/ippl/src/ReadMeBuild
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/CMakeLists.txt b/ippl/src/Region/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/NDRegion.h b/ippl/src/Region/NDRegion.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/PRegion.h b/ippl/src/Region/PRegion.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/RegionLayout.h b/ippl/src/Region/RegionLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/RegionLayout.hpp b/ippl/src/Region/RegionLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/Rnode.h b/ippl/src/Region/Rnode.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/NDRegion_1D.cpp b/ippl/src/Region/inst/NDRegion_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/NDRegion_2D.cpp b/ippl/src/Region/inst/NDRegion_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/NDRegion_3D.cpp b/ippl/src/Region/inst/NDRegion_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/PRegion_all.cpp b/ippl/src/Region/inst/PRegion_all.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/RegionLayout_Cart_1D.cpp b/ippl/src/Region/inst/RegionLayout_Cart_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/RegionLayout_Cart_2D.cpp b/ippl/src/Region/inst/RegionLayout_Cart_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/RegionLayout_Cart_3D.cpp b/ippl/src/Region/inst/RegionLayout_Cart_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/RegionLayout_Unif_1D.cpp b/ippl/src/Region/inst/RegionLayout_Unif_1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/RegionLayout_Unif_2D.cpp b/ippl/src/Region/inst/RegionLayout_Unif_2D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Region/inst/RegionLayout_Unif_3D.cpp b/ippl/src/Region/inst/RegionLayout_Unif_3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/CMakeLists.txt b/ippl/src/SubField/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubBareField.h b/ippl/src/SubField/SubBareField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubBareField.hpp b/ippl/src/SubField/SubBareField.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubField.h b/ippl/src/SubField/SubField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubField.hpp b/ippl/src/SubField/SubField.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubFieldAssign.h b/ippl/src/SubField/SubFieldAssign.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubFieldAssign.hpp b/ippl/src/SubField/SubFieldAssign.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubFieldAssignDefs.h b/ippl/src/SubField/SubFieldAssignDefs.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubFieldIter.h b/ippl/src/SubField/SubFieldIter.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubField/SubFieldTraits.h b/ippl/src/SubField/SubFieldTraits.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubParticle/CMakeLists.txt b/ippl/src/SubParticle/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/SubParticle/SubParticleAssign.h b/ippl/src/SubParticle/SubParticleAssign.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubParticle/SubParticleAssign.hpp b/ippl/src/SubParticle/SubParticleAssign.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/SubParticle/SubParticleAssignDefs.h b/ippl/src/SubParticle/SubParticleAssignDefs.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubParticle/SubParticleAttrib.h b/ippl/src/SubParticle/SubParticleAttrib.h
old mode 100755
new mode 100644
diff --git a/ippl/src/SubParticle/SubParticleAttrib.hpp b/ippl/src/SubParticle/SubParticleAttrib.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/CMakeLists.txt b/ippl/src/Utility/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscBuffer.cpp b/ippl/src/Utility/DiscBuffer.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscBuffer.h b/ippl/src/Utility/DiscBuffer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscConfig.cpp b/ippl/src/Utility/DiscConfig.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscConfig.h b/ippl/src/Utility/DiscConfig.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscField.h b/ippl/src/Utility/DiscField.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscField.hpp b/ippl/src/Utility/DiscField.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscMeta.cpp b/ippl/src/Utility/DiscMeta.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscMeta.h b/ippl/src/Utility/DiscMeta.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscParticle.h b/ippl/src/Utility/DiscParticle.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscParticle.hpp b/ippl/src/Utility/DiscParticle.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscParticleFunctions.cpp b/ippl/src/Utility/DiscParticleFunctions.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/DiscType.h b/ippl/src/Utility/DiscType.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldBlock.h b/ippl/src/Utility/FieldBlock.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldBlock.hpp b/ippl/src/Utility/FieldBlock.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldDebug.h b/ippl/src/Utility/FieldDebug.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldDebug.hpp b/ippl/src/Utility/FieldDebug.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldDebugFunctions.cpp b/ippl/src/Utility/FieldDebugFunctions.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldDebugFunctions.h b/ippl/src/Utility/FieldDebugFunctions.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldDebugPrint.h b/ippl/src/Utility/FieldDebugPrint.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldDebugPrint.hpp b/ippl/src/Utility/FieldDebugPrint.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldPrint.h b/ippl/src/Utility/FieldPrint.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldPrint.hpp b/ippl/src/Utility/FieldPrint.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldView.h b/ippl/src/Utility/FieldView.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/FieldView.hpp b/ippl/src/Utility/FieldView.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Inform.cpp b/ippl/src/Utility/Inform.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Inform.h b/ippl/src/Utility/Inform.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IplCounter.h b/ippl/src/Utility/IplCounter.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplCounter.cpp b/ippl/src/Utility/IpplCounter.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplCounter.h b/ippl/src/Utility/IpplCounter.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplException.h b/ippl/src/Utility/IpplException.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplInfo.cpp b/ippl/src/Utility/IpplInfo.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplInfo.h b/ippl/src/Utility/IpplInfo.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplMemoryUsage.cpp b/ippl/src/Utility/IpplMemoryUsage.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplMemoryUsage.h b/ippl/src/Utility/IpplMemoryUsage.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplMessageCounter.cpp b/ippl/src/Utility/IpplMessageCounter.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplMessageCounter.h b/ippl/src/Utility/IpplMessageCounter.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplStats.cpp b/ippl/src/Utility/IpplStats.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplStats.h b/ippl/src/Utility/IpplStats.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplTimings.cpp b/ippl/src/Utility/IpplTimings.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/IpplTimings.h b/ippl/src/Utility/IpplTimings.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/NamedObj.h b/ippl/src/Utility/NamedObj.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/PAssert.cpp b/ippl/src/Utility/PAssert.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/PAssert.h b/ippl/src/Utility/PAssert.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/ParticleDebug.h b/ippl/src/Utility/ParticleDebug.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/ParticleDebug.hpp b/ippl/src/Utility/ParticleDebug.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/ParticleDebugFunctions.cpp b/ippl/src/Utility/ParticleDebugFunctions.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/ParticleDebugFunctions.h b/ippl/src/Utility/ParticleDebugFunctions.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Pool.cpp b/ippl/src/Utility/Pool.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Pool.h b/ippl/src/Utility/Pool.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Pooled.h b/ippl/src/Utility/Pooled.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Pooled.hpp b/ippl/src/Utility/Pooled.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGAssignDefs.h b/ippl/src/Utility/RNGAssignDefs.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGBitReverse.h b/ippl/src/Utility/RNGBitReverse.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGLattice.h b/ippl/src/Utility/RNGLattice.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGRand.h b/ippl/src/Utility/RNGRand.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGSimple.cpp b/ippl/src/Utility/RNGSimple.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGSimple.h b/ippl/src/Utility/RNGSimple.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGXCI.cpp b/ippl/src/Utility/RNGXCI.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGXCI.h b/ippl/src/Utility/RNGXCI.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGXDiv.cpp b/ippl/src/Utility/RNGXDiv.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RNGXDiv.h b/ippl/src/Utility/RNGXDiv.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RandomNumberGen.cpp b/ippl/src/Utility/RandomNumberGen.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RandomNumberGen.h b/ippl/src/Utility/RandomNumberGen.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RefBlock.h b/ippl/src/Utility/RefBlock.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/RefCounted.h b/ippl/src/Utility/RefCounted.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/SequenceGen.h b/ippl/src/Utility/SequenceGen.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/StaticIpplInfo.cpp b/ippl/src/Utility/StaticIpplInfo.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/StaticIpplInfo.h b/ippl/src/Utility/StaticIpplInfo.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Timer.cpp b/ippl/src/Utility/Timer.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Timer.h b/ippl/src/Utility/Timer.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Unique.cpp b/ippl/src/Utility/Unique.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Unique.h b/ippl/src/Utility/Unique.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/User.cpp b/ippl/src/Utility/User.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/User.h b/ippl/src/Utility/User.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/UserList.cpp b/ippl/src/Utility/UserList.cpp
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/UserList.h b/ippl/src/Utility/UserList.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/Vec.h b/ippl/src/Utility/Vec.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/my_auto_ptr.h b/ippl/src/Utility/my_auto_ptr.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/vmap.h b/ippl/src/Utility/vmap.h
old mode 100755
new mode 100644
diff --git a/ippl/src/Utility/vmap.hpp b/ippl/src/Utility/vmap.hpp
old mode 100755
new mode 100644
diff --git a/ippl/src/config.h.in b/ippl/src/config.h.in
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/.job b/ippl/test/6dtrack/.job
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/CMakeLists.txt b/ippl/test/6dtrack/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.cpp b/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.hh b/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTConfigure/GTConfigure.hh b/ippl/test/6dtrack/GTConfigure/GTConfigure.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/GTDistribution.cc b/ippl/test/6dtrack/GTDistribution/GTDistribution.cc
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/GTDistribution.hh b/ippl/test/6dtrack/GTDistribution/GTDistribution.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/hammersley.cpp b/ippl/test/6dtrack/GTDistribution/hammersley.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/hammersley.h b/ippl/test/6dtrack/GTDistribution/hammersley.h
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/makeranlib b/ippl/test/6dtrack/GTDistribution/makeranlib
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/ranlib.cc b/ippl/test/6dtrack/GTDistribution/ranlib.cc
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTDistribution/ranlib.h b/ippl/test/6dtrack/GTDistribution/ranlib.h
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/ACG.cpp b/ippl/test/6dtrack/GTElements/ACG.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/ACG.h b/ippl/test/6dtrack/GTElements/ACG.h
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/Elements.hh b/ippl/test/6dtrack/GTElements/Elements.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTElemData.hh b/ippl/test/6dtrack/GTElements/GTElemData.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTGenElement.hh b/ippl/test/6dtrack/GTElements/GTGenElement.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTIBS.hh b/ippl/test/6dtrack/GTElements/GTIBS.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTMultipoleMap.hh b/ippl/test/6dtrack/GTElements/GTMultipoleMap.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTRFCavityMap.hh b/ippl/test/6dtrack/GTElements/GTRFCavityMap.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTRadiation.hh b/ippl/test/6dtrack/GTElements/GTRadiation.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/GTRecquadMap.hh b/ippl/test/6dtrack/GTElements/GTRecquadMap.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/IBSProcess.cpp b/ippl/test/6dtrack/GTElements/IBSProcess.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/IBSProcess.h b/ippl/test/6dtrack/GTElements/IBSProcess.h
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/Merlin/PhotonSpectrumGen.cpp b/ippl/test/6dtrack/GTElements/Merlin/PhotonSpectrumGen.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.cpp b/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.h b/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.h
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/Makefile b/ippl/test/6dtrack/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/Makefile.def b/ippl/test/6dtrack/Makefile.def
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/dsmc6d.cpp b/ippl/test/6dtrack/dsmc6d.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/lat1.dat b/ippl/test/6dtrack/lat1.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/lat60.dat b/ippl/test/6dtrack/lat60.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/lat61.dat b/ippl/test/6dtrack/lat61.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/lat64.dat b/ippl/test/6dtrack/lat64.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/lat65.dat b/ippl/test/6dtrack/lat65.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/6dtrack/lat66.dat b/ippl/test/6dtrack/lat66.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/AmrDoxyfile b/ippl/test/AMR/AmrDoxyfile
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/AmrOpal.cpp b/ippl/test/AMR/AmrOpal.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/AmrOpal.h b/ippl/test/AMR/AmrOpal.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/AmrOpal_F.h b/ippl/test/AMR/AmrOpal_F.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/CMakeLists.txt b/ippl/test/AMR/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/Distribution.cpp b/ippl/test/AMR/Distribution.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/Distribution.h b/ippl/test/AMR/Distribution.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/H5Reader.cpp b/ippl/test/AMR/H5Reader.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/H5Reader.h b/ippl/test/AMR/H5Reader.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/MGTSolver.cpp b/ippl/test/AMR/MGTSolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/MGTSolver.h b/ippl/test/AMR/MGTSolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/README b/ippl/test/AMR/README
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/Solver.cpp b/ippl/test/AMR/Solver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/Solver.h b/ippl/test/AMR/Solver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/Tagging_nd.f90 b/ippl/test/AMR/Tagging_nd.f90
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/AssignMultiLevelDensity.cpp b/ippl/test/AMR/amrex-only/AssignMultiLevelDensity.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/CMakeLists.txt b/ippl/test/AMR/amrex-only/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/Solver.cpp b/ippl/test/AMR/amrex-only/Solver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/Solver.h b/ippl/test/AMR/amrex-only/Solver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/inputs b/ippl/test/AMR/amrex-only/inputs
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/testDeposition.cpp b/ippl/test/AMR/amrex-only/testDeposition.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/testDepositionFail.cpp b/ippl/test/AMR/amrex-only/testDepositionFail.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/testGeometry.cpp b/ippl/test/AMR/amrex-only/testGeometry.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/amrex-only/testSolverFail.cpp b/ippl/test/AMR/amrex-only/testSolverFail.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp b/ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/AmrPartBunch.h b/ippl/test/AMR/boxlib-amr/AmrPartBunch.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/CMakeLists.txt b/ippl/test/AMR/boxlib-amr/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/PartBunch.h b/ippl/test/AMR/boxlib-amr/PartBunch.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/PartBunchBase.h b/ippl/test/AMR/boxlib-amr/PartBunchBase.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/PoissonProblems.cpp b/ippl/test/AMR/boxlib-amr/PoissonProblems.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/PoissonProblems.h b/ippl/test/AMR/boxlib-amr/PoissonProblems.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/error.cpp b/ippl/test/AMR/boxlib-amr/error.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/iterative.cpp b/ippl/test/AMR/boxlib-amr/iterative.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp b/ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testGaussian.cpp b/ippl/test/AMR/boxlib-amr/testGaussian.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testGridSolve.cpp b/ippl/test/AMR/boxlib-amr/testGridSolve.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testH5Read.cpp b/ippl/test/AMR/boxlib-amr/testH5Read.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testHdf5.cpp b/ippl/test/AMR/boxlib-amr/testHdf5.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testMultiBunch.cpp b/ippl/test/AMR/boxlib-amr/testMultiBunch.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testOldPerformance.cpp b/ippl/test/AMR/boxlib-amr/testOldPerformance.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testOldPlasma.cpp b/ippl/test/AMR/boxlib-amr/testOldPlasma.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testPerfectLoadBalancing.cpp b/ippl/test/AMR/boxlib-amr/testPerfectLoadBalancing.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testReal.cpp b/ippl/test/AMR/boxlib-amr/testReal.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testSolver.cpp b/ippl/test/AMR/boxlib-amr/testSolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testTracker.cpp b/ippl/test/AMR/boxlib-amr/testTracker.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testUnifSphere.cpp b/ippl/test/AMR/boxlib-amr/testUnifSphere.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testUnifSphereGrid.cpp b/ippl/test/AMR/boxlib-amr/testUnifSphereGrid.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/testUniform.cpp b/ippl/test/AMR/boxlib-amr/testUniform.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/boxlib-amr/toFile.cpp b/ippl/test/AMR/boxlib-amr/toFile.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/helper_functions.h b/ippl/test/AMR/helper_functions.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/AmrParticleBase.h b/ippl/test/AMR/ippl-amr/AmrParticleBase.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/AmrParticleBase.hpp b/ippl/test/AMR/ippl-amr/AmrParticleBase.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/CMakeLists.txt b/ippl/test/AMR/ippl-amr/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/LevelNumCounter.h b/ippl/test/AMR/ippl-amr/LevelNumCounter.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/PartBunchAmr.h b/ippl/test/AMR/ippl-amr/PartBunchAmr.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/ParticleAmrLayout.h b/ippl/test/AMR/ippl-amr/ParticleAmrLayout.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp b/ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/inputs b/ippl/test/AMR/ippl-amr/inputs
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testAmrPartBase.cpp b/ippl/test/AMR/ippl-amr/testAmrPartBase.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testCRTP.cpp b/ippl/test/AMR/ippl-amr/testCRTP.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testDomainTransformSolve.cpp b/ippl/test/AMR/ippl-amr/testDomainTransformSolve.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testFromH5.cpp b/ippl/test/AMR/ippl-amr/testFromH5.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testGaussian.cpp b/ippl/test/AMR/ippl-amr/testGaussian.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testInitGuessSolver.cpp b/ippl/test/AMR/ippl-amr/testInitGuessSolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testInitialBox.cpp b/ippl/test/AMR/ippl-amr/testInitialBox.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testLayout.cpp b/ippl/test/AMR/ippl-amr/testLayout.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testMultipleSources.cpp b/ippl/test/AMR/ippl-amr/testMultipleSources.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testNewTracker.cpp b/ippl/test/AMR/ippl-amr/testNewTracker.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testPerformance.cpp b/ippl/test/AMR/ippl-amr/testPerformance.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testPlasma.cpp b/ippl/test/AMR/ippl-amr/testPlasma.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testScatterAMReX.cpp b/ippl/test/AMR/ippl-amr/testScatterAMReX.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testTagging.cpp b/ippl/test/AMR/ippl-amr/testTagging.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testUnifBox.cpp b/ippl/test/AMR/ippl-amr/testUnifBox.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-amr/testUnifSphere.cpp b/ippl/test/AMR/ippl-amr/testUnifSphere.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-bunch/AmrPartBunch.h b/ippl/test/AMR/ippl-bunch/AmrPartBunch.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-bunch/CMakeLists.txt b/ippl/test/AMR/ippl-bunch/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-bunch/PartBunch.h b/ippl/test/AMR/ippl-bunch/PartBunch.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-bunch/PartBunchBase.h b/ippl/test/AMR/ippl-bunch/PartBunchBase.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-bunch/testAdapterPattern.cpp b/ippl/test/AMR/ippl-bunch/testAdapterPattern.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/ippl-bunch/testCRTP.cpp b/ippl/test/AMR/ippl-bunch/testCRTP.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/Amesos2BottomSolver.h b/ippl/test/AMR/trilinos/Amesos2BottomSolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/Amesos2BottomSolver.hpp b/ippl/test/AMR/trilinos/Amesos2BottomSolver.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrBoundary.h b/ippl/test/AMR/trilinos/AmrBoundary.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrDirichletBoundary.h b/ippl/test/AMR/trilinos/AmrDirichletBoundary.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrInterpolater.h b/ippl/test/AMR/trilinos/AmrInterpolater.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.h b/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.hpp b/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrMultiGrid.cpp b/ippl/test/AMR/trilinos/AmrMultiGrid.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrMultiGrid.h b/ippl/test/AMR/trilinos/AmrMultiGrid.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrMultiGridCore.h b/ippl/test/AMR/trilinos/AmrMultiGridCore.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrMultiGridDefs.h b/ippl/test/AMR/trilinos/AmrMultiGridDefs.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrMultiGridLevel.h b/ippl/test/AMR/trilinos/AmrMultiGridLevel.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp b/ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrOpenBoundary.h b/ippl/test/AMR/trilinos/AmrOpenBoundary.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrPCInterpolater.h b/ippl/test/AMR/trilinos/AmrPCInterpolater.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrPCInterpolater.hpp b/ippl/test/AMR/trilinos/AmrPCInterpolater.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrPeriodicBoundary.h b/ippl/test/AMR/trilinos/AmrPeriodicBoundary.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrPreconditioner.h b/ippl/test/AMR/trilinos/AmrPreconditioner.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrRedistributor.cpp b/ippl/test/AMR/trilinos/AmrRedistributor.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrRedistributor.h b/ippl/test/AMR/trilinos/AmrRedistributor.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrSmoother.cpp b/ippl/test/AMR/trilinos/AmrSmoother.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrSmoother.h b/ippl/test/AMR/trilinos/AmrSmoother.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.h b/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.hpp b/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/BelosBottomSolver.h b/ippl/test/AMR/trilinos/BelosBottomSolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/BelosBottomSolver.hpp b/ippl/test/AMR/trilinos/BelosBottomSolver.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/BottomSolver.h b/ippl/test/AMR/trilinos/BottomSolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/CMakeLists.txt b/ippl/test/AMR/trilinos/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/FFTBottomSolver.cpp b/ippl/test/AMR/trilinos/FFTBottomSolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/FFTBottomSolver.h b/ippl/test/AMR/trilinos/FFTBottomSolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/Ifpack2Preconditioner.h b/ippl/test/AMR/trilinos/Ifpack2Preconditioner.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/Ifpack2Preconditioner.hpp b/ippl/test/AMR/trilinos/Ifpack2Preconditioner.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/MueLuBottomSolver.h b/ippl/test/AMR/trilinos/MueLuBottomSolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/MueLuBottomSolver.hpp b/ippl/test/AMR/trilinos/MueLuBottomSolver.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/MueLuPreconditioner.h b/ippl/test/AMR/trilinos/MueLuPreconditioner.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/MueLuPreconditioner.hpp b/ippl/test/AMR/trilinos/MueLuPreconditioner.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/build.h b/ippl/test/AMR/trilinos/build.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testAmrMultigrid.cpp b/ippl/test/AMR/trilinos/testAmrMultigrid.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testBitPattern.cpp b/ippl/test/AMR/trilinos/testBitPattern.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testBoundaryMatrix.cpp b/ippl/test/AMR/trilinos/testBoundaryMatrix.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testBoundaryVector.cpp b/ippl/test/AMR/trilinos/testBoundaryVector.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testCopy.cpp b/ippl/test/AMR/trilinos/testCopy.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testInterpolationMatrix.cpp b/ippl/test/AMR/trilinos/testInterpolationMatrix.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testLagrange.cpp b/ippl/test/AMR/trilinos/testLagrange.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testNoFine.cpp b/ippl/test/AMR/trilinos/testNoFine.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testPoissonMatrix.cpp b/ippl/test/AMR/trilinos/testPoissonMatrix.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testRestrictionMatrix.cpp b/ippl/test/AMR/trilinos/testRestrictionMatrix.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testSmootherMatrix.cpp b/ippl/test/AMR/trilinos/testSmootherMatrix.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testSolverComparison.cpp b/ippl/test/AMR/trilinos/testSolverComparison.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testSpecialPoissonMatrix.cpp b/ippl/test/AMR/trilinos/testSpecialPoissonMatrix.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testTrilinosSolver.cpp b/ippl/test/AMR/trilinos/testTrilinosSolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/testWithFine.cpp b/ippl/test/AMR/trilinos/testWithFine.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/tools.h b/ippl/test/AMR/trilinos/tools.h
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/trilinos/trilinos2ippl.cpp b/ippl/test/AMR/trilinos/trilinos2ippl.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/AMR/writePlotFile.H b/ippl/test/AMR/writePlotFile.H
old mode 100755
new mode 100644
diff --git a/ippl/test/CMakeLists.txt b/ippl/test/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/Cartesian/CMakeLists.txt b/ippl/test/Cartesian/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/Cartesian/Makefile b/ippl/test/Cartesian/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/Cartesian/TestCartesian-1.cpp b/ippl/test/Cartesian/TestCartesian-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/CMakeLists.txt b/ippl/test/CavityTrack/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/CavitySolver.cpp b/ippl/test/CavityTrack/CavitySolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/CavitySolver.h b/ippl/test/CavityTrack/CavitySolver.h
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/ChargedParticles/ChargedParticles.hh b/ippl/test/CavityTrack/ChargedParticles/ChargedParticles.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Distribution/Distribution.cpp b/ippl/test/CavityTrack/Distribution/Distribution.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Distribution/Distribution.hh b/ippl/test/CavityTrack/Distribution/Distribution.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Distribution/makefile b/ippl/test/CavityTrack/Distribution/makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Distribution/ranlib.cc b/ippl/test/CavityTrack/Distribution/ranlib.cc
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Makefile b/ippl/test/CavityTrack/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/TestRun/fort.22 b/ippl/test/CavityTrack/TestRun/fort.22
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/CavAccel-1.mws b/ippl/test/CavityTrack/Validation/CavAccel-1.mws
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/ReadMe b/ippl/test/CavityTrack/Validation/ReadMe
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/makePlot.glp b/ippl/test/CavityTrack/Validation/makePlot.glp
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/swk/getPosVel.swk b/ippl/test/CavityTrack/Validation/swk/getPosVel.swk
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/swk/sk-Tint.swk b/ippl/test/CavityTrack/Validation/swk/sk-Tint.swk
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/swk/sk-Tint2.swk b/ippl/test/CavityTrack/Validation/swk/sk-Tint2.swk
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/Validation/trial.mws b/ippl/test/CavityTrack/Validation/trial.mws
old mode 100755
new mode 100644
diff --git a/ippl/test/CavityTrack/cavitytrack.cpp b/ippl/test/CavityTrack/cavitytrack.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/CMakeLists.txt b/ippl/test/FFT/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/Makefile b/ippl/test/FFT/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/TestA-DAccuracy.ps b/ippl/test/FFT/SeaborgRes/SPP/TestA-DAccuracy.ps
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps b/ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestD128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestD128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestD256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestD256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestD512.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestD512.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl b/ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestD128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestD128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestD256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestD256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestD512.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestD512.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps b/ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps b/ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps b/ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp b/ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp b/ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp b/ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestFFT.cpp b/ippl/test/FFT/SeaborgRes/TestFFT.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/TestRC.cpp b/ippl/test/FFT/SeaborgRes/TestRC.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA1024.out b/ippl/test/FFT/SeaborgRes/data/TestA1024.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA128.out b/ippl/test/FFT/SeaborgRes/data/TestA128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA16.out b/ippl/test/FFT/SeaborgRes/data/TestA16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA256.out b/ippl/test/FFT/SeaborgRes/data/TestA256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA32.out b/ippl/test/FFT/SeaborgRes/data/TestA32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA512.out b/ippl/test/FFT/SeaborgRes/data/TestA512.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestA64.out b/ippl/test/FFT/SeaborgRes/data/TestA64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB1024.out b/ippl/test/FFT/SeaborgRes/data/TestB1024.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB128.out b/ippl/test/FFT/SeaborgRes/data/TestB128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB16.out b/ippl/test/FFT/SeaborgRes/data/TestB16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB256.out b/ippl/test/FFT/SeaborgRes/data/TestB256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB32.out b/ippl/test/FFT/SeaborgRes/data/TestB32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB512.out b/ippl/test/FFT/SeaborgRes/data/TestB512.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestB64.out b/ippl/test/FFT/SeaborgRes/data/TestB64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC1024.out b/ippl/test/FFT/SeaborgRes/data/TestC1024.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC128.out b/ippl/test/FFT/SeaborgRes/data/TestC128.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC16.out b/ippl/test/FFT/SeaborgRes/data/TestC16.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC256.out b/ippl/test/FFT/SeaborgRes/data/TestC256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC32.out b/ippl/test/FFT/SeaborgRes/data/TestC32.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC512.out b/ippl/test/FFT/SeaborgRes/data/TestC512.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestC64.out b/ippl/test/FFT/SeaborgRes/data/TestC64.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/TestD256.out b/ippl/test/FFT/SeaborgRes/data/TestD256.out
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/data/makePlot.gpl b/ippl/test/FFT/SeaborgRes/data/makePlot.gpl
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/fftspeed.cpp b/ippl/test/FFT/SeaborgRes/fftspeed.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/SeaborgRes/makePlot.gpl b/ippl/test/FFT/SeaborgRes/makePlot.gpl
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestFFT-1.cpp b/ippl/test/FFT/TestFFT-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestFFT-2.cpp b/ippl/test/FFT/TestFFT-2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestFFT-XT3.cpp b/ippl/test/FFT/TestFFT-XT3.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestFFT.cpp.org b/ippl/test/FFT/TestFFT.cpp.org
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestFFTCos.cpp b/ippl/test/FFT/TestFFTCos.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestFFTSin.cpp b/ippl/test/FFT/TestFFTSin.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/TestRC.cpp b/ippl/test/FFT/TestRC.cpp
index fc1923e10..b1963f596 100644
--- a/ippl/test/FFT/TestRC.cpp
+++ b/ippl/test/FFT/TestRC.cpp
@@ -250,25 +250,25 @@ int main(int argc, char *argv[])
   
   // all parallel layout, standard domain, normal axis order
   FieldLayout<D> layoutPPStan(ndiStandard,allParallel,vnodes);
+  // zeroth axis serial, standard domain, normal axis order
+  FieldLayout<D> layoutSPStan(ndiStandard,serialParallel,vnodes);
   
   // all parallel layout, zeroth axis half-size domain, normal axis order
   FieldLayout<D> layoutPPStan0h(ndiStandard0h,allParallel,vnodes);
-
-
-  FieldLayout<D> layoutSPStan(ndiStandard,serialParallel,vnodes); 
+  // zeroth axis serial, zeroth axis half-size domain, normal axis order
   FieldLayout<D> layoutSPStan0h(ndiStandard0h,serialParallel,vnodes);
-
-
+    
 
   // create test Fields for complex-to-complex FFT
   BareField<dcomplex,D> CFieldPPStan(layoutPPStan);
   
+  BareField<dcomplex,D> CFieldSPStan(layoutSPStan);
+  
   BareField<double,D> diffFieldSPStan(layoutSPStan);
   
   // create test Fields for real-to-complex FFT
   BareField<double,D> RFieldSPStan(layoutSPStan);
   BareField<double,D> RFieldSPStan_save(layoutSPStan);
-
   BareField<dcomplex,D> CFieldSPStan0h(layoutSPStan0h);
   
   // Rather more complete test functions (sine or cosine mode):
@@ -280,7 +280,7 @@ int main(int argc, char *argv[])
   yfact = 2.0*twopi/(ngrid[1]);
   zfact = 2.0*twopi/(ngrid[2]);
   kx = 1.0; ky = 2.0; kz = 32.0; // wavenumbers
-  msg << "Init 1  fields done ..." << endl;
+
   CFieldPPStan[ndiStandard[0]][ndiStandard[1]][ndiStandard[2]] = 
     sfact * ( sin( (ndiStandard[0]+1) * kx * xfact +
 		   ndiStandard[1]    * ky * yfact +
@@ -295,7 +295,7 @@ int main(int argc, char *argv[])
 		  ndiStandard[1]    * ky * yfact -
 		  ndiStandard[2]    * kz * zfact ) );
   // RC FFT tests  
-  msg << "Init 2  fields done ..." << endl;
+
   RFieldSPStan = real(CFieldPPStan);
 
   CFieldSPStan0h = dcomplex(0.0,0.0);
@@ -321,7 +321,7 @@ int main(int argc, char *argv[])
   IpplMemoryUsage::IpplMemory_p memory = IpplMemoryUsage::getInstance();
   memory->sample();
   writeMemoryData(os_memData, pwi, 0);
-  msg << "Setup FFT  done ..." << endl;
+
   for (unsigned i=0; i<nLoop; i++) {
     RFieldSPStan_save = RFieldSPStan;
 
@@ -351,3 +351,50 @@ int main(int argc, char *argv[])
 }
 
 
+
+
+  /* cout << "TYPEINFO:" << endl;
+  cout << typeid(RFieldSPStan[0][0][0]).name() << endl;
+  cout << typeid(CFieldPPStan[0][0][0]).name() << endl;
+  */
+  
+  /*
+  for(int x = ndiStandard[0].first(); x <= ndiStandard[0].last(); x++) {
+    for(int y = ndiStandard[1].first(); y <= ndiStandard[1].last(); y++) {
+      for(int z = ndiStandard[2].first(); z <= ndiStandard[2].last(); z++) {
+	RFieldSPStan[x][y][z] = real(CFieldPPStan[x][y][z].get());
+      }
+    }
+  }
+  */
+
+
+  //  Inform fo2(NULL,"FFTrealField.dat",Inform::OVERWRITE);
+  
+
+
+    //double total_time = 0;
+    //total_time+= timer.cpu_time();
+    /*
+      Inform fo2(NULL,"FFTrealResult.dat",Inform::OVERWRITE);
+      for(int x = ndiStandard[0].first(); x <= ndiStandard[0].last(); x++) {
+      for(int y = ndiStandard[1].first(); y <= ndiStandard[1].last(); y++) {
+      for(int z = ndiStandard[2].first(); z <= ndiStandard[2].last(); z++) {
+      fo2 << x << " " << y << " " << z << " " <<  RFieldSPStan[x][y][z].get() << endl;
+      }
+      }
+      }
+    */
+
+
+/***************************************************************************
+ * $RCSfile: TestRC.cpp,v $   $Author: adelmann $
+ * $Revision: 1.1.1.1 $   $Date: 2003/01/23 07:40:36 $
+ ***************************************************************************/
+
+/***************************************************************************
+ * $RCSfile: addheaderfooter,v $   $Author: adelmann $
+ * $Revision: 1.1.1.1 $   $Date: 2003/01/23 07:40:17 $
+ * IPPL_VERSION_ID: $Id: addheaderfooter,v 1.1.1.1 2003/01/23 07:40:17 adelmann Exp $ 
+ ***************************************************************************/
+
diff --git a/ippl/test/FFT/TestRCMIC.cpp b/ippl/test/FFT/TestRCMIC.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/fftspeed.cpp b/ippl/test/FFT/fftspeed.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/nodefile b/ippl/test/FFT/nodefile
old mode 100755
new mode 100644
diff --git a/ippl/test/FFT/run b/ippl/test/FFT/run
old mode 100755
new mode 100644
diff --git a/ippl/test/Hal/CMakeLists.txt b/ippl/test/Hal/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/Hal/Makefile b/ippl/test/Hal/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/Hal/yfld_q1.cpp b/ippl/test/Hal/yfld_q1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/Hal/yfld_q1_err.txt b/ippl/test/Hal/yfld_q1_err.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/Hal/yfld_q2.cpp b/ippl/test/Hal/yfld_q2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/Makefile.def b/ippl/test/Makefile.def
old mode 100755
new mode 100644
diff --git a/ippl/test/PwrSpec/CMakeLists.txt b/ippl/test/PwrSpec/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/PwrSpec/Makefile b/ippl/test/PwrSpec/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/PwrSpec/PwrSpec.cpp b/ippl/test/PwrSpec/PwrSpec.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/PwrSpec/PwrSpec.h b/ippl/test/PwrSpec/PwrSpec.h
old mode 100755
new mode 100644
diff --git a/ippl/test/PwrSpec/testPwrSpec.cpp b/ippl/test/PwrSpec/testPwrSpec.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/adaTests/CMakeLists.txt b/ippl/test/adaTests/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/adaTests/Makefile b/ippl/test/adaTests/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/adaTests/TestDot1.cpp b/ippl/test/adaTests/TestDot1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/adaTests/TestDot2.cpp b/ippl/test/adaTests/TestDot2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/.depend b/ippl/test/hdf5/.depend
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/CMakeLists.txt b/ippl/test/hdf5/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/Makefile b/ippl/test/hdf5/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/hdf5para-1.inp b/ippl/test/hdf5/hdf5para-1.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/hdf5para-2.inp b/ippl/test/hdf5/hdf5para-2.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/hdf5read-1.cpp b/ippl/test/hdf5/hdf5read-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/hdf5write-1.cpp b/ippl/test/hdf5/hdf5write-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/hdf5/testHdf5-1.cpp b/ippl/test/hdf5/testHdf5-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/nok/CMakeLists.txt b/ippl/test/nok/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/nok/t3.cpp b/ippl/test/nok/t3.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/2ddens.cpp b/ippl/test/parallel/2ddens.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/CMakeLists.txt b/ippl/test/parallel/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/Makefile b/ippl/test/parallel/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/dualmpi.cpp b/ippl/test/parallel/dualmpi.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/reduce-1.cpp b/ippl/test/parallel/reduce-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/reduce-2.cpp b/ippl/test/parallel/reduce-2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/parallel/volley.cpp b/ippl/test/parallel/volley.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/1dperiodic.cpp b/ippl/test/particle/1dperiodic.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/CMakeLists.txt b/ippl/test/particle/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/CacheTest.cpp b/ippl/test/particle/CacheTest.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/ChargedParticleFactory.hpp b/ippl/test/particle/ChargedParticleFactory.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/DiscParticle.cpp b/ippl/test/particle/DiscParticle.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/FFTFieldSolver.cpp b/ippl/test/particle/FFTFieldSolver.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/FieldCompare.cpp b/ippl/test/particle/FieldCompare.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/Makefile b/ippl/test/particle/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/PIC2d.cpp b/ippl/test/particle/PIC2d.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/PIC3d.cpp b/ippl/test/particle/PIC3d.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/PIC3dBCo-p.cpp b/ippl/test/particle/PIC3dBCo-p.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/PIC3dBCo-p.cpp.nok b/ippl/test/particle/PIC3dBCo-p.cpp.nok
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/PairTest.cpp b/ippl/test/particle/PairTest.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/VTKFieldWriterParallel.hpp b/ippl/test/particle/VTKFieldWriterParallel.hpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/chsr-1.cpp b/ippl/test/particle/chsr-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/chsr-2.cpp b/ippl/test/particle/chsr-2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/cref.cpp b/ippl/test/particle/cref.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/interpolate.cpp b/ippl/test/particle/interpolate.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/loadbalance.cpp b/ippl/test/particle/loadbalance.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/neighNodeTest1.cpp b/ippl/test/particle/neighNodeTest1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/nodefile b/ippl/test/particle/nodefile
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3d.cpp b/ippl/test/particle/p3m3d.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dHeating.cpp b/ippl/test/particle/p3m3dHeating.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dMicrobunching.cpp b/ippl/test/particle/p3m3dMicrobunching.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dRegressionTests.cpp b/ippl/test/particle/p3m3dRegressionTests.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dTwoStream.cpp b/ippl/test/particle/p3m3dTwoStream.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dTwoStreamParallel.cpp b/ippl/test/particle/p3m3dTwoStreamParallel.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dplot.p b/ippl/test/particle/p3m3dplot.p
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/p3m3dreadme.txt b/ippl/test/particle/p3m3dreadme.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/parexp.cpp b/ippl/test/particle/parexp.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/pbconds.cpp b/ippl/test/particle/pbconds.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/pbconds3D.cpp b/ippl/test/particle/pbconds3D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/pbconds_vis.cpp b/ippl/test/particle/pbconds_vis.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/pdbtest.cpp b/ippl/test/particle/pdbtest.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/run b/ippl/test/particle/run
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/salman-1.cpp b/ippl/test/particle/salman-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/spatial.cpp b/ippl/test/particle/spatial.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/spatial.cpp.org b/ippl/test/particle/spatial.cpp.org
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/test-scatter-1.cpp b/ippl/test/particle/test-scatter-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/test-update-1.cpp b/ippl/test/particle/test-update-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/test-update-1.sge b/ippl/test/particle/test-update-1.sge
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/typtest.cpp b/ippl/test/particle/typtest.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/uniform.cpp b/ippl/test/particle/uniform.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/particle/vlasovBB1D.cpp b/ippl/test/particle/vlasovBB1D.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/poissonsolvers/CMakeLists.txt b/ippl/test/poissonsolvers/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/poissonsolvers/Makefile b/ippl/test/poissonsolvers/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/poissonsolvers/ReadMe b/ippl/test/poissonsolvers/ReadMe
old mode 100755
new mode 100644
diff --git a/ippl/test/poissonsolvers/data1.dat b/ippl/test/poissonsolvers/data1.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/poissonsolvers/femmgTest.cpp b/ippl/test/poissonsolvers/femmgTest.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/.depend b/ippl/test/simple-new/.depend
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/CMakeLists.txt b/ippl/test/simple-new/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/Makefile b/ippl/test/simple-new/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/id-test1.cpp b/ippl/test/simple-new/id-test1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/memcheck-1.cpp b/ippl/test/simple-new/memcheck-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t1.cpp b/ippl/test/simple-new/t1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t2.cpp b/ippl/test/simple-new/t2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t3.cpp b/ippl/test/simple-new/t3.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t4.cpp b/ippl/test/simple-new/t4.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t5.cpp b/ippl/test/simple-new/t5.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t6.cpp b/ippl/test/simple-new/t6.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t7.cpp b/ippl/test/simple-new/t7.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple-new/t8.cpp b/ippl/test/simple-new/t8.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/.depend b/ippl/test/simple/.depend
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/2ddiffusion-1.cpp b/ippl/test/simple/2ddiffusion-1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/CMakeLists.txt b/ippl/test/simple/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/Clock.h b/ippl/test/simple/Clock.h
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/FVecOps.cpp b/ippl/test/simple/FVecOps.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/Makefile b/ippl/test/simple/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/ScalarAdvection.cpp b/ippl/test/simple/ScalarAdvection.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/Slice.cpp b/ippl/test/simple/Slice.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestAverageVC_CV.cpp b/ippl/test/simple/TestAverageVC_CV.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestBC.cpp b/ippl/test/simple/TestBC.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestCartesianCentering.cpp b/ippl/test/simple/TestCartesianCentering.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestEureka.cpp b/ippl/test/simple/TestEureka.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestFieldDebug.cpp b/ippl/test/simple/TestFieldDebug.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestFieldDebug2.cpp b/ippl/test/simple/TestFieldDebug2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestParticleDebug.cpp b/ippl/test/simple/TestParticleDebug.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestParticleDebugParallel.cpp b/ippl/test/simple/TestParticleDebugParallel.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestPeriodicBC.cpp b/ippl/test/simple/TestPeriodicBC.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestPeriodicBC.txt b/ippl/test/simple/TestPeriodicBC.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestPeriodicBCGuardCell1.txt b/ippl/test/simple/TestPeriodicBCGuardCell1.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestPeriodicBCGuardCell2.txt b/ippl/test/simple/TestPeriodicBCGuardCell2.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestScalarIndexing.cpp b/ippl/test/simple/TestScalarIndexing.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/TestTensorUnaryOps.cpp b/ippl/test/simple/TestTensorUnaryOps.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/balance.cpp b/ippl/test/simple/balance.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/bc.cpp b/ippl/test/simple/bc.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/bc2.cpp b/ippl/test/simple/bc2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/bc3.cpp b/ippl/test/simple/bc3.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/bc_convert.cpp b/ippl/test/simple/bc_convert.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/bool.cpp b/ippl/test/simple/bool.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/component.cpp b/ippl/test/simple/component.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/compressed.cpp b/ippl/test/simple/compressed.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/conejo_balance.cpp b/ippl/test/simple/conejo_balance.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/ctoc.cpp b/ippl/test/simple/ctoc.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/cv.cpp b/ippl/test/simple/cv.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof2d_a.cpp b/ippl/test/simple/doof2d_a.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof2d_complex.cpp b/ippl/test/simple/doof2d_complex.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof2d_file.cpp b/ippl/test/simple/doof2d_file.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof2d_simple.cpp b/ippl/test/simple/doof2d_simple.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof2d_vis.cpp b/ippl/test/simple/doof2d_vis.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof3d_file.cpp b/ippl/test/simple/doof3d_file.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/doof3d_vis.cpp b/ippl/test/simple/doof3d_vis.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/fermi-dirac-field.cpp b/ippl/test/simple/fermi-dirac-field.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/fivefields.cpp b/ippl/test/simple/fivefields.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/float.cpp b/ippl/test/simple/float.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/flyercode.cpp b/ippl/test/simple/flyercode.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/funcface.cpp b/ippl/test/simple/funcface.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/gcprint.cpp b/ippl/test/simple/gcprint.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/itercompress.cpp b/ippl/test/simple/itercompress.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/left.cpp b/ippl/test/simple/left.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/minmax.cpp b/ippl/test/simple/minmax.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/patches.cpp b/ippl/test/simple/patches.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/reduce.cpp b/ippl/test/simple/reduce.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/reduceloc.cpp b/ippl/test/simple/reduceloc.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/repartition.cpp b/ippl/test/simple/repartition.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/repartition.cpp.org b/ippl/test/simple/repartition.cpp.org
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/send b/ippl/test/simple/send
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/single.cpp b/ippl/test/simple/single.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/slices.cpp b/ippl/test/simple/slices.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/soffset.cpp b/ippl/test/simple/soffset.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/subdivide.cpp b/ippl/test/simple/subdivide.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/subreadtest.cpp b/ippl/test/simple/subreadtest.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t.cpp b/ippl/test/simple/t.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t1.cpp b/ippl/test/simple/t1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t2.cpp b/ippl/test/simple/t2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t3.cpp b/ippl/test/simple/t3.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t4.cpp b/ippl/test/simple/t4.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t5.cpp b/ippl/test/simple/t5.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t6.cpp b/ippl/test/simple/t6.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t7.cpp b/ippl/test/simple/t7.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/t8.cpp b/ippl/test/simple/t8.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/transpose.cpp b/ippl/test/simple/transpose.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/tv.cpp b/ippl/test/simple/tv.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/tz.cpp b/ippl/test/simple/tz.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/simple/vc.cpp b/ippl/test/simple/vc.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/CMakeLists.txt b/ippl/test/sindex/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/Makefile b/ippl/test/sindex/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/TestSIndex.cpp b/ippl/test/sindex/TestSIndex.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/compsindex.cpp b/ippl/test/sindex/compsindex.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/sindex.cpp b/ippl/test/sindex/sindex.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/subfield.cpp b/ippl/test/sindex/subfield.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/sindex/vertcell.cpp b/ippl/test/sindex/vertcell.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/CMakeLists.txt b/ippl/test/speed/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/Makefile b/ippl/test/speed/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/diskfield.cpp b/ippl/test/speed/diskfield.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/gcspeed.cpp b/ippl/test/speed/gcspeed.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/make.out b/ippl/test/speed/make.out
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/particle_simple.cpp b/ippl/test/speed/particle_simple.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/reducespeed.cpp b/ippl/test/speed/reducespeed.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/speed1.cpp b/ippl/test/speed/speed1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/stencil1.cpp b/ippl/test/speed/stencil1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/speed/stencil_c.c b/ippl/test/speed/stencil_c.c
old mode 100755
new mode 100644
diff --git a/ippl/test/toyfdtf/CMakeLists.txt b/ippl/test/toyfdtf/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/toyfdtf/Makefile b/ippl/test/toyfdtf/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.cpp b/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h b/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h
old mode 100755
new mode 100644
diff --git a/ippl/test/toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp b/ippl/test/toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/toyfdtf/ipplToyFDTD2.cpp b/ippl/test/toyfdtf/ipplToyFDTD2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/CMakeLists.txt b/ippl/test/ttrack/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/Doxyfile b/ippl/test/ttrack/Doxyfile
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.cpp b/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.hh b/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTConfigure/GTConfigure.hh b/ippl/test/ttrack/GTConfigure/GTConfigure.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTDistribution/GTDistribution.cc b/ippl/test/ttrack/GTDistribution/GTDistribution.cc
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTDistribution/GTDistribution.hh b/ippl/test/ttrack/GTDistribution/GTDistribution.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTDistribution/hammersley.cpp b/ippl/test/ttrack/GTDistribution/hammersley.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTDistribution/hammersley.h b/ippl/test/ttrack/GTDistribution/hammersley.h
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTDistribution/ranlib.cc b/ippl/test/ttrack/GTDistribution/ranlib.cc
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTDistribution/ranlib.h b/ippl/test/ttrack/GTDistribution/ranlib.h
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/ACG.cpp b/ippl/test/ttrack/GTElements/ACG.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/ACG.h b/ippl/test/ttrack/GTElements/ACG.h
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/Elements.hh b/ippl/test/ttrack/GTElements/Elements.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTElemData.hh b/ippl/test/ttrack/GTElements/GTElemData.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTGenElement.hh b/ippl/test/ttrack/GTElements/GTGenElement.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTIBS.hh b/ippl/test/ttrack/GTElements/GTIBS.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTMultipoleMap.hh b/ippl/test/ttrack/GTElements/GTMultipoleMap.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTRFCavityMap.hh b/ippl/test/ttrack/GTElements/GTRFCavityMap.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTRadiation.hh b/ippl/test/ttrack/GTElements/GTRadiation.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/GTRecquadMap.hh b/ippl/test/ttrack/GTElements/GTRecquadMap.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/IBSProcess.cpp b/ippl/test/ttrack/GTElements/IBSProcess.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/IBSProcess.h b/ippl/test/ttrack/GTElements/IBSProcess.h
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/Merlin/PhotonSpectrumGen.cpp b/ippl/test/ttrack/GTElements/Merlin/PhotonSpectrumGen.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.cpp b/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.h b/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.h
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTUtilities/GTConst.hh b/ippl/test/ttrack/GTUtilities/GTConst.hh
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTUtilities/GTPhysics.cc b/ippl/test/ttrack/GTUtilities/GTPhysics.cc
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/GTUtilities/GTPhysics.h b/ippl/test/ttrack/GTUtilities/GTPhysics.h
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/Makefile b/ippl/test/ttrack/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/Makefile.def b/ippl/test/ttrack/Makefile.def
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/README b/ippl/test/ttrack/README
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/aur-1.dat b/ippl/test/ttrack/aur-1.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/dsmc.cpp b/ippl/test/ttrack/dsmc.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/direct.tex b/ippl/test/ttrack/report/direct.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/divrad.png b/ippl/test/ttrack/report/divrad.png
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/feynman.png b/ippl/test/ttrack/report/feynman.png
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/future.tex b/ippl/test/ttrack/report/future.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/implementation.tex b/ippl/test/ttrack/report/implementation.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/introduction.tex b/ippl/test/ttrack/report/introduction.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/literature.tex b/ippl/test/ttrack/report/literature.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/longtermbehavior.png b/ippl/test/ttrack/report/longtermbehavior.png
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/aurlong.pdf b/ippl/test/ttrack/report/presentation/aurlong.pdf
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/inter.pdf b/ippl/test/ttrack/report/presentation/inter.pdf
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/lowemi.dat b/ippl/test/ttrack/report/presentation/lowemi.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/presentation.tex b/ippl/test/ttrack/report/presentation/presentation.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/scaling.dat b/ippl/test/ttrack/report/presentation/scaling.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/sls-acceptancevslifetime.dat b/ippl/test/ttrack/report/presentation/sls-acceptancevslifetime.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/presentation/sls-longterm.pdf b/ippl/test/ttrack/report/presentation/sls-longterm.pdf
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/radius.png b/ippl/test/ttrack/report/radius.png
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/radius2.png b/ippl/test/ttrack/report/radius2.png
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/report.tex b/ippl/test/ttrack/report/report.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/results.tex b/ippl/test/ttrack/report/results.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/simulation.tex b/ippl/test/ttrack/report/simulation.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/report/theory.tex b/ippl/test/ttrack/report/theory.tex
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/sls-1.dat b/ippl/test/ttrack/sls-1.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/ttrack/touscheklifetime.nb b/ippl/test/ttrack/touscheklifetime.nb
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/.depend b/ippl/test/twostream-1/.depend
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/CMakeLists.txt b/ippl/test/twostream-1/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Makefile b/ippl/test/twostream-1/Makefile
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.h b/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.h b/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.cpp b/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.h b/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Flagger.cpp b/ippl/test/twostream-1/Utility/Algorithms/Flagger.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Flagger.h b/ippl/test/twostream-1/Utility/Algorithms/Flagger.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.h b/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.h b/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.cpp b/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.h b/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Mapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/Mapper.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Mapper.h b/ippl/test/twostream-1/Utility/Algorithms/Mapper.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.h b/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartBunch.cpp b/ippl/test/twostream-1/Utility/Algorithms/PartBunch.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartBunch.h b/ippl/test/twostream-1/Utility/Algorithms/PartBunch.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartData.cpp b/ippl/test/twostream-1/Utility/Algorithms/PartData.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartData.h b/ippl/test/twostream-1/Utility/Algorithms/PartData.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Particle.cpp b/ippl/test/twostream-1/Utility/Algorithms/Particle.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Particle.h b/ippl/test/twostream-1/Utility/Algorithms/Particle.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Surveyor.cpp b/ippl/test/twostream-1/Utility/Algorithms/Surveyor.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Surveyor.h b/ippl/test/twostream-1/Utility/Algorithms/Surveyor.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.h b/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.h b/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.cpp b/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.h b/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Tracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/Tracker.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/Tracker.h b/ippl/test/twostream-1/Utility/Algorithms/Tracker.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Algorithms/rbendmap.h b/ippl/test/twostream-1/Utility/Algorithms/rbendmap.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/MemoryManagement/OwnPtr.h b/ippl/test/twostream-1/Utility/MemoryManagement/OwnPtr.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/MemoryManagement/Pointer.h b/ippl/test/twostream-1/Utility/MemoryManagement/Pointer.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/MemoryManagement/RCObject.h b/ippl/test/twostream-1/Utility/MemoryManagement/RCObject.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/AbsFileStream.cpp b/ippl/test/twostream-1/Utility/Parser/AbsFileStream.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/AbsFileStream.h b/ippl/test/twostream-1/Utility/Parser/AbsFileStream.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/ClassicParser.cpp b/ippl/test/twostream-1/Utility/Parser/ClassicParser.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/ClassicParser.h b/ippl/test/twostream-1/Utility/Parser/ClassicParser.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/FileStream.cpp b/ippl/test/twostream-1/Utility/Parser/FileStream.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/FileStream.h b/ippl/test/twostream-1/Utility/Parser/FileStream.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/Parser.cpp b/ippl/test/twostream-1/Utility/Parser/Parser.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/Parser.h b/ippl/test/twostream-1/Utility/Parser/Parser.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/SimpleStatement.cpp b/ippl/test/twostream-1/Utility/Parser/SimpleStatement.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/SimpleStatement.h b/ippl/test/twostream-1/Utility/Parser/SimpleStatement.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/Statement.cpp b/ippl/test/twostream-1/Utility/Parser/Statement.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/Statement.h b/ippl/test/twostream-1/Utility/Parser/Statement.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/StringStream.cpp b/ippl/test/twostream-1/Utility/Parser/StringStream.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/StringStream.h b/ippl/test/twostream-1/Utility/Parser/StringStream.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/TerminalStream.cpp b/ippl/test/twostream-1/Utility/Parser/TerminalStream.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/TerminalStream.h b/ippl/test/twostream-1/Utility/Parser/TerminalStream.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/Token.cpp b/ippl/test/twostream-1/Utility/Parser/Token.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/Token.h b/ippl/test/twostream-1/Utility/Parser/Token.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/TokenStream.cpp b/ippl/test/twostream-1/Utility/Parser/TokenStream.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Parser/TokenStream.h b/ippl/test/twostream-1/Utility/Parser/TokenStream.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Physics/Physics.cpp b/ippl/test/twostream-1/Utility/Physics/Physics.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Physics/Physics.h b/ippl/test/twostream-1/Utility/Physics/Physics.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.cpp b/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.h b/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/AttributeError.cpp b/ippl/test/twostream-1/Utility/Utilities/AttributeError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/AttributeError.h b/ippl/test/twostream-1/Utility/Utilities/AttributeError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ClassicException.cpp b/ippl/test/twostream-1/Utility/Utilities/ClassicException.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ClassicException.h b/ippl/test/twostream-1/Utility/Utilities/ClassicException.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.cpp b/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.h b/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.cpp b/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.h b/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/DivideError.cpp b/ippl/test/twostream-1/Utility/Utilities/DivideError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/DivideError.h b/ippl/test/twostream-1/Utility/Utilities/DivideError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/DomainError.cpp b/ippl/test/twostream-1/Utility/Utilities/DomainError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/DomainError.h b/ippl/test/twostream-1/Utility/Utilities/DomainError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.cpp b/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.h b/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/FormatError.cpp b/ippl/test/twostream-1/Utility/Utilities/FormatError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/FormatError.h b/ippl/test/twostream-1/Utility/Utilities/FormatError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/Gauss.cpp b/ippl/test/twostream-1/Utility/Utilities/Gauss.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/Gauss.h b/ippl/test/twostream-1/Utility/Utilities/Gauss.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/InverseGauss.cpp b/ippl/test/twostream-1/Utility/Utilities/InverseGauss.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/InverseGauss.h b/ippl/test/twostream-1/Utility/Utilities/InverseGauss.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/LogicalError.cpp b/ippl/test/twostream-1/Utility/Utilities/LogicalError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/LogicalError.h b/ippl/test/twostream-1/Utility/Utilities/LogicalError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/NormalFormError.cpp b/ippl/test/twostream-1/Utility/Utilities/NormalFormError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/NormalFormError.h b/ippl/test/twostream-1/Utility/Utilities/NormalFormError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/OverflowError.cpp b/ippl/test/twostream-1/Utility/Utilities/OverflowError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/OverflowError.h b/ippl/test/twostream-1/Utility/Utilities/OverflowError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ParseError.cpp b/ippl/test/twostream-1/Utility/Utilities/ParseError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/ParseError.h b/ippl/test/twostream-1/Utility/Utilities/ParseError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/Random.cpp b/ippl/test/twostream-1/Utility/Utilities/Random.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/Random.h b/ippl/test/twostream-1/Utility/Utilities/Random.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/RangeError.cpp b/ippl/test/twostream-1/Utility/Utilities/RangeError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/RangeError.h b/ippl/test/twostream-1/Utility/Utilities/RangeError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.cpp b/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.h b/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/SizeError.cpp b/ippl/test/twostream-1/Utility/Utilities/SizeError.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/SizeError.h b/ippl/test/twostream-1/Utility/Utilities/SizeError.h
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/User0.cpp b/ippl/test/twostream-1/Utility/Utilities/User0.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/User1.cpp b/ippl/test/twostream-1/Utility/Utilities/User1.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/Utility/Utilities/User2.cpp b/ippl/test/twostream-1/Utility/Utilities/User2.cpp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/anal.gpl b/ippl/test/twostream-1/anal.gpl
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/anal.kumac b/ippl/test/twostream-1/anal.kumac
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/analtest.gpl b/ippl/test/twostream-1/analtest.gpl
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/constfoc-1.inp b/ippl/test/twostream-1/constfoc-1.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/data1.dat b/ippl/test/twostream-1/data1.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/data2.dat b/ippl/test/twostream-1/data2.dat
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/driftsc-1.inp b/ippl/test/twostream-1/driftsc-1.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/driftsc-2.inp b/ippl/test/twostream-1/driftsc-2.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/test-1.inp b/ippl/test/twostream-1/test-1.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/test-2.inp b/ippl/test/twostream-1/test-2.inp
old mode 100755
new mode 100644
diff --git a/ippl/test/twostream-1/twostream-2.cpp b/ippl/test/twostream-1/twostream-2.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/.gitignore b/opt-pilot/.gitignore
old mode 100755
new mode 100644
diff --git a/opt-pilot/CMakeLists.txt b/opt-pilot/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/CommSplitter.h b/opt-pilot/Comm/CommSplitter.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/MasterGraph/NDimMesh.h b/opt-pilot/Comm/MasterGraph/NDimMesh.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/MasterGraph/NoMasterGraph.h b/opt-pilot/Comm/MasterGraph/NoMasterGraph.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/MasterGraph/SocialNetworkGraph.h b/opt-pilot/Comm/MasterGraph/SocialNetworkGraph.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/MasterNode.h b/opt-pilot/Comm/MasterNode.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Splitter/GeometricStrategy.h b/opt-pilot/Comm/Splitter/GeometricStrategy.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Splitter/ManyMasterSplit.h b/opt-pilot/Comm/Splitter/ManyMasterSplit.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Splitter/RandomStrategy.h b/opt-pilot/Comm/Splitter/RandomStrategy.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Splitter/ReadSplitFromFile.h b/opt-pilot/Comm/Splitter/ReadSplitFromFile.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Splitter/SplitStrategy.h b/opt-pilot/Comm/Splitter/SplitStrategy.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Topology/CommTopology.h b/opt-pilot/Comm/Topology/CommTopology.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/Topology/NoCommTopology.h b/opt-pilot/Comm/Topology/NoCommTopology.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Comm/types.h b/opt-pilot/Comm/types.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Doxyfile b/opt-pilot/Doxyfile
old mode 100755
new mode 100644
diff --git a/opt-pilot/Drivers/CMakeLists.txt b/opt-pilot/Drivers/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Drivers/pisa-opal/CMakeLists.txt b/opt-pilot/Drivers/pisa-opal/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Drivers/pisa-opal/pisa-opal.cpp b/opt-pilot/Drivers/pisa-opal/pisa-opal.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Drivers/pisa-standalone/CMakeLists.txt b/opt-pilot/Drivers/pisa-standalone/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Drivers/pisa-standalone/pisa-standalone.cpp b/opt-pilot/Drivers/pisa-standalone/pisa-standalone.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/CMakeLists.txt b/opt-pilot/Expression/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Expression.h b/opt-pilot/Expression/Expression.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/FromFile.cpp b/opt-pilot/Expression/FromFile.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/FromFile.h b/opt-pilot/Expression/FromFile.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/GlobalFunctions.h b/opt-pilot/Expression/GlobalFunctions.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/annotation.hpp b/opt-pilot/Expression/Parser/annotation.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/ast.hpp b/opt-pilot/Expression/Parser/ast.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/error_handler.hpp b/opt-pilot/Expression/Parser/error_handler.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/evaluator.cpp b/opt-pilot/Expression/Parser/evaluator.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/evaluator.hpp b/opt-pilot/Expression/Parser/evaluator.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/expression.cpp b/opt-pilot/Expression/Parser/expression.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/expression.hpp b/opt-pilot/Expression/Parser/expression.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/expression_def.hpp b/opt-pilot/Expression/Parser/expression_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/function.hpp b/opt-pilot/Expression/Parser/function.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/requirements.hpp b/opt-pilot/Expression/Parser/requirements.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/Parser/skipper.hpp b/opt-pilot/Expression/Parser/skipper.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/ProbeVariable.h b/opt-pilot/Expression/ProbeVariable.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/PythonExpr.h b/opt-pilot/Expression/PythonExpr.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/RadialPeak.cpp b/opt-pilot/Expression/RadialPeak.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/RadialPeak.h b/opt-pilot/Expression/RadialPeak.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/SDDSVariable.h b/opt-pilot/Expression/SDDSVariable.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/SumErrSq.cpp b/opt-pilot/Expression/SumErrSq.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/SumErrSq.h b/opt-pilot/Expression/SumErrSq.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/SumErrSqRadialPeak.cpp b/opt-pilot/Expression/SumErrSqRadialPeak.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Expression/SumErrSqRadialPeak.h b/opt-pilot/Expression/SumErrSqRadialPeak.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/BlendCrossover.h b/opt-pilot/Optimizer/EA/BlendCrossover.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/FixedPisaNsga2.h b/opt-pilot/Optimizer/EA/FixedPisaNsga2.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc b/opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/IndependentBitMutation.h b/opt-pilot/Optimizer/EA/IndependentBitMutation.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/Individual.h b/opt-pilot/Optimizer/EA/Individual.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/NaiveOnePointCrossover.h b/opt-pilot/Optimizer/EA/NaiveOnePointCrossover.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/NaiveUniformCrossover.h b/opt-pilot/Optimizer/EA/NaiveUniformCrossover.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/OneBitMutation.h b/opt-pilot/Optimizer/EA/OneBitMutation.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/Population.h b/opt-pilot/Optimizer/EA/Population.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/SimulatedBinaryCrossover.h b/opt-pilot/Optimizer/EA/SimulatedBinaryCrossover.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/EA/Variator.h b/opt-pilot/Optimizer/EA/Variator.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Optimizer/Optimizer.h b/opt-pilot/Optimizer/Optimizer.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Pilot/Pilot.h b/opt-pilot/Pilot/Pilot.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Pilot/Poller.h b/opt-pilot/Pilot/Poller.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Pilot/Worker.h b/opt-pilot/Pilot/Worker.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Problems/FON.h b/opt-pilot/Problems/FON.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Problems/ProblemInterface.h b/opt-pilot/Problems/ProblemInterface.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/README.mkd b/opt-pilot/README.mkd
old mode 100755
new mode 100644
diff --git a/opt-pilot/Simulation/FunctionEvaluator.cpp b/opt-pilot/Simulation/FunctionEvaluator.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Simulation/FunctionEvaluator.h b/opt-pilot/Simulation/FunctionEvaluator.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Simulation/GenerateOpalSimulation.h b/opt-pilot/Simulation/GenerateOpalSimulation.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Simulation/Simulation.h b/opt-pilot/Simulation/Simulation.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/CMakeLists.txt b/opt-pilot/Tests/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/CmdArgumentsTest.cpp b/opt-pilot/Tests/CmdArgumentsTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/ExpressionTest.cpp b/opt-pilot/Tests/ExpressionTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/FromFileExpressionTest.cpp b/opt-pilot/Tests/FromFileExpressionTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/HashNameGeneratorTest.cpp b/opt-pilot/Tests/HashNameGeneratorTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/Homotopy/Problem.in b/opt-pilot/Tests/Homotopy/Problem.in
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/IndividualTest.cpp b/opt-pilot/Tests/IndividualTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/MPIHelperTest.cpp b/opt-pilot/Tests/MPIHelperTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/ManagedIDsTest.cpp b/opt-pilot/Tests/ManagedIDsTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/Opal/FiPha3Opt1.data b/opt-pilot/Tests/Opal/FiPha3Opt1.data
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/Opal/FiPha3Opt1.tmpl b/opt-pilot/Tests/Opal/FiPha3Opt1.tmpl
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/Opal/fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat b/opt-pilot/Tests/Opal/fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/Opal/fieldmaps/NEW_SINGLE_SOL_NOFRINGE_OPAL.dat b/opt-pilot/Tests/Opal/fieldmaps/NEW_SINGLE_SOL_NOFRINGE_OPAL.dat
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/Opal/nsga2/nsga2_param.txt b/opt-pilot/Tests/Opal/nsga2/nsga2_param.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/OpalInputFileParserTest.cpp b/opt-pilot/Tests/OpalInputFileParserTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/PisaStandAlone/Problem.in b/opt-pilot/Tests/PisaStandAlone/Problem.in
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/PisaStandAlone/nsga2/nsga2_param.txt b/opt-pilot/Tests/PisaStandAlone/nsga2/nsga2_param.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/PopulationTest.cpp b/opt-pilot/Tests/PopulationTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/PythonExprTest.cpp b/opt-pilot/Tests/PythonExprTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/SDDSParserTest.cpp b/opt-pilot/Tests/SDDSParserTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/SumErrSqExpressionTest.cpp b/opt-pilot/Tests/SumErrSqExpressionTest.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/generatesim.cpp b/opt-pilot/Tests/generatesim.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/gentest.data b/opt-pilot/Tests/gentest.data
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/gentest.tmpl b/opt-pilot/Tests/gentest.tmpl
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/resources/fromfile_test.dat b/opt-pilot/Tests/resources/fromfile_test.dat
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/resources/fromfile_test2.dat b/opt-pilot/Tests/resources/fromfile_test2.dat
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/resources/measurement_test.dat b/opt-pilot/Tests/resources/measurement_test.dat
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/resources/test.in b/opt-pilot/Tests/resources/test.in
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/resources/test.py b/opt-pilot/Tests/resources/test.py
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/resources/test.stat b/opt-pilot/Tests/resources/test.stat
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/runsim.cpp b/opt-pilot/Tests/runsim.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Tests/schedsim.cpp b/opt-pilot/Tests/schedsim.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/AsyncSendBuffers.h b/opt-pilot/Util/AsyncSendBuffers.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/CMakeLists.txt b/opt-pilot/Util/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/CmdArguments.cpp b/opt-pilot/Util/CmdArguments.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/CmdArguments.h b/opt-pilot/Util/CmdArguments.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/CommentAnnotatedInputFileParser.cpp b/opt-pilot/Util/CommentAnnotatedInputFileParser.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/CommentAnnotatedInputFileParser.h b/opt-pilot/Util/CommentAnnotatedInputFileParser.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/HashNameGenerator.h b/opt-pilot/Util/HashNameGenerator.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/InputFileParser.h b/opt-pilot/Util/InputFileParser.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/MPIHelper.cpp b/opt-pilot/Util/MPIHelper.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/MPIHelper.h b/opt-pilot/Util/MPIHelper.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/ManagedIDs.h b/opt-pilot/Util/ManagedIDs.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/OpalInputFileParser.h b/opt-pilot/Util/OpalInputFileParser.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/OptPilotException.h b/opt-pilot/Util/OptPilotException.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/PeakReader.cpp b/opt-pilot/Util/PeakReader.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/PeakReader.h b/opt-pilot/Util/PeakReader.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/PlainInputFileParser.h b/opt-pilot/Util/PlainInputFileParser.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/ProbeReader.cpp b/opt-pilot/Util/ProbeReader.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/ProbeReader.h b/opt-pilot/Util/ProbeReader.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser.cpp b/opt-pilot/Util/SDDSParser.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser.h b/opt-pilot/Util/SDDSParser.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/SDDSParserException.h b/opt-pilot/Util/SDDSParser/SDDSParserException.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/array.cpp b/opt-pilot/Util/SDDSParser/array.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/array.hpp b/opt-pilot/Util/SDDSParser/array.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/array_def.hpp b/opt-pilot/Util/SDDSParser/array_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/associate.cpp b/opt-pilot/Util/SDDSParser/associate.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/associate.hpp b/opt-pilot/Util/SDDSParser/associate.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/associate_def.hpp b/opt-pilot/Util/SDDSParser/associate_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/ast.cpp b/opt-pilot/Util/SDDSParser/ast.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/ast.hpp b/opt-pilot/Util/SDDSParser/ast.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/ast_def.hpp b/opt-pilot/Util/SDDSParser/ast_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/column.cpp b/opt-pilot/Util/SDDSParser/column.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/column.hpp b/opt-pilot/Util/SDDSParser/column.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/column_def.hpp b/opt-pilot/Util/SDDSParser/column_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/data.cpp b/opt-pilot/Util/SDDSParser/data.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/data.hpp b/opt-pilot/Util/SDDSParser/data.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/data_def.hpp b/opt-pilot/Util/SDDSParser/data_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/description.cpp b/opt-pilot/Util/SDDSParser/description.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/description.hpp b/opt-pilot/Util/SDDSParser/description.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/description_def.hpp b/opt-pilot/Util/SDDSParser/description_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/error_handler.hpp b/opt-pilot/Util/SDDSParser/error_handler.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/file.cpp b/opt-pilot/Util/SDDSParser/file.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/file.hpp b/opt-pilot/Util/SDDSParser/file.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/file_def.hpp b/opt-pilot/Util/SDDSParser/file_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/include.cpp b/opt-pilot/Util/SDDSParser/include.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/include.hpp b/opt-pilot/Util/SDDSParser/include.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/include_def.hpp b/opt-pilot/Util/SDDSParser/include_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/parameter.cpp b/opt-pilot/Util/SDDSParser/parameter.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/parameter.hpp b/opt-pilot/Util/SDDSParser/parameter.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/parameter_def.hpp b/opt-pilot/Util/SDDSParser/parameter_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/skipper.hpp b/opt-pilot/Util/SDDSParser/skipper.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/version.cpp b/opt-pilot/Util/SDDSParser/version.cpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/version.hpp b/opt-pilot/Util/SDDSParser/version.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSParser/version_def.hpp b/opt-pilot/Util/SDDSParser/version_def.hpp
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/SDDSReader.h b/opt-pilot/Util/SDDSReader.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Statistics.h b/opt-pilot/Util/Statistics.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Trace/CoutSink.h b/opt-pilot/Util/Trace/CoutSink.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Trace/FileSink.h b/opt-pilot/Util/Trace/FileSink.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Trace/MyPid.h b/opt-pilot/Util/Trace/MyPid.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Trace/Timestamp.h b/opt-pilot/Util/Trace/Timestamp.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Trace/Trace.h b/opt-pilot/Util/Trace/Trace.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Trace/TraceComponent.h b/opt-pilot/Util/Trace/TraceComponent.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/Util/Types.h b/opt-pilot/Util/Types.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/config.h.in b/opt-pilot/config.h.in
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/CMakeLists.txt b/opt-pilot/extlib/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/PISA_cfg b/opt-pilot/extlib/nsga2/PISA_cfg
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/nsga2.c b/opt-pilot/extlib/nsga2/nsga2.c
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/nsga2.h b/opt-pilot/extlib/nsga2/nsga2.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/nsga2_documentation.txt b/opt-pilot/extlib/nsga2/nsga2_documentation.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/nsga2_functions.c b/opt-pilot/extlib/nsga2/nsga2_functions.c
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/nsga2_io.c b/opt-pilot/extlib/nsga2/nsga2_io.c
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/nsga2/nsga2_param.txt b/opt-pilot/extlib/nsga2/nsga2_param.txt
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT b/opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/wfgHypervolume/LICENSE b/opt-pilot/extlib/wfgHypervolume/LICENSE
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/wfgHypervolume/README.TXT b/opt-pilot/extlib/wfgHypervolume/README.TXT
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/wfgHypervolume/avl.h b/opt-pilot/extlib/wfgHypervolume/avl.h
old mode 100755
new mode 100644
diff --git a/opt-pilot/extlib/wfgHypervolume/wfg.h b/opt-pilot/extlib/wfgHypervolume/wfg.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Action.cpp b/src/AbstractObjects/Action.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Action.h b/src/AbstractObjects/Action.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Attribute.cpp b/src/AbstractObjects/Attribute.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Attribute.h b/src/AbstractObjects/Attribute.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/AttributeBase.cpp b/src/AbstractObjects/AttributeBase.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/AttributeBase.h b/src/AbstractObjects/AttributeBase.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/AttributeHandler.cpp b/src/AbstractObjects/AttributeHandler.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/AttributeHandler.h b/src/AbstractObjects/AttributeHandler.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/BeamSequence.cpp b/src/AbstractObjects/BeamSequence.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/BeamSequence.h b/src/AbstractObjects/BeamSequence.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/CMakeLists.txt b/src/AbstractObjects/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Definition.cpp b/src/AbstractObjects/Definition.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Definition.h b/src/AbstractObjects/Definition.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Directory.cpp b/src/AbstractObjects/Directory.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Directory.h b/src/AbstractObjects/Directory.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Editor.cpp b/src/AbstractObjects/Editor.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Editor.h b/src/AbstractObjects/Editor.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Element.cpp b/src/AbstractObjects/Element.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Element.h b/src/AbstractObjects/Element.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Expressions.h b/src/AbstractObjects/Expressions.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Invalidator.cpp b/src/AbstractObjects/Invalidator.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Invalidator.h b/src/AbstractObjects/Invalidator.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Object.cpp b/src/AbstractObjects/Object.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Object.h b/src/AbstractObjects/Object.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/ObjectFunction.cpp b/src/AbstractObjects/ObjectFunction.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/ObjectFunction.h b/src/AbstractObjects/ObjectFunction.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/OpalData.cpp b/src/AbstractObjects/OpalData.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/OpalData.h b/src/AbstractObjects/OpalData.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/PlaceRep.cpp b/src/AbstractObjects/PlaceRep.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/PlaceRep.h b/src/AbstractObjects/PlaceRep.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/RangeRep.cpp b/src/AbstractObjects/RangeRep.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/RangeRep.h b/src/AbstractObjects/RangeRep.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Table.cpp b/src/AbstractObjects/Table.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/Table.h b/src/AbstractObjects/Table.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/TableRowRep.cpp b/src/AbstractObjects/TableRowRep.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/TableRowRep.h b/src/AbstractObjects/TableRowRep.h
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/ValueDefinition.cpp b/src/AbstractObjects/ValueDefinition.cpp
old mode 100755
new mode 100644
diff --git a/src/AbstractObjects/ValueDefinition.h b/src/AbstractObjects/ValueDefinition.h
old mode 100755
new mode 100644
diff --git a/src/Algebra/CMakeLists.txt b/src/Algebra/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Algebra/QRSolver.cpp b/src/Algebra/QRSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Algebra/QRSolver.h b/src/Algebra/QRSolver.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/AutophaseTracker.cpp b/src/Algorithms/AutophaseTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/AutophaseTracker.h b/src/Algorithms/AutophaseTracker.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/BeamBeam3D.cpp b/src/Algorithms/BeamBeam3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/BeamBeam3D.h b/src/Algorithms/BeamBeam3D.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/CMakeLists.txt b/src/Algorithms/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Algorithms/CavityAutophaser.cpp b/src/Algorithms/CavityAutophaser.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/CavityAutophaser.h b/src/Algorithms/CavityAutophaser.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/Ctunes.h b/src/Algorithms/Ctunes.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/Ctunes.hpp b/src/Algorithms/Ctunes.hpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/IndexMap.cpp b/src/Algorithms/IndexMap.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/IndexMap.h b/src/Algorithms/IndexMap.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/LieMapper.cpp b/src/Algorithms/LieMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/LieMapper.h b/src/Algorithms/LieMapper.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/MPSplitIntegrator.cpp b/src/Algorithms/MPSplitIntegrator.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/MPSplitIntegrator.h b/src/Algorithms/MPSplitIntegrator.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/NilTracker.cpp b/src/Algorithms/NilTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/NilTracker.h b/src/Algorithms/NilTracker.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/OrbitThreader.cpp b/src/Algorithms/OrbitThreader.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/OrbitThreader.h b/src/Algorithms/OrbitThreader.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ParallelCyclotronTracker.cpp b/src/Algorithms/ParallelCyclotronTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ParallelCyclotronTracker.h b/src/Algorithms/ParallelCyclotronTracker.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ParallelSliceTracker.cpp b/src/Algorithms/ParallelSliceTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ParallelSliceTracker.h b/src/Algorithms/ParallelSliceTracker.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ParallelTTracker.cpp b/src/Algorithms/ParallelTTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ParallelTTracker.h b/src/Algorithms/ParallelTTracker.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/StatisticalErrors.cpp b/src/Algorithms/StatisticalErrors.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/StatisticalErrors.h b/src/Algorithms/StatisticalErrors.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/StatisticalErrorsUtilities.cpp b/src/Algorithms/StatisticalErrorsUtilities.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/StatisticalErrorsUtilities.h b/src/Algorithms/StatisticalErrorsUtilities.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ThickMapper.cpp b/src/Algorithms/ThickMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ThickMapper.h b/src/Algorithms/ThickMapper.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ThickTracker.cpp b/src/Algorithms/ThickTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/ThickTracker.h b/src/Algorithms/ThickTracker.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/TransportMapper.cpp b/src/Algorithms/TransportMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/TransportMapper.h b/src/Algorithms/TransportMapper.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/BetError.cpp b/src/Algorithms/bet/BetError.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/BetError.h b/src/Algorithms/bet/BetError.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/EnvelopeBunch.cpp b/src/Algorithms/bet/EnvelopeBunch.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/EnvelopeBunch.h b/src/Algorithms/bet/EnvelopeBunch.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/EnvelopeSlice.cpp b/src/Algorithms/bet/EnvelopeSlice.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/EnvelopeSlice.h b/src/Algorithms/bet/EnvelopeSlice.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/error.cpp b/src/Algorithms/bet/error.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/error.h b/src/Algorithms/bet/error.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/functions.cpp b/src/Algorithms/bet/math/functions.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/functions.h b/src/Algorithms/bet/math/functions.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/integrate.cpp b/src/Algorithms/bet/math/integrate.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/integrate.h b/src/Algorithms/bet/math/integrate.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/interpol.cpp b/src/Algorithms/bet/math/interpol.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/interpol.h b/src/Algorithms/bet/math/interpol.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/linfit.cpp b/src/Algorithms/bet/math/linfit.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/linfit.h b/src/Algorithms/bet/math/linfit.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/rk.cpp b/src/Algorithms/bet/math/rk.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/rk.h b/src/Algorithms/bet/math/rk.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/root.cpp b/src/Algorithms/bet/math/root.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/root.h b/src/Algorithms/bet/math/root.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/savgol.cpp b/src/Algorithms/bet/math/savgol.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/savgol.h b/src/Algorithms/bet/math/savgol.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/sort.cpp b/src/Algorithms/bet/math/sort.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/sort.h b/src/Algorithms/bet/math/sort.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/svdfit.cpp b/src/Algorithms/bet/math/svdfit.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/math/svdfit.h b/src/Algorithms/bet/math/svdfit.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/profile.cpp b/src/Algorithms/bet/profile.cpp
old mode 100755
new mode 100644
diff --git a/src/Algorithms/bet/profile.h b/src/Algorithms/bet/profile.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/lomb.h b/src/Algorithms/lomb.h
old mode 100755
new mode 100644
diff --git a/src/Algorithms/lomb.hpp b/src/Algorithms/lomb.hpp
old mode 100755
new mode 100644
diff --git a/src/Amr/AbstractAmrWriter.h b/src/Amr/AbstractAmrWriter.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrBoxLib.cpp b/src/Amr/AmrBoxLib.cpp
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrBoxLib.h b/src/Amr/AmrBoxLib.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrBoxLib_F.h b/src/Amr/AmrBoxLib_F.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrDefs.h b/src/Amr/AmrDefs.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrObject.cpp b/src/Amr/AmrObject.cpp
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrObject.h b/src/Amr/AmrObject.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrPythonWriter.cpp b/src/Amr/AmrPythonWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrPythonWriter.h b/src/Amr/AmrPythonWriter.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrSliceWriter.cpp b/src/Amr/AmrSliceWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrSliceWriter.h b/src/Amr/AmrSliceWriter.h
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrYtWriter.cpp b/src/Amr/AmrYtWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Amr/AmrYtWriter.h b/src/Amr/AmrYtWriter.h
old mode 100755
new mode 100644
diff --git a/src/Amr/BoxLibLayout.h b/src/Amr/BoxLibLayout.h
old mode 100755
new mode 100644
diff --git a/src/Amr/BoxLibLayout.hpp b/src/Amr/BoxLibLayout.hpp
old mode 100755
new mode 100644
diff --git a/src/Amr/BoxLibParticle.h b/src/Amr/BoxLibParticle.h
old mode 100755
new mode 100644
diff --git a/src/Amr/BoxLibParticle.hpp b/src/Amr/BoxLibParticle.hpp
old mode 100755
new mode 100644
diff --git a/src/Amr/CMakeLists.txt b/src/Amr/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Amr/Tagging_nd.f90 b/src/Amr/Tagging_nd.f90
old mode 100755
new mode 100644
diff --git a/src/Aperture/Aperture.cpp b/src/Aperture/Aperture.cpp
old mode 100755
new mode 100644
diff --git a/src/Aperture/Aperture.h b/src/Aperture/Aperture.h
old mode 100755
new mode 100644
diff --git a/src/Aperture/CMakeLists.txt b/src/Aperture/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Aperture/Split.cpp b/src/Aperture/Split.cpp
old mode 100755
new mode 100644
diff --git a/src/Aperture/Split.h b/src/Aperture/Split.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/Attributes.cpp b/src/Attributes/Attributes.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/Attributes.h b/src/Attributes/Attributes.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/Bool.cpp b/src/Attributes/Bool.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/Bool.h b/src/Attributes/Bool.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/BoolArray.cpp b/src/Attributes/BoolArray.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/BoolArray.h b/src/Attributes/BoolArray.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/CMakeLists.txt b/src/Attributes/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Attributes/Place.cpp b/src/Attributes/Place.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/Place.h b/src/Attributes/Place.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/Range.cpp b/src/Attributes/Range.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/Range.h b/src/Attributes/Range.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/Real.cpp b/src/Attributes/Real.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/Real.h b/src/Attributes/Real.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/RealArray.cpp b/src/Attributes/RealArray.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/RealArray.h b/src/Attributes/RealArray.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/Reference.cpp b/src/Attributes/Reference.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/Reference.h b/src/Attributes/Reference.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/StringArray.cpp b/src/Attributes/StringArray.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/StringArray.h b/src/Attributes/StringArray.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/TableRow.cpp b/src/Attributes/TableRow.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/TableRow.h b/src/Attributes/TableRow.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/TokenList.cpp b/src/Attributes/TokenList.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/TokenList.h b/src/Attributes/TokenList.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/TokenListArray.cpp b/src/Attributes/TokenListArray.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/TokenListArray.h b/src/Attributes/TokenListArray.h
old mode 100755
new mode 100644
diff --git a/src/Attributes/opalstr.cpp b/src/Attributes/opalstr.cpp
old mode 100755
new mode 100644
diff --git a/src/Attributes/opalstr.h b/src/Attributes/opalstr.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/CMakeLists.txt b/src/BasicActions/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Call.cpp b/src/BasicActions/Call.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Call.h b/src/BasicActions/Call.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Dump.cpp b/src/BasicActions/Dump.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Dump.h b/src/BasicActions/Dump.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/DumpEMFields.cpp b/src/BasicActions/DumpEMFields.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/DumpEMFields.h b/src/BasicActions/DumpEMFields.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/DumpFields.cpp b/src/BasicActions/DumpFields.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/DumpFields.h b/src/BasicActions/DumpFields.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Echo.cpp b/src/BasicActions/Echo.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Echo.h b/src/BasicActions/Echo.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Help.cpp b/src/BasicActions/Help.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Help.h b/src/BasicActions/Help.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Option.cpp b/src/BasicActions/Option.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Option.h b/src/BasicActions/Option.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/PSystem.cpp b/src/BasicActions/PSystem.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/PSystem.h b/src/BasicActions/PSystem.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Quit.cpp b/src/BasicActions/Quit.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Quit.h b/src/BasicActions/Quit.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Save.cpp b/src/BasicActions/Save.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Save.h b/src/BasicActions/Save.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Select.cpp b/src/BasicActions/Select.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Select.h b/src/BasicActions/Select.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Show.cpp b/src/BasicActions/Show.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Show.h b/src/BasicActions/Show.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Stop.cpp b/src/BasicActions/Stop.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Stop.h b/src/BasicActions/Stop.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/System.cpp b/src/BasicActions/System.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/System.h b/src/BasicActions/System.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Title.cpp b/src/BasicActions/Title.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Title.h b/src/BasicActions/Title.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Value.cpp b/src/BasicActions/Value.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/Value.h b/src/BasicActions/Value.h
old mode 100755
new mode 100644
diff --git a/src/BasicActions/What.cpp b/src/BasicActions/What.cpp
old mode 100755
new mode 100644
diff --git a/src/BasicActions/What.h b/src/BasicActions/What.h
old mode 100755
new mode 100644
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/AlignWrapper.cpp b/src/Classic/AbsBeamline/AlignWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/AlignWrapper.h b/src/Classic/AbsBeamline/AlignWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/AttributeSet.cpp b/src/Classic/AbsBeamline/AttributeSet.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/AttributeSet.h b/src/Classic/AbsBeamline/AttributeSet.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/BeamBeam.cpp b/src/Classic/AbsBeamline/BeamBeam.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/BeamBeam.h b/src/Classic/AbsBeamline/BeamBeam.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/BeamlineVisitor.cpp b/src/Classic/AbsBeamline/BeamlineVisitor.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/BeamlineVisitor.h b/src/Classic/AbsBeamline/BeamlineVisitor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Bend.cpp b/src/Classic/AbsBeamline/Bend.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Bend.h b/src/Classic/AbsBeamline/Bend.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/BendBase.cpp b/src/Classic/AbsBeamline/BendBase.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/BendBase.h b/src/Classic/AbsBeamline/BendBase.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/CMakeLists.txt b/src/Classic/AbsBeamline/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Collimator.cpp b/src/Classic/AbsBeamline/Collimator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Collimator.h b/src/Classic/AbsBeamline/Collimator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Component.cpp b/src/Classic/AbsBeamline/Component.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Component.h b/src/Classic/AbsBeamline/Component.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Corrector.cpp b/src/Classic/AbsBeamline/Corrector.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Corrector.h b/src/Classic/AbsBeamline/Corrector.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Cyclotron.cpp b/src/Classic/AbsBeamline/Cyclotron.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Cyclotron.h b/src/Classic/AbsBeamline/Cyclotron.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/CyclotronValley.cpp b/src/Classic/AbsBeamline/CyclotronValley.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/CyclotronValley.h b/src/Classic/AbsBeamline/CyclotronValley.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Degrader.cpp b/src/Classic/AbsBeamline/Degrader.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Degrader.h b/src/Classic/AbsBeamline/Degrader.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Diagnostic.cpp b/src/Classic/AbsBeamline/Diagnostic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Diagnostic.h b/src/Classic/AbsBeamline/Diagnostic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Drift.cpp b/src/Classic/AbsBeamline/Drift.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Drift.h b/src/Classic/AbsBeamline/Drift.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ElementBase.cpp b/src/Classic/AbsBeamline/ElementBase.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ElementBase.h b/src/Classic/AbsBeamline/ElementBase.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ElementImage.cpp b/src/Classic/AbsBeamline/ElementImage.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ElementImage.h b/src/Classic/AbsBeamline/ElementImage.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/CMakeLists.txt b/src/Classic/AbsBeamline/EndFieldModel/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.cpp b/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.h b/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/Enge.cpp b/src/Classic/AbsBeamline/EndFieldModel/Enge.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/Enge.h b/src/Classic/AbsBeamline/EndFieldModel/Enge.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/Tanh.cpp b/src/Classic/AbsBeamline/EndFieldModel/Tanh.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/EndFieldModel/Tanh.h b/src/Classic/AbsBeamline/EndFieldModel/Tanh.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Integrator.cpp b/src/Classic/AbsBeamline/Integrator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Integrator.h b/src/Classic/AbsBeamline/Integrator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Lambertson.cpp b/src/Classic/AbsBeamline/Lambertson.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Lambertson.h b/src/Classic/AbsBeamline/Lambertson.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Marker.cpp b/src/Classic/AbsBeamline/Marker.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Marker.h b/src/Classic/AbsBeamline/Marker.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Monitor.cpp b/src/Classic/AbsBeamline/Monitor.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Monitor.h b/src/Classic/AbsBeamline/Monitor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Multipole.cpp b/src/Classic/AbsBeamline/Multipole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Multipole.h b/src/Classic/AbsBeamline/Multipole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/MultipoleT.cpp b/src/Classic/AbsBeamline/MultipoleT.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/MultipoleT.h b/src/Classic/AbsBeamline/MultipoleT.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/MultipoleT.png b/src/Classic/AbsBeamline/MultipoleT.png
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Offset.cpp b/src/Classic/AbsBeamline/Offset.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Offset.h b/src/Classic/AbsBeamline/Offset.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ParallelPlate.cpp b/src/Classic/AbsBeamline/ParallelPlate.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ParallelPlate.h b/src/Classic/AbsBeamline/ParallelPlate.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Patch.cpp b/src/Classic/AbsBeamline/Patch.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Patch.h b/src/Classic/AbsBeamline/Patch.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Probe.cpp b/src/Classic/AbsBeamline/Probe.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Probe.h b/src/Classic/AbsBeamline/Probe.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RBend.cpp b/src/Classic/AbsBeamline/RBend.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RBend.h b/src/Classic/AbsBeamline/RBend.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RBend3D.cpp b/src/Classic/AbsBeamline/RBend3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RBend3D.h b/src/Classic/AbsBeamline/RBend3D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RFCavity.cpp b/src/Classic/AbsBeamline/RFCavity.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RFCavity.h b/src/Classic/AbsBeamline/RFCavity.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RFQuadrupole.cpp b/src/Classic/AbsBeamline/RFQuadrupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/RFQuadrupole.h b/src/Classic/AbsBeamline/RFQuadrupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Ring.cpp b/src/Classic/AbsBeamline/Ring.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Ring.h b/src/Classic/AbsBeamline/Ring.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/SBend.cpp b/src/Classic/AbsBeamline/SBend.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/SBend.h b/src/Classic/AbsBeamline/SBend.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/SBend3D.cpp b/src/Classic/AbsBeamline/SBend3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/SBend3D.h b/src/Classic/AbsBeamline/SBend3D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp b/src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/ScalingFFAGMagnet.h b/src/Classic/AbsBeamline/ScalingFFAGMagnet.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/SectorFieldMapComponent.h b/src/Classic/AbsBeamline/SectorFieldMapComponent.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Separator.cpp b/src/Classic/AbsBeamline/Separator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Separator.h b/src/Classic/AbsBeamline/Separator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Septum.cpp b/src/Classic/AbsBeamline/Septum.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Septum.h b/src/Classic/AbsBeamline/Septum.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Solenoid.cpp b/src/Classic/AbsBeamline/Solenoid.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Solenoid.h b/src/Classic/AbsBeamline/Solenoid.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Source.cpp b/src/Classic/AbsBeamline/Source.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Source.h b/src/Classic/AbsBeamline/Source.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/SpecificElementVisitor.h b/src/Classic/AbsBeamline/SpecificElementVisitor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Stripper.cpp b/src/Classic/AbsBeamline/Stripper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/Stripper.h b/src/Classic/AbsBeamline/Stripper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/TravelingWave.cpp b/src/Classic/AbsBeamline/TravelingWave.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/TravelingWave.h b/src/Classic/AbsBeamline/TravelingWave.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/VariableRFCavity.cpp b/src/Classic/AbsBeamline/VariableRFCavity.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/VariableRFCavity.h b/src/Classic/AbsBeamline/VariableRFCavity.h
old mode 100755
new mode 100644
diff --git a/src/Classic/AbsBeamline/multipole_t.tex b/src/Classic/AbsBeamline/multipole_t.tex
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Array1D.h b/src/Classic/Algebra/Array1D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Array2D.h b/src/Classic/Algebra/Array2D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/CMakeLists.txt b/src/Classic/Algebra/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/ComplexEigen.cpp b/src/Classic/Algebra/ComplexEigen.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/ComplexEigen.h b/src/Classic/Algebra/ComplexEigen.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/DoubleEigen.cpp b/src/Classic/Algebra/DoubleEigen.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/DoubleEigen.h b/src/Classic/Algebra/DoubleEigen.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/DynamicFixedPoint.cpp b/src/Classic/Algebra/DynamicFixedPoint.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/DynamicFixedPoint.h b/src/Classic/Algebra/DynamicFixedPoint.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/LUMatrix.h b/src/Classic/Algebra/LUMatrix.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/LieMap.h b/src/Classic/Algebra/LieMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Matrix.h b/src/Classic/Algebra/Matrix.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/NormalForm.cpp b/src/Classic/Algebra/NormalForm.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/NormalForm.h b/src/Classic/Algebra/NormalForm.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/SliceIterator.h b/src/Classic/Algebra/SliceIterator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/StaticFixedPoint.cpp b/src/Classic/Algebra/StaticFixedPoint.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/StaticFixedPoint.h b/src/Classic/Algebra/StaticFixedPoint.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Tps.cpp b/src/Classic/Algebra/Tps.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Tps.h b/src/Classic/Algebra/Tps.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsComplex.cpp b/src/Classic/Algebra/TpsComplex.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsData.cpp b/src/Classic/Algebra/TpsData.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsData.h b/src/Classic/Algebra/TpsData.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsDouble.cpp b/src/Classic/Algebra/TpsDouble.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsMath.h b/src/Classic/Algebra/TpsMath.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsMonomial.cpp b/src/Classic/Algebra/TpsMonomial.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsMonomial.h b/src/Classic/Algebra/TpsMonomial.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsSubstitution.h b/src/Classic/Algebra/TpsSubstitution.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/TpsTps.cpp b/src/Classic/Algebra/TpsTps.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Vector.h b/src/Classic/Algebra/Vector.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Vps.cpp b/src/Classic/Algebra/Vps.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/Vps.h b/src/Classic/Algebra/Vps.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/VpsInvMap.h b/src/Classic/Algebra/VpsInvMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algebra/VpsMap.h b/src/Classic/Algebra/VpsMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AbstractMapper.cpp b/src/Classic/Algorithms/AbstractMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AbstractMapper.h b/src/Classic/Algorithms/AbstractMapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AbstractTimeDependence.cpp b/src/Classic/Algorithms/AbstractTimeDependence.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AbstractTimeDependence.h b/src/Classic/Algorithms/AbstractTimeDependence.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AbstractTracker.cpp b/src/Classic/Algorithms/AbstractTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AbstractTracker.h b/src/Classic/Algorithms/AbstractTracker.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AmrPartBunch.cpp b/src/Classic/Algorithms/AmrPartBunch.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/AmrPartBunch.h b/src/Classic/Algorithms/AmrPartBunch.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/CMakeLists.txt b/src/Classic/Algorithms/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/CoordinateSystemTrafo.cpp b/src/Classic/Algorithms/CoordinateSystemTrafo.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/CoordinateSystemTrafo.h b/src/Classic/Algorithms/CoordinateSystemTrafo.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/DefaultVisitor.cpp b/src/Classic/Algorithms/DefaultVisitor.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/DefaultVisitor.h b/src/Classic/Algorithms/DefaultVisitor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Flagger.cpp b/src/Classic/Algorithms/Flagger.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Flagger.h b/src/Classic/Algorithms/Flagger.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/IdealMapper.cpp b/src/Classic/Algorithms/IdealMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/IdealMapper.h b/src/Classic/Algorithms/IdealMapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/LinearMapper.cpp b/src/Classic/Algorithms/LinearMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/LinearMapper.h b/src/Classic/Algorithms/LinearMapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/ListElem.h b/src/Classic/Algorithms/ListElem.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/MapIntegrator.cpp b/src/Classic/Algorithms/MapIntegrator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/MapIntegrator.h b/src/Classic/Algorithms/MapIntegrator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Mapper.cpp b/src/Classic/Algorithms/Mapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Mapper.h b/src/Classic/Algorithms/Mapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/OpalParticle.cpp b/src/Classic/Algorithms/OpalParticle.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/OpalParticle.h b/src/Classic/Algorithms/OpalParticle.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/OrbitTracker.cpp b/src/Classic/Algorithms/OrbitTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/OrbitTracker.h b/src/Classic/Algorithms/OrbitTracker.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PBunchDefs.h b/src/Classic/Algorithms/PBunchDefs.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBins.cpp b/src/Classic/Algorithms/PartBins.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBins.h b/src/Classic/Algorithms/PartBins.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBinsCyc.cpp b/src/Classic/Algorithms/PartBinsCyc.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBinsCyc.h b/src/Classic/Algorithms/PartBinsCyc.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBunch.cpp b/src/Classic/Algorithms/PartBunch.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBunch.h b/src/Classic/Algorithms/PartBunch.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBunchBase.h b/src/Classic/Algorithms/PartBunchBase.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartBunchBase.hpp b/src/Classic/Algorithms/PartBunchBase.hpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartData.cpp b/src/Classic/Algorithms/PartData.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PartData.h b/src/Classic/Algorithms/PartData.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PolynomialTimeDependence.cpp b/src/Classic/Algorithms/PolynomialTimeDependence.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/PolynomialTimeDependence.h b/src/Classic/Algorithms/PolynomialTimeDependence.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Quaternion.cpp b/src/Classic/Algorithms/Quaternion.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Quaternion.h b/src/Classic/Algorithms/Quaternion.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Surveyor.cpp b/src/Classic/Algorithms/Surveyor.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Surveyor.h b/src/Classic/Algorithms/Surveyor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/ThinMapper.cpp b/src/Classic/Algorithms/ThinMapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/ThinMapper.h b/src/Classic/Algorithms/ThinMapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/ThinTracker.cpp b/src/Classic/Algorithms/ThinTracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/ThinTracker.h b/src/Classic/Algorithms/ThinTracker.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/TrackIntegrator.cpp b/src/Classic/Algorithms/TrackIntegrator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/TrackIntegrator.h b/src/Classic/Algorithms/TrackIntegrator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Tracker.cpp b/src/Classic/Algorithms/Tracker.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Tracker.h b/src/Classic/Algorithms/Tracker.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/Vektor.h b/src/Classic/Algorithms/Vektor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Algorithms/rbendmap.h b/src/Classic/Algorithms/rbendmap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/BeamBeamRep.cpp b/src/Classic/BeamlineCore/BeamBeamRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/BeamBeamRep.h b/src/Classic/BeamlineCore/BeamBeamRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CMakeLists.txt b/src/Classic/BeamlineCore/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CollimatorRep.cpp b/src/Classic/BeamlineCore/CollimatorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CollimatorRep.h b/src/Classic/BeamlineCore/CollimatorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CorrectorRep.cpp b/src/Classic/BeamlineCore/CorrectorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CorrectorRep.h b/src/Classic/BeamlineCore/CorrectorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CyclotronRep.cpp b/src/Classic/BeamlineCore/CyclotronRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CyclotronRep.h b/src/Classic/BeamlineCore/CyclotronRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CyclotronValleyRep.cpp b/src/Classic/BeamlineCore/CyclotronValleyRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/CyclotronValleyRep.h b/src/Classic/BeamlineCore/CyclotronValleyRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/DegraderRep.cpp b/src/Classic/BeamlineCore/DegraderRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/DegraderRep.h b/src/Classic/BeamlineCore/DegraderRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/DriftRep.cpp b/src/Classic/BeamlineCore/DriftRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/DriftRep.h b/src/Classic/BeamlineCore/DriftRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/MarkerRep.cpp b/src/Classic/BeamlineCore/MarkerRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/MarkerRep.h b/src/Classic/BeamlineCore/MarkerRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/MonitorRep.cpp b/src/Classic/BeamlineCore/MonitorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/MonitorRep.h b/src/Classic/BeamlineCore/MonitorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/MultipoleRep.cpp b/src/Classic/BeamlineCore/MultipoleRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/MultipoleRep.h b/src/Classic/BeamlineCore/MultipoleRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/Octupole.cpp b/src/Classic/BeamlineCore/Octupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/Octupole.h b/src/Classic/BeamlineCore/Octupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/ParallelPlateRep.cpp b/src/Classic/BeamlineCore/ParallelPlateRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/ParallelPlateRep.h b/src/Classic/BeamlineCore/ParallelPlateRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/PatchRep.cpp b/src/Classic/BeamlineCore/PatchRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/PatchRep.h b/src/Classic/BeamlineCore/PatchRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/ProbeRep.cpp b/src/Classic/BeamlineCore/ProbeRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/ProbeRep.h b/src/Classic/BeamlineCore/ProbeRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/Quadrupole.cpp b/src/Classic/BeamlineCore/Quadrupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/Quadrupole.h b/src/Classic/BeamlineCore/Quadrupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/RBendRep.cpp b/src/Classic/BeamlineCore/RBendRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/RBendRep.h b/src/Classic/BeamlineCore/RBendRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/RFCavityRep.cpp b/src/Classic/BeamlineCore/RFCavityRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/RFCavityRep.h b/src/Classic/BeamlineCore/RFCavityRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SBendRep.cpp b/src/Classic/BeamlineCore/SBendRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SBendRep.h b/src/Classic/BeamlineCore/SBendRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SeparatorRep.cpp b/src/Classic/BeamlineCore/SeparatorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SeparatorRep.h b/src/Classic/BeamlineCore/SeparatorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SeptumRep.cpp b/src/Classic/BeamlineCore/SeptumRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SeptumRep.h b/src/Classic/BeamlineCore/SeptumRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/Sextupole.cpp b/src/Classic/BeamlineCore/Sextupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/Sextupole.h b/src/Classic/BeamlineCore/Sextupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SingleMultipole.h b/src/Classic/BeamlineCore/SingleMultipole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SkewOctupole.cpp b/src/Classic/BeamlineCore/SkewOctupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SkewOctupole.h b/src/Classic/BeamlineCore/SkewOctupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SkewQuadrupole.cpp b/src/Classic/BeamlineCore/SkewQuadrupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SkewQuadrupole.h b/src/Classic/BeamlineCore/SkewQuadrupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SkewSextupole.cpp b/src/Classic/BeamlineCore/SkewSextupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SkewSextupole.h b/src/Classic/BeamlineCore/SkewSextupole.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SolenoidRep.cpp b/src/Classic/BeamlineCore/SolenoidRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SolenoidRep.h b/src/Classic/BeamlineCore/SolenoidRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SourceRep.cpp b/src/Classic/BeamlineCore/SourceRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/SourceRep.h b/src/Classic/BeamlineCore/SourceRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/StripperRep.cpp b/src/Classic/BeamlineCore/StripperRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/StripperRep.h b/src/Classic/BeamlineCore/StripperRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/TravelingWaveRep.cpp b/src/Classic/BeamlineCore/TravelingWaveRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/TravelingWaveRep.h b/src/Classic/BeamlineCore/TravelingWaveRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/XCorrectorRep.cpp b/src/Classic/BeamlineCore/XCorrectorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/XCorrectorRep.h b/src/Classic/BeamlineCore/XCorrectorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/XMonitorRep.cpp b/src/Classic/BeamlineCore/XMonitorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/XMonitorRep.h b/src/Classic/BeamlineCore/XMonitorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/YCorrectorRep.cpp b/src/Classic/BeamlineCore/YCorrectorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/YCorrectorRep.h b/src/Classic/BeamlineCore/YCorrectorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/YMonitorRep.cpp b/src/Classic/BeamlineCore/YMonitorRep.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineCore/YMonitorRep.h b/src/Classic/BeamlineCore/YMonitorRep.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/CMakeLists.txt b/src/Classic/BeamlineGeometry/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Euclid3D.cpp b/src/Classic/BeamlineGeometry/Euclid3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Euclid3D.h b/src/Classic/BeamlineGeometry/Euclid3D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Euclid3DGeometry.cpp b/src/Classic/BeamlineGeometry/Euclid3DGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Euclid3DGeometry.h b/src/Classic/BeamlineGeometry/Euclid3DGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Geometry.cpp b/src/Classic/BeamlineGeometry/Geometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Geometry.h b/src/Classic/BeamlineGeometry/Geometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Matrix3D.cpp b/src/Classic/BeamlineGeometry/Matrix3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Matrix3D.h b/src/Classic/BeamlineGeometry/Matrix3D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/NullGeometry.cpp b/src/Classic/BeamlineGeometry/NullGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/NullGeometry.h b/src/Classic/BeamlineGeometry/NullGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/OffsetGeometry.cpp b/src/Classic/BeamlineGeometry/OffsetGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/OffsetGeometry.h b/src/Classic/BeamlineGeometry/OffsetGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/PlanarArcGeometry.cpp b/src/Classic/BeamlineGeometry/PlanarArcGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/PlanarArcGeometry.h b/src/Classic/BeamlineGeometry/PlanarArcGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/RBendGeometry.cpp b/src/Classic/BeamlineGeometry/RBendGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/RBendGeometry.h b/src/Classic/BeamlineGeometry/RBendGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Rotation3D.cpp b/src/Classic/BeamlineGeometry/Rotation3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Rotation3D.h b/src/Classic/BeamlineGeometry/Rotation3D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/SRotatedGeometry.cpp b/src/Classic/BeamlineGeometry/SRotatedGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/SRotatedGeometry.h b/src/Classic/BeamlineGeometry/SRotatedGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/StraightGeometry.cpp b/src/Classic/BeamlineGeometry/StraightGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/StraightGeometry.h b/src/Classic/BeamlineGeometry/StraightGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Vector3D.cpp b/src/Classic/BeamlineGeometry/Vector3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/BeamlineGeometry/Vector3D.h b/src/Classic/BeamlineGeometry/Vector3D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/Beamline.cpp b/src/Classic/Beamlines/Beamline.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/Beamline.h b/src/Classic/Beamlines/Beamline.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/BeamlineGeometry.cpp b/src/Classic/Beamlines/BeamlineGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/BeamlineGeometry.h b/src/Classic/Beamlines/BeamlineGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/CMakeLists.txt b/src/Classic/Beamlines/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/ElmPtr.cpp b/src/Classic/Beamlines/ElmPtr.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/ElmPtr.h b/src/Classic/Beamlines/ElmPtr.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/FlaggedBeamline.cpp b/src/Classic/Beamlines/FlaggedBeamline.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/FlaggedBeamline.h b/src/Classic/Beamlines/FlaggedBeamline.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/FlaggedElmPtr.cpp b/src/Classic/Beamlines/FlaggedElmPtr.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/FlaggedElmPtr.h b/src/Classic/Beamlines/FlaggedElmPtr.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/SimpleBeamline.cpp b/src/Classic/Beamlines/SimpleBeamline.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/SimpleBeamline.h b/src/Classic/Beamlines/SimpleBeamline.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Beamlines/TBeamline.h b/src/Classic/Beamlines/TBeamline.h
old mode 100755
new mode 100644
diff --git a/src/Classic/CMakeLists.txt b/src/Classic/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/CMakeLists.txt b/src/Classic/Channels/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/Channel.cpp b/src/Classic/Channels/Channel.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/Channel.h b/src/Classic/Channels/Channel.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/ConstChannel.cpp b/src/Classic/Channels/ConstChannel.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/ConstChannel.h b/src/Classic/Channels/ConstChannel.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/DirectChannel.h b/src/Classic/Channels/DirectChannel.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/IndexedChannel.h b/src/Classic/Channels/IndexedChannel.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Channels/IndirectChannel.h b/src/Classic/Channels/IndirectChannel.h
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/CMakeLists.txt b/src/Classic/ComponentWrappers/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/CorrectorWrapper.cpp b/src/Classic/ComponentWrappers/CorrectorWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/CorrectorWrapper.h b/src/Classic/ComponentWrappers/CorrectorWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/CyclotronWrapper.cpp b/src/Classic/ComponentWrappers/CyclotronWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/CyclotronWrapper.h b/src/Classic/ComponentWrappers/CyclotronWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/MultipoleWrapper.cpp b/src/Classic/ComponentWrappers/MultipoleWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/MultipoleWrapper.h b/src/Classic/ComponentWrappers/MultipoleWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/RBendWrapper.cpp b/src/Classic/ComponentWrappers/RBendWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/RBendWrapper.h b/src/Classic/ComponentWrappers/RBendWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/SBendWrapper.cpp b/src/Classic/ComponentWrappers/SBendWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/ComponentWrappers/SBendWrapper.h b/src/Classic/ComponentWrappers/SBendWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Construction/CMakeLists.txt b/src/Classic/Construction/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Construction/ElementFactory.cpp b/src/Classic/Construction/ElementFactory.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Construction/ElementFactory.h b/src/Classic/Construction/ElementFactory.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Construction/Factory.cpp b/src/Classic/Construction/Factory.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Construction/Factory.h b/src/Classic/Construction/Factory.h
old mode 100755
new mode 100644
diff --git a/src/Classic/DipoleFieldTest.cpp b/src/Classic/DipoleFieldTest.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/AcceleratingField.h b/src/Classic/Fields/AcceleratingField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DDynamic.cpp b/src/Classic/Fields/Astra1DDynamic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DDynamic.h b/src/Classic/Fields/Astra1DDynamic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DDynamic_fast.cpp b/src/Classic/Fields/Astra1DDynamic_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DDynamic_fast.h b/src/Classic/Fields/Astra1DDynamic_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DElectroStatic.cpp b/src/Classic/Fields/Astra1DElectroStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DElectroStatic.h b/src/Classic/Fields/Astra1DElectroStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DElectroStatic_fast.cpp b/src/Classic/Fields/Astra1DElectroStatic_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DElectroStatic_fast.h b/src/Classic/Fields/Astra1DElectroStatic_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DMagnetoStatic.cpp b/src/Classic/Fields/Astra1DMagnetoStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DMagnetoStatic.h b/src/Classic/Fields/Astra1DMagnetoStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DMagnetoStatic_fast.cpp b/src/Classic/Fields/Astra1DMagnetoStatic_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1DMagnetoStatic_fast.h b/src/Classic/Fields/Astra1DMagnetoStatic_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1D_fast.cpp b/src/Classic/Fields/Astra1D_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Astra1D_fast.h b/src/Classic/Fields/Astra1D_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/BDipoleField.cpp b/src/Classic/Fields/BDipoleField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/BDipoleField.h b/src/Classic/Fields/BDipoleField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/BMultipoleField.cpp b/src/Classic/Fields/BMultipoleField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/BMultipoleField.h b/src/Classic/Fields/BMultipoleField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/BSingleMultipoleField.h b/src/Classic/Fields/BSingleMultipoleField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/CMakeLists.txt b/src/Classic/Fields/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstBField.cpp b/src/Classic/Fields/ConstBField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstBField.h b/src/Classic/Fields/ConstBField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstBzField.cpp b/src/Classic/Fields/ConstBzField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstBzField.h b/src/Classic/Fields/ConstBzField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstEField.cpp b/src/Classic/Fields/ConstEField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstEField.h b/src/Classic/Fields/ConstEField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstEzField.cpp b/src/Classic/Fields/ConstEzField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/ConstEzField.h b/src/Classic/Fields/ConstEzField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/EDipoleField.cpp b/src/Classic/Fields/EDipoleField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/EDipoleField.h b/src/Classic/Fields/EDipoleField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/EMField.cpp b/src/Classic/Fields/EMField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/EMField.h b/src/Classic/Fields/EMField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DDynamic.cpp b/src/Classic/Fields/FM1DDynamic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DDynamic.h b/src/Classic/Fields/FM1DDynamic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DDynamic_fast.cpp b/src/Classic/Fields/FM1DDynamic_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DDynamic_fast.h b/src/Classic/Fields/FM1DDynamic_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DElectroStatic.cpp b/src/Classic/Fields/FM1DElectroStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DElectroStatic.h b/src/Classic/Fields/FM1DElectroStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DElectroStatic_fast.cpp b/src/Classic/Fields/FM1DElectroStatic_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DElectroStatic_fast.h b/src/Classic/Fields/FM1DElectroStatic_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DMagnetoStatic.cpp b/src/Classic/Fields/FM1DMagnetoStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DMagnetoStatic.h b/src/Classic/Fields/FM1DMagnetoStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DMagnetoStatic_fast.cpp b/src/Classic/Fields/FM1DMagnetoStatic_fast.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DMagnetoStatic_fast.h b/src/Classic/Fields/FM1DMagnetoStatic_fast.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DProfile1.cpp b/src/Classic/Fields/FM1DProfile1.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DProfile1.h b/src/Classic/Fields/FM1DProfile1.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DProfile2.cpp b/src/Classic/Fields/FM1DProfile2.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM1DProfile2.h b/src/Classic/Fields/FM1DProfile2.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM2DDynamic.cpp b/src/Classic/Fields/FM2DDynamic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM2DDynamic.h b/src/Classic/Fields/FM2DDynamic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM2DElectroStatic.cpp b/src/Classic/Fields/FM2DElectroStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM2DElectroStatic.h b/src/Classic/Fields/FM2DElectroStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM2DMagnetoStatic.cpp b/src/Classic/Fields/FM2DMagnetoStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM2DMagnetoStatic.h b/src/Classic/Fields/FM2DMagnetoStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DDynamic.cpp b/src/Classic/Fields/FM3DDynamic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DDynamic.h b/src/Classic/Fields/FM3DDynamic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DH5Block.cpp b/src/Classic/Fields/FM3DH5Block.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DH5Block.h b/src/Classic/Fields/FM3DH5Block.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DH5Block_nonscale.cpp b/src/Classic/Fields/FM3DH5Block_nonscale.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DH5Block_nonscale.h b/src/Classic/Fields/FM3DH5Block_nonscale.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DMagnetoStatic.cpp b/src/Classic/Fields/FM3DMagnetoStatic.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DMagnetoStatic.h b/src/Classic/Fields/FM3DMagnetoStatic.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DMagnetoStaticExtended.cpp b/src/Classic/Fields/FM3DMagnetoStaticExtended.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DMagnetoStaticExtended.h b/src/Classic/Fields/FM3DMagnetoStaticExtended.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DMagnetoStaticH5Block.cpp b/src/Classic/Fields/FM3DMagnetoStaticH5Block.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FM3DMagnetoStaticH5Block.h b/src/Classic/Fields/FM3DMagnetoStaticH5Block.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FMDummy.cpp b/src/Classic/Fields/FMDummy.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/FMDummy.h b/src/Classic/Fields/FMDummy.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Fieldmap.cpp b/src/Classic/Fields/Fieldmap.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Fieldmap.h b/src/Classic/Fields/Fieldmap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Fieldmap.hpp b/src/Classic/Fields/Fieldmap.hpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/CMakeLists.txt b/src/Classic/Fields/Interpolation/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.cpp b/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.h b/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.cpp b/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.h b/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/MMatrix.cpp b/src/Classic/Fields/Interpolation/MMatrix.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/MMatrix.h b/src/Classic/Fields/Interpolation/MMatrix.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/MVector.cpp b/src/Classic/Fields/Interpolation/MVector.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/MVector.h b/src/Classic/Fields/Interpolation/MVector.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Mesh-inl.icc b/src/Classic/Fields/Interpolation/Mesh-inl.icc
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Mesh.cpp b/src/Classic/Fields/Interpolation/Mesh.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/Mesh.h b/src/Classic/Fields/Interpolation/Mesh.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/NDGrid.cpp b/src/Classic/Fields/Interpolation/NDGrid.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/NDGrid.h b/src/Classic/Fields/Interpolation/NDGrid.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/PPSolveFactory.cpp b/src/Classic/Fields/Interpolation/PPSolveFactory.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/PPSolveFactory.h b/src/Classic/Fields/Interpolation/PPSolveFactory.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/PolynomialCoefficient.cpp b/src/Classic/Fields/Interpolation/PolynomialCoefficient.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/PolynomialCoefficient.h b/src/Classic/Fields/Interpolation/PolynomialCoefficient.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/PolynomialPatch.cpp b/src/Classic/Fields/Interpolation/PolynomialPatch.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/PolynomialPatch.h b/src/Classic/Fields/Interpolation/PolynomialPatch.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/SolveFactory.cpp b/src/Classic/Fields/Interpolation/SolveFactory.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/SolveFactory.h b/src/Classic/Fields/Interpolation/SolveFactory.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/SquarePolynomialVector.cpp b/src/Classic/Fields/Interpolation/SquarePolynomialVector.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/SquarePolynomialVector.h b/src/Classic/Fields/Interpolation/SquarePolynomialVector.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/ThreeDGrid.cpp b/src/Classic/Fields/Interpolation/ThreeDGrid.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/ThreeDGrid.h b/src/Classic/Fields/Interpolation/ThreeDGrid.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/TriLinearInterpolator.cpp b/src/Classic/Fields/Interpolation/TriLinearInterpolator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/TriLinearInterpolator.h b/src/Classic/Fields/Interpolation/TriLinearInterpolator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/TwoDGrid.cpp b/src/Classic/Fields/Interpolation/TwoDGrid.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/TwoDGrid.h b/src/Classic/Fields/Interpolation/TwoDGrid.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/VectorMap.cpp b/src/Classic/Fields/Interpolation/VectorMap.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/VectorMap.h b/src/Classic/Fields/Interpolation/VectorMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/Interpolation/polynomial_solve_with_smoothing.tex b/src/Classic/Fields/Interpolation/polynomial_solve_with_smoothing.tex
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/NullField.cpp b/src/Classic/Fields/NullField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/NullField.h b/src/Classic/Fields/NullField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/OscillatingField.h b/src/Classic/Fields/OscillatingField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/SectorField.cpp b/src/Classic/Fields/SectorField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/SectorField.h b/src/Classic/Fields/SectorField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/SectorMagneticFieldMap.cpp b/src/Classic/Fields/SectorMagneticFieldMap.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/SectorMagneticFieldMap.h b/src/Classic/Fields/SectorMagneticFieldMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/StaticElectricField.cpp b/src/Classic/Fields/StaticElectricField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/StaticElectricField.h b/src/Classic/Fields/StaticElectricField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/StaticMagneticField.cpp b/src/Classic/Fields/StaticMagneticField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Fields/StaticMagneticField.h b/src/Classic/Fields/StaticMagneticField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/CMakeLists.txt b/src/Classic/Filters/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/Filter.h b/src/Classic/Filters/Filter.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/Filters.h b/src/Classic/Filters/Filters.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/FixedFFTLowPass.cpp b/src/Classic/Filters/FixedFFTLowPass.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/FixedFFTLowPass.h b/src/Classic/Filters/FixedFFTLowPass.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/RelativeFFTLowPass.cpp b/src/Classic/Filters/RelativeFFTLowPass.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/RelativeFFTLowPass.h b/src/Classic/Filters/RelativeFFTLowPass.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/SavitzkyGolay.cpp b/src/Classic/Filters/SavitzkyGolay.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/SavitzkyGolay.h b/src/Classic/Filters/SavitzkyGolay.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/Stencil.cpp b/src/Classic/Filters/Stencil.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Filters/Stencil.h b/src/Classic/Filters/Stencil.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/CMakeLists.txt b/src/Classic/FixedAlgebra/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/DragtFinnMap.cpp b/src/Classic/FixedAlgebra/DragtFinnMap.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/DragtFinnMap.h b/src/Classic/FixedAlgebra/DragtFinnMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/DragtFinnNormalForm.h b/src/Classic/FixedAlgebra/DragtFinnNormalForm.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FArray1D.h b/src/Classic/FixedAlgebra/FArray1D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FArray2D.h b/src/Classic/FixedAlgebra/FArray2D.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FComplexEigen.h b/src/Classic/FixedAlgebra/FComplexEigen.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FDoubleEigen.h b/src/Classic/FixedAlgebra/FDoubleEigen.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FDynamicFP.h b/src/Classic/FixedAlgebra/FDynamicFP.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FLUMatrix.h b/src/Classic/FixedAlgebra/FLUMatrix.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FLieGenerator.cpp b/src/Classic/FixedAlgebra/FLieGenerator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FLieGenerator.h b/src/Classic/FixedAlgebra/FLieGenerator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FMatrix.h b/src/Classic/FixedAlgebra/FMatrix.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FMonomial.h b/src/Classic/FixedAlgebra/FMonomial.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FNormalForm.h b/src/Classic/FixedAlgebra/FNormalForm.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FSlice.h b/src/Classic/FixedAlgebra/FSlice.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FStaticFP.h b/src/Classic/FixedAlgebra/FStaticFP.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FTps.cpp b/src/Classic/FixedAlgebra/FTps.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FTps.h b/src/Classic/FixedAlgebra/FTps.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FTpsData.h b/src/Classic/FixedAlgebra/FTpsData.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FTpsMath.h b/src/Classic/FixedAlgebra/FTpsMath.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FVector.h b/src/Classic/FixedAlgebra/FVector.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FVps.cpp b/src/Classic/FixedAlgebra/FVps.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/FVps.h b/src/Classic/FixedAlgebra/FVps.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/LinearFun.cpp b/src/Classic/FixedAlgebra/LinearFun.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/LinearFun.h b/src/Classic/FixedAlgebra/LinearFun.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/LinearMap.cpp b/src/Classic/FixedAlgebra/LinearMap.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/LinearMap.h b/src/Classic/FixedAlgebra/LinearMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/LinearMath.h b/src/Classic/FixedAlgebra/LinearMath.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/Taylor.cpp b/src/Classic/FixedAlgebra/Taylor.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/Taylor.h b/src/Classic/FixedAlgebra/Taylor.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/TransportFun.cpp b/src/Classic/FixedAlgebra/TransportFun.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/TransportFun.h b/src/Classic/FixedAlgebra/TransportFun.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/TransportMap.cpp b/src/Classic/FixedAlgebra/TransportMap.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/TransportMap.h b/src/Classic/FixedAlgebra/TransportMap.h
old mode 100755
new mode 100644
diff --git a/src/Classic/FixedAlgebra/TransportMath.h b/src/Classic/FixedAlgebra/TransportMath.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Main.cpp b/src/Classic/Main.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/MemoryManagement/CMakeLists.txt b/src/Classic/MemoryManagement/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/MemoryManagement/OwnPtr.h b/src/Classic/MemoryManagement/OwnPtr.h
old mode 100755
new mode 100644
diff --git a/src/Classic/MemoryManagement/Pointer.h b/src/Classic/MemoryManagement/Pointer.h
old mode 100755
new mode 100644
diff --git a/src/Classic/MemoryManagement/RCObject.h b/src/Classic/MemoryManagement/RCObject.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/AbsFileStream.cpp b/src/Classic/Parser/AbsFileStream.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/AbsFileStream.h b/src/Classic/Parser/AbsFileStream.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/CMakeLists.txt b/src/Classic/Parser/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/FileStream.cpp b/src/Classic/Parser/FileStream.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/FileStream.h b/src/Classic/Parser/FileStream.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/Parser.h b/src/Classic/Parser/Parser.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/SimpleStatement.cpp b/src/Classic/Parser/SimpleStatement.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/SimpleStatement.h b/src/Classic/Parser/SimpleStatement.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/Statement.cpp b/src/Classic/Parser/Statement.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/Statement.h b/src/Classic/Parser/Statement.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/StringStream.cpp b/src/Classic/Parser/StringStream.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/StringStream.h b/src/Classic/Parser/StringStream.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/TerminalStream.cpp b/src/Classic/Parser/TerminalStream.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/TerminalStream.h b/src/Classic/Parser/TerminalStream.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/Token.cpp b/src/Classic/Parser/Token.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/Token.h b/src/Classic/Parser/Token.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/TokenStream.cpp b/src/Classic/Parser/TokenStream.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Parser/TokenStream.h b/src/Classic/Parser/TokenStream.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Physics/CMakeLists.txt b/src/Classic/Physics/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Physics/Physics.h b/src/Classic/Physics/Physics.h
old mode 100755
new mode 100644
diff --git a/src/Classic/ReadMe b/src/Classic/ReadMe
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CMakeLists.txt b/src/Classic/Solvers/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CSRIGFWakeFunction.cpp b/src/Classic/Solvers/CSRIGFWakeFunction.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CSRIGFWakeFunction.hh b/src/Classic/Solvers/CSRIGFWakeFunction.hh
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CSRWakeFunction.cpp b/src/Classic/Solvers/CSRWakeFunction.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CSRWakeFunction.hh b/src/Classic/Solvers/CSRWakeFunction.hh
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CollimatorPhysics.cpp b/src/Classic/Solvers/CollimatorPhysics.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/CollimatorPhysics.hh b/src/Classic/Solvers/CollimatorPhysics.hh
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/GreenWakeFunction.cpp b/src/Classic/Solvers/GreenWakeFunction.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/GreenWakeFunction.hh b/src/Classic/Solvers/GreenWakeFunction.hh
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/ParticleMatterInteractionHandler.hh b/src/Classic/Solvers/ParticleMatterInteractionHandler.hh
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/TestLambda.h b/src/Classic/Solvers/TestLambda.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Solvers/WakeFunction.hh b/src/Classic/Solvers/WakeFunction.hh
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/CMakeLists.txt b/src/Classic/Structure/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/LossDataSink.cpp b/src/Classic/Structure/LossDataSink.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/LossDataSink.h b/src/Classic/Structure/LossDataSink.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/MeshGenerator.cpp b/src/Classic/Structure/MeshGenerator.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/MeshGenerator.h b/src/Classic/Structure/MeshGenerator.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/PeakFinder.cpp b/src/Classic/Structure/PeakFinder.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Structure/PeakFinder.h b/src/Classic/Structure/PeakFinder.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ArithmeticError.cpp b/src/Classic/Utilities/ArithmeticError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ArithmeticError.h b/src/Classic/Utilities/ArithmeticError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/AttributeError.cpp b/src/Classic/Utilities/AttributeError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/AttributeError.h b/src/Classic/Utilities/AttributeError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/CLRangeError.cpp b/src/Classic/Utilities/CLRangeError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/CLRangeError.h b/src/Classic/Utilities/CLRangeError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/CMakeLists.txt b/src/Classic/Utilities/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ClassicException.cpp b/src/Classic/Utilities/ClassicException.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ClassicException.h b/src/Classic/Utilities/ClassicException.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ClassicField.cpp b/src/Classic/Utilities/ClassicField.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ClassicField.h b/src/Classic/Utilities/ClassicField.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ClassicRandom.cpp b/src/Classic/Utilities/ClassicRandom.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ClassicRandom.h b/src/Classic/Utilities/ClassicRandom.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ComplexErrorFun.cpp b/src/Classic/Utilities/ComplexErrorFun.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ComplexErrorFun.h b/src/Classic/Utilities/ComplexErrorFun.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ConvergenceError.cpp b/src/Classic/Utilities/ConvergenceError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ConvergenceError.h b/src/Classic/Utilities/ConvergenceError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/DivideError.cpp b/src/Classic/Utilities/DivideError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/DivideError.h b/src/Classic/Utilities/DivideError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/DomainError.cpp b/src/Classic/Utilities/DomainError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/DomainError.h b/src/Classic/Utilities/DomainError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/EigenvalueError.cpp b/src/Classic/Utilities/EigenvalueError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/EigenvalueError.h b/src/Classic/Utilities/EigenvalueError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/FormatError.cpp b/src/Classic/Utilities/FormatError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/FormatError.h b/src/Classic/Utilities/FormatError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/Gauss.cpp b/src/Classic/Utilities/Gauss.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/Gauss.h b/src/Classic/Utilities/Gauss.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/GeneralClassicException.cpp b/src/Classic/Utilities/GeneralClassicException.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/GeneralClassicException.h b/src/Classic/Utilities/GeneralClassicException.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/InverseGauss.cpp b/src/Classic/Utilities/InverseGauss.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/InverseGauss.h b/src/Classic/Utilities/InverseGauss.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/LogicalError.cpp b/src/Classic/Utilities/LogicalError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/LogicalError.h b/src/Classic/Utilities/LogicalError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/NormalFormError.cpp b/src/Classic/Utilities/NormalFormError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/NormalFormError.h b/src/Classic/Utilities/NormalFormError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/OptionTypes.h b/src/Classic/Utilities/OptionTypes.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/Options.cpp b/src/Classic/Utilities/Options.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/Options.h b/src/Classic/Utilities/Options.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/OverflowError.cpp b/src/Classic/Utilities/OverflowError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/OverflowError.h b/src/Classic/Utilities/OverflowError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ParseError.cpp b/src/Classic/Utilities/ParseError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/ParseError.h b/src/Classic/Utilities/ParseError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/RingSection.cpp b/src/Classic/Utilities/RingSection.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/RingSection.h b/src/Classic/Utilities/RingSection.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/SingularMatrixError.cpp b/src/Classic/Utilities/SingularMatrixError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/SingularMatrixError.h b/src/Classic/Utilities/SingularMatrixError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/SizeError.cpp b/src/Classic/Utilities/SizeError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/SizeError.h b/src/Classic/Utilities/SizeError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/SwitcherError.cpp b/src/Classic/Utilities/SwitcherError.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/SwitcherError.h b/src/Classic/Utilities/SwitcherError.h
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/Util.cpp b/src/Classic/Utilities/Util.cpp
old mode 100755
new mode 100644
diff --git a/src/Classic/Utilities/Util.h b/src/Classic/Utilities/Util.h
old mode 100755
new mode 100644
diff --git a/src/Classic/autogen-gele.sh b/src/Classic/autogen-gele.sh
old mode 100755
new mode 100644
diff --git a/src/Classic/autogen-palu.sh b/src/Classic/autogen-palu.sh
old mode 100755
new mode 100644
diff --git a/src/Classic/autogen-regression.sh b/src/Classic/autogen-regression.sh
old mode 100755
new mode 100644
diff --git a/src/Classic/autogen.sh b/src/Classic/autogen.sh
old mode 100755
new mode 100644
diff --git a/src/Classic/configure.ac b/src/Classic/configure.ac
old mode 100755
new mode 100644
diff --git a/src/Copyright.readme b/src/Copyright.readme
old mode 100755
new mode 100644
diff --git a/src/Distribution/CMakeLists.txt b/src/Distribution/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Distribution/ClosedOrbitFinder.h b/src/Distribution/ClosedOrbitFinder.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/Distribution.cpp b/src/Distribution/Distribution.cpp
old mode 100755
new mode 100644
diff --git a/src/Distribution/Distribution.h b/src/Distribution/Distribution.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/Harmonics.h b/src/Distribution/Harmonics.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/LaserProfile.cpp b/src/Distribution/LaserProfile.cpp
old mode 100755
new mode 100644
diff --git a/src/Distribution/LaserProfile.h b/src/Distribution/LaserProfile.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/MagneticField.cpp b/src/Distribution/MagneticField.cpp
old mode 100755
new mode 100644
diff --git a/src/Distribution/MagneticField.h b/src/Distribution/MagneticField.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/MapGenerator.h b/src/Distribution/MapGenerator.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/SigmaGenerator.h b/src/Distribution/SigmaGenerator.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/halton1d_sequence.cpp b/src/Distribution/halton1d_sequence.cpp
old mode 100755
new mode 100644
diff --git a/src/Distribution/halton1d_sequence.hh b/src/Distribution/halton1d_sequence.hh
old mode 100755
new mode 100644
diff --git a/src/Distribution/matrix_vector_operation.h b/src/Distribution/matrix_vector_operation.h
old mode 100755
new mode 100644
diff --git a/src/Distribution/rdm.h b/src/Distribution/rdm.h
old mode 100755
new mode 100644
diff --git a/src/Editor/CMakeLists.txt b/src/Editor/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Editor/Edit.cpp b/src/Editor/Edit.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/Edit.h b/src/Editor/Edit.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditCmd.cpp b/src/Editor/EditCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditCmd.h b/src/Editor/EditCmd.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditCycle.cpp b/src/Editor/EditCycle.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditCycle.h b/src/Editor/EditCycle.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditEnd.cpp b/src/Editor/EditEnd.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditEnd.h b/src/Editor/EditEnd.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditFlatten.cpp b/src/Editor/EditFlatten.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditFlatten.h b/src/Editor/EditFlatten.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditInstall.cpp b/src/Editor/EditInstall.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditInstall.h b/src/Editor/EditInstall.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditMove.cpp b/src/Editor/EditMove.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditMove.h b/src/Editor/EditMove.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditParser.cpp b/src/Editor/EditParser.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditParser.h b/src/Editor/EditParser.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditReflect.cpp b/src/Editor/EditReflect.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditReflect.h b/src/Editor/EditReflect.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditRemove.cpp b/src/Editor/EditRemove.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditRemove.h b/src/Editor/EditRemove.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditReplace.cpp b/src/Editor/EditReplace.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditReplace.h b/src/Editor/EditReplace.h
old mode 100755
new mode 100644
diff --git a/src/Editor/EditSelect.cpp b/src/Editor/EditSelect.cpp
old mode 100755
new mode 100644
diff --git a/src/Editor/EditSelect.h b/src/Editor/EditSelect.h
old mode 100755
new mode 100644
diff --git a/src/Elements/AttCell.cpp b/src/Elements/AttCell.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/AttCell.h b/src/Elements/AttCell.h
old mode 100755
new mode 100644
diff --git a/src/Elements/CMakeLists.txt b/src/Elements/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBeamBeam.cpp b/src/Elements/OpalBeamBeam.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBeamBeam.h b/src/Elements/OpalBeamBeam.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBeamBeam3D.cpp b/src/Elements/OpalBeamBeam3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBeamBeam3D.h b/src/Elements/OpalBeamBeam3D.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBeamline.cpp b/src/Elements/OpalBeamline.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBeamline.h b/src/Elements/OpalBeamline.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBend.cpp b/src/Elements/OpalBend.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalBend.h b/src/Elements/OpalBend.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCCollimator.cpp b/src/Elements/OpalCCollimator.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCCollimator.h b/src/Elements/OpalCCollimator.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCavity.cpp b/src/Elements/OpalCavity.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCavity.h b/src/Elements/OpalCavity.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCyclotron.cpp b/src/Elements/OpalCyclotron.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCyclotron.h b/src/Elements/OpalCyclotron.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCyclotronValley.cpp b/src/Elements/OpalCyclotronValley.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalCyclotronValley.h b/src/Elements/OpalCyclotronValley.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalDegrader.cpp b/src/Elements/OpalDegrader.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalDegrader.h b/src/Elements/OpalDegrader.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalDrift.cpp b/src/Elements/OpalDrift.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalDrift.h b/src/Elements/OpalDrift.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalECollimator.cpp b/src/Elements/OpalECollimator.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalECollimator.h b/src/Elements/OpalECollimator.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalElement.cpp b/src/Elements/OpalElement.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalElement.h b/src/Elements/OpalElement.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalHKicker.cpp b/src/Elements/OpalHKicker.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalHKicker.h b/src/Elements/OpalHKicker.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalHMonitor.cpp b/src/Elements/OpalHMonitor.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalHMonitor.h b/src/Elements/OpalHMonitor.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalInstrument.cpp b/src/Elements/OpalInstrument.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalInstrument.h b/src/Elements/OpalInstrument.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalKicker.cpp b/src/Elements/OpalKicker.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalKicker.h b/src/Elements/OpalKicker.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMarker.cpp b/src/Elements/OpalMarker.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMarker.h b/src/Elements/OpalMarker.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMonitor.cpp b/src/Elements/OpalMonitor.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMonitor.h b/src/Elements/OpalMonitor.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMultipole.cpp b/src/Elements/OpalMultipole.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMultipole.h b/src/Elements/OpalMultipole.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMultipoleT.cpp b/src/Elements/OpalMultipoleT.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalMultipoleT.h b/src/Elements/OpalMultipoleT.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOctupole.cpp b/src/Elements/OpalOctupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOctupole.h b/src/Elements/OpalOctupole.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalGlobalCartesianOffset.cpp b/src/Elements/OpalOffset/OpalGlobalCartesianOffset.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalGlobalCartesianOffset.h b/src/Elements/OpalOffset/OpalGlobalCartesianOffset.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.cpp b/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.h b/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalLocalCartesianOffset.cpp b/src/Elements/OpalOffset/OpalLocalCartesianOffset.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalLocalCartesianOffset.h b/src/Elements/OpalOffset/OpalLocalCartesianOffset.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalLocalCylindricalOffset.cpp b/src/Elements/OpalOffset/OpalLocalCylindricalOffset.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalOffset/OpalLocalCylindricalOffset.h b/src/Elements/OpalOffset/OpalLocalCylindricalOffset.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalParallelPlate.cpp b/src/Elements/OpalParallelPlate.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalParallelPlate.h b/src/Elements/OpalParallelPlate.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalPatch.cpp b/src/Elements/OpalPatch.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalPatch.h b/src/Elements/OpalPatch.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalPepperPot.cpp b/src/Elements/OpalPepperPot.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalPepperPot.h b/src/Elements/OpalPepperPot.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalPolynomialTimeDependence.cpp b/src/Elements/OpalPolynomialTimeDependence.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalPolynomialTimeDependence.h b/src/Elements/OpalPolynomialTimeDependence.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalProbe.cpp b/src/Elements/OpalProbe.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalProbe.h b/src/Elements/OpalProbe.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalQuadrupole.cpp b/src/Elements/OpalQuadrupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalQuadrupole.h b/src/Elements/OpalQuadrupole.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRBend.cpp b/src/Elements/OpalRBend.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRBend.h b/src/Elements/OpalRBend.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRBend3D.cpp b/src/Elements/OpalRBend3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRBend3D.h b/src/Elements/OpalRBend3D.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRCollimator.cpp b/src/Elements/OpalRCollimator.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRCollimator.h b/src/Elements/OpalRCollimator.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRingDefinition.cpp b/src/Elements/OpalRingDefinition.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalRingDefinition.h b/src/Elements/OpalRingDefinition.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSBend.cpp b/src/Elements/OpalSBend.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSBend.h b/src/Elements/OpalSBend.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSBend3D.cpp b/src/Elements/OpalSBend3D.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSBend3D.h b/src/Elements/OpalSBend3D.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSRot.cpp b/src/Elements/OpalSRot.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSRot.h b/src/Elements/OpalSRot.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalScalingFFAGMagnet.cpp b/src/Elements/OpalScalingFFAGMagnet.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalScalingFFAGMagnet.h b/src/Elements/OpalScalingFFAGMagnet.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSeparator.cpp b/src/Elements/OpalSeparator.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSeparator.h b/src/Elements/OpalSeparator.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSeptum.cpp b/src/Elements/OpalSeptum.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSeptum.h b/src/Elements/OpalSeptum.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSextupole.cpp b/src/Elements/OpalSextupole.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSextupole.h b/src/Elements/OpalSextupole.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSlit.cpp b/src/Elements/OpalSlit.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSlit.h b/src/Elements/OpalSlit.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSolenoid.cpp b/src/Elements/OpalSolenoid.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSolenoid.h b/src/Elements/OpalSolenoid.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSource.cpp b/src/Elements/OpalSource.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalSource.h b/src/Elements/OpalSource.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalStripper.cpp b/src/Elements/OpalStripper.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalStripper.h b/src/Elements/OpalStripper.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalTravelingWave.cpp b/src/Elements/OpalTravelingWave.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalTravelingWave.h b/src/Elements/OpalTravelingWave.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalVKicker.cpp b/src/Elements/OpalVKicker.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalVKicker.h b/src/Elements/OpalVKicker.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalVMonitor.cpp b/src/Elements/OpalVMonitor.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalVMonitor.h b/src/Elements/OpalVMonitor.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalVariableRFCavity.cpp b/src/Elements/OpalVariableRFCavity.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalVariableRFCavity.h b/src/Elements/OpalVariableRFCavity.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalWire.cpp b/src/Elements/OpalWire.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalWire.h b/src/Elements/OpalWire.h
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalYRot.cpp b/src/Elements/OpalYRot.cpp
old mode 100755
new mode 100644
diff --git a/src/Elements/OpalYRot.h b/src/Elements/OpalYRot.h
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignBase.cpp b/src/Errors/AlignBase.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignBase.h b/src/Errors/AlignBase.h
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignHandler.cpp b/src/Errors/AlignHandler.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignHandler.h b/src/Errors/AlignHandler.h
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignReader.cpp b/src/Errors/AlignReader.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignReader.h b/src/Errors/AlignReader.h
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignRemover.cpp b/src/Errors/AlignRemover.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignRemover.h b/src/Errors/AlignRemover.h
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignWriter.cpp b/src/Errors/AlignWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/AlignWriter.h b/src/Errors/AlignWriter.h
old mode 100755
new mode 100644
diff --git a/src/Errors/CMakeLists.txt b/src/Errors/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Errors/Error.cpp b/src/Errors/Error.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/Error.h b/src/Errors/Error.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorAlign.cpp b/src/Errors/ErrorAlign.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorAlign.h b/src/Errors/ErrorAlign.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorCmd.cpp b/src/Errors/ErrorCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorCmd.h b/src/Errors/ErrorCmd.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorComp.cpp b/src/Errors/ErrorComp.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorComp.h b/src/Errors/ErrorComp.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorEnd.cpp b/src/Errors/ErrorEnd.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorEnd.h b/src/Errors/ErrorEnd.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorField.cpp b/src/Errors/ErrorField.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorField.h b/src/Errors/ErrorField.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorParser.cpp b/src/Errors/ErrorParser.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorParser.h b/src/Errors/ErrorParser.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorPrint.cpp b/src/Errors/ErrorPrint.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorPrint.h b/src/Errors/ErrorPrint.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorSave.cpp b/src/Errors/ErrorSave.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorSave.h b/src/Errors/ErrorSave.h
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorSelect.cpp b/src/Errors/ErrorSelect.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/ErrorSelect.h b/src/Errors/ErrorSelect.h
old mode 100755
new mode 100644
diff --git a/src/Errors/MPBase.cpp b/src/Errors/MPBase.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/MPBase.h b/src/Errors/MPBase.h
old mode 100755
new mode 100644
diff --git a/src/Errors/MPHandler.cpp b/src/Errors/MPHandler.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/MPHandler.h b/src/Errors/MPHandler.h
old mode 100755
new mode 100644
diff --git a/src/Errors/MPReader.cpp b/src/Errors/MPReader.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/MPReader.h b/src/Errors/MPReader.h
old mode 100755
new mode 100644
diff --git a/src/Errors/MPRemover.cpp b/src/Errors/MPRemover.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/MPRemover.h b/src/Errors/MPRemover.h
old mode 100755
new mode 100644
diff --git a/src/Errors/MPWriter.cpp b/src/Errors/MPWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Errors/MPWriter.h b/src/Errors/MPWriter.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/AAutomatic.h b/src/Expressions/AAutomatic.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ABinary.h b/src/Expressions/ABinary.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/AColumn.cpp b/src/Expressions/AColumn.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/AColumn.h b/src/Expressions/AColumn.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ADeferred.h b/src/Expressions/ADeferred.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/AList.h b/src/Expressions/AList.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ARefAttr.h b/src/Expressions/ARefAttr.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ARefExpr.h b/src/Expressions/ARefExpr.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ARow.cpp b/src/Expressions/ARow.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/ARow.h b/src/Expressions/ARow.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ASUnary.h b/src/Expressions/ASUnary.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/ATable.cpp b/src/Expressions/ATable.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/ATable.h b/src/Expressions/ATable.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/AUnary.h b/src/Expressions/AUnary.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/AValue.h b/src/Expressions/AValue.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/CMakeLists.txt b/src/Expressions/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Expressions/Expressions.cpp b/src/Expressions/Expressions.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/Expressions.h b/src/Expressions/Expressions.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/Indexer.h b/src/Expressions/Indexer.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SAutomatic.h b/src/Expressions/SAutomatic.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SBinary.h b/src/Expressions/SBinary.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SCell.cpp b/src/Expressions/SCell.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/SCell.h b/src/Expressions/SCell.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SConstant.h b/src/Expressions/SConstant.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SDeferred.h b/src/Expressions/SDeferred.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SFunction.cpp b/src/Expressions/SFunction.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/SFunction.h b/src/Expressions/SFunction.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SHash.cpp b/src/Expressions/SHash.cpp
old mode 100755
new mode 100644
diff --git a/src/Expressions/SHash.h b/src/Expressions/SHash.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SNull.h b/src/Expressions/SNull.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SRefAttr.h b/src/Expressions/SRefAttr.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SRefExpr.h b/src/Expressions/SRefExpr.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SUnary.h b/src/Expressions/SUnary.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/SValue.h b/src/Expressions/SValue.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/TFind.h b/src/Expressions/TFind.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/TFunction0.h b/src/Expressions/TFunction0.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/TFunction1.h b/src/Expressions/TFunction1.h
old mode 100755
new mode 100644
diff --git a/src/Expressions/TFunction2.h b/src/Expressions/TFunction2.h
old mode 100755
new mode 100644
diff --git a/src/Lines/CMakeLists.txt b/src/Lines/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Lines/FlatWriter.cpp b/src/Lines/FlatWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/FlatWriter.h b/src/Lines/FlatWriter.h
old mode 100755
new mode 100644
diff --git a/src/Lines/Line.cpp b/src/Lines/Line.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/Line.h b/src/Lines/Line.h
old mode 100755
new mode 100644
diff --git a/src/Lines/LineTemplate.cpp b/src/Lines/LineTemplate.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/LineTemplate.h b/src/Lines/LineTemplate.h
old mode 100755
new mode 100644
diff --git a/src/Lines/Replacer.cpp b/src/Lines/Replacer.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/Replacer.h b/src/Lines/Replacer.h
old mode 100755
new mode 100644
diff --git a/src/Lines/Sequence.cpp b/src/Lines/Sequence.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/Sequence.h b/src/Lines/Sequence.h
old mode 100755
new mode 100644
diff --git a/src/Lines/SequenceMember.cpp b/src/Lines/SequenceMember.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/SequenceMember.h b/src/Lines/SequenceMember.h
old mode 100755
new mode 100644
diff --git a/src/Lines/SequenceParser.cpp b/src/Lines/SequenceParser.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/SequenceParser.h b/src/Lines/SequenceParser.h
old mode 100755
new mode 100644
diff --git a/src/Lines/SequenceTemplate.cpp b/src/Lines/SequenceTemplate.cpp
old mode 100755
new mode 100644
diff --git a/src/Lines/SequenceTemplate.h b/src/Lines/SequenceTemplate.h
old mode 100755
new mode 100644
diff --git a/src/Main.cpp b/src/Main.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/AbstractFun.cpp b/src/Match/AbstractFun.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/AbstractFun.h b/src/Match/AbstractFun.h
old mode 100755
new mode 100644
diff --git a/src/Match/AbstractVar.cpp b/src/Match/AbstractVar.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/AbstractVar.h b/src/Match/AbstractVar.h
old mode 100755
new mode 100644
diff --git a/src/Match/CMakeLists.txt b/src/Match/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Match/ConcreteFun.cpp b/src/Match/ConcreteFun.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/ConcreteFun.h b/src/Match/ConcreteFun.h
old mode 100755
new mode 100644
diff --git a/src/Match/ConcreteVar.cpp b/src/Match/ConcreteVar.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/ConcreteVar.h b/src/Match/ConcreteVar.h
old mode 100755
new mode 100644
diff --git a/src/Match/ConstraintCmd.cpp b/src/Match/ConstraintCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/ConstraintCmd.h b/src/Match/ConstraintCmd.h
old mode 100755
new mode 100644
diff --git a/src/Match/LMDif.cpp b/src/Match/LMDif.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/LMDif.h b/src/Match/LMDif.h
old mode 100755
new mode 100644
diff --git a/src/Match/Match.cpp b/src/Match/Match.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/Match.h b/src/Match/Match.h
old mode 100755
new mode 100644
diff --git a/src/Match/MatchCmd.cpp b/src/Match/MatchCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/MatchCmd.h b/src/Match/MatchCmd.h
old mode 100755
new mode 100644
diff --git a/src/Match/MatchEnd.cpp b/src/Match/MatchEnd.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/MatchEnd.h b/src/Match/MatchEnd.h
old mode 100755
new mode 100644
diff --git a/src/Match/MatchLimits.h b/src/Match/MatchLimits.h
old mode 100755
new mode 100644
diff --git a/src/Match/MatchOption.cpp b/src/Match/MatchOption.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/MatchOption.h b/src/Match/MatchOption.h
old mode 100755
new mode 100644
diff --git a/src/Match/MatchParser.cpp b/src/Match/MatchParser.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/MatchParser.h b/src/Match/MatchParser.h
old mode 100755
new mode 100644
diff --git a/src/Match/MatchState.h b/src/Match/MatchState.h
old mode 100755
new mode 100644
diff --git a/src/Match/Migrad.cpp b/src/Match/Migrad.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/Migrad.h b/src/Match/Migrad.h
old mode 100755
new mode 100644
diff --git a/src/Match/Simplex.cpp b/src/Match/Simplex.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/Simplex.h b/src/Match/Simplex.h
old mode 100755
new mode 100644
diff --git a/src/Match/VaryCmd.cpp b/src/Match/VaryCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Match/VaryCmd.h b/src/Match/VaryCmd.h
old mode 100755
new mode 100644
diff --git a/src/OpalConfigure/CMakeLists.txt b/src/OpalConfigure/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/OpalConfigure/Configure.cpp b/src/OpalConfigure/Configure.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalConfigure/Configure.h b/src/OpalConfigure/Configure.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/CMakeLists.txt b/src/OpalParser/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/OpalParser/CompoundStatement.cpp b/src/OpalParser/CompoundStatement.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/CompoundStatement.h b/src/OpalParser/CompoundStatement.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/IfStatement.cpp b/src/OpalParser/IfStatement.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/IfStatement.h b/src/OpalParser/IfStatement.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/Macro.cpp b/src/OpalParser/Macro.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/Macro.h b/src/OpalParser/Macro.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/MacroCmd.cpp b/src/OpalParser/MacroCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/MacroCmd.h b/src/OpalParser/MacroCmd.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/MacroStream.cpp b/src/OpalParser/MacroStream.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/MacroStream.h b/src/OpalParser/MacroStream.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/OpalParser.cpp b/src/OpalParser/OpalParser.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/OpalParser.h b/src/OpalParser/OpalParser.h
old mode 100755
new mode 100644
diff --git a/src/OpalParser/WhileStatement.cpp b/src/OpalParser/WhileStatement.cpp
old mode 100755
new mode 100644
diff --git a/src/OpalParser/WhileStatement.h b/src/OpalParser/WhileStatement.h
old mode 100755
new mode 100644
diff --git a/src/Optimize/CMakeLists.txt b/src/Optimize/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Optimize/Constraint.cpp b/src/Optimize/Constraint.cpp
old mode 100755
new mode 100644
diff --git a/src/Optimize/Constraint.h b/src/Optimize/Constraint.h
old mode 100755
new mode 100644
diff --git a/src/Optimize/DVar.cpp b/src/Optimize/DVar.cpp
old mode 100755
new mode 100644
diff --git a/src/Optimize/DVar.h b/src/Optimize/DVar.h
old mode 100755
new mode 100644
diff --git a/src/Optimize/Objective.cpp b/src/Optimize/Objective.cpp
old mode 100755
new mode 100644
diff --git a/src/Optimize/Objective.h b/src/Optimize/Objective.h
old mode 100755
new mode 100644
diff --git a/src/Optimize/OpalSimulation.cpp b/src/Optimize/OpalSimulation.cpp
old mode 100755
new mode 100644
diff --git a/src/Optimize/OpalSimulation.h b/src/Optimize/OpalSimulation.h
old mode 100755
new mode 100644
diff --git a/src/Optimize/OptimizeCmd.cpp b/src/Optimize/OptimizeCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Optimize/OptimizeCmd.h b/src/Optimize/OptimizeCmd.h
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/CMakeLists.txt b/src/PhysicsActions/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/Dynamic.cpp b/src/PhysicsActions/Dynamic.cpp
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/Dynamic.h b/src/PhysicsActions/Dynamic.h
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/MakeSequence.cpp b/src/PhysicsActions/MakeSequence.cpp
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/MakeSequence.h b/src/PhysicsActions/MakeSequence.h
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/SetIntegrator.cpp b/src/PhysicsActions/SetIntegrator.cpp
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/SetIntegrator.h b/src/PhysicsActions/SetIntegrator.h
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/Static.cpp b/src/PhysicsActions/Static.cpp
old mode 100755
new mode 100644
diff --git a/src/PhysicsActions/Static.h b/src/PhysicsActions/Static.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/Amesos2BottomSolver.h b/src/Solvers/AMR_MG/Amesos2BottomSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/Amesos2BottomSolver.hpp b/src/Solvers/AMR_MG/Amesos2BottomSolver.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrBoundary.h b/src/Solvers/AMR_MG/AmrBoundary.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrDirichletBoundary.h b/src/Solvers/AMR_MG/AmrDirichletBoundary.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrInterpolater.h b/src/Solvers/AMR_MG/AmrInterpolater.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrLagrangeInterpolater.h b/src/Solvers/AMR_MG/AmrLagrangeInterpolater.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrLagrangeInterpolater.hpp b/src/Solvers/AMR_MG/AmrLagrangeInterpolater.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrMultiGrid.cpp b/src/Solvers/AMR_MG/AmrMultiGrid.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrMultiGrid.h b/src/Solvers/AMR_MG/AmrMultiGrid.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrMultiGridCore.h b/src/Solvers/AMR_MG/AmrMultiGridCore.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrMultiGridDefs.h b/src/Solvers/AMR_MG/AmrMultiGridDefs.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrMultiGridLevel.h b/src/Solvers/AMR_MG/AmrMultiGridLevel.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrMultiGridLevel.hpp b/src/Solvers/AMR_MG/AmrMultiGridLevel.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrOpenBoundary.h b/src/Solvers/AMR_MG/AmrOpenBoundary.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrPCInterpolater.h b/src/Solvers/AMR_MG/AmrPCInterpolater.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrPCInterpolater.hpp b/src/Solvers/AMR_MG/AmrPCInterpolater.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrPeriodicBoundary.h b/src/Solvers/AMR_MG/AmrPeriodicBoundary.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrPreconditioner.h b/src/Solvers/AMR_MG/AmrPreconditioner.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrSmoother.cpp b/src/Solvers/AMR_MG/AmrSmoother.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrSmoother.h b/src/Solvers/AMR_MG/AmrSmoother.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrTrilinearInterpolater.h b/src/Solvers/AMR_MG/AmrTrilinearInterpolater.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/AmrTrilinearInterpolater.hpp b/src/Solvers/AMR_MG/AmrTrilinearInterpolater.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/BelosBottomSolver.h b/src/Solvers/AMR_MG/BelosBottomSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/BelosBottomSolver.hpp b/src/Solvers/AMR_MG/BelosBottomSolver.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/BottomSolver.h b/src/Solvers/AMR_MG/BottomSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/CMakeLists.txt b/src/Solvers/AMR_MG/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/Ifpack2Preconditioner.h b/src/Solvers/AMR_MG/Ifpack2Preconditioner.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp b/src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/MueLuBottomSolver.h b/src/Solvers/AMR_MG/MueLuBottomSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/MueLuBottomSolver.hpp b/src/Solvers/AMR_MG/MueLuBottomSolver.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/MueLuPreconditioner.h b/src/Solvers/AMR_MG/MueLuPreconditioner.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/AMR_MG/MueLuPreconditioner.hpp b/src/Solvers/AMR_MG/MueLuPreconditioner.hpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/AmrPoissonSolver.h b/src/Solvers/AmrPoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/ArbitraryDomain.cpp b/src/Solvers/ArbitraryDomain.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/ArbitraryDomain.h b/src/Solvers/ArbitraryDomain.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/BoxCornerDomain.cpp b/src/Solvers/BoxCornerDomain.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/BoxCornerDomain.h b/src/Solvers/BoxCornerDomain.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/BoxLibSolvers/FMGPoissonSolver.cpp b/src/Solvers/BoxLibSolvers/FMGPoissonSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/BoxLibSolvers/FMGPoissonSolver.h b/src/Solvers/BoxLibSolvers/FMGPoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/CMakeLists.txt b/src/Solvers/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Solvers/EllipticDomain.cpp b/src/Solvers/EllipticDomain.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/EllipticDomain.h b/src/Solvers/EllipticDomain.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/FFTBoxPoissonSolver.cpp b/src/Solvers/FFTBoxPoissonSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/FFTBoxPoissonSolver.h b/src/Solvers/FFTBoxPoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/FFTPoissonSolver.cpp b/src/Solvers/FFTPoissonSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/FFTPoissonSolver.h b/src/Solvers/FFTPoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/IrregularDomain.h b/src/Solvers/IrregularDomain.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/MGPoissonSolver.cpp b/src/Solvers/MGPoissonSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/MGPoissonSolver.h b/src/Solvers/MGPoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/P3MPoissonSolver.cpp b/src/Solvers/P3MPoissonSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/P3MPoissonSolver.h b/src/Solvers/P3MPoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/PoissonSolver.h b/src/Solvers/PoissonSolver.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/RectangularDomain.cpp b/src/Solvers/RectangularDomain.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/RectangularDomain.h b/src/Solvers/RectangularDomain.h
old mode 100755
new mode 100644
diff --git a/src/Solvers/TaperDomain.cpp b/src/Solvers/TaperDomain.cpp
old mode 100755
new mode 100644
diff --git a/src/Solvers/TaperDomain.h b/src/Solvers/TaperDomain.h
old mode 100755
new mode 100644
diff --git a/src/Steppers/BorisPusher.h b/src/Steppers/BorisPusher.h
old mode 100755
new mode 100644
diff --git a/src/Steppers/CMakeLists.txt b/src/Steppers/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Steppers/LF2.h b/src/Steppers/LF2.h
old mode 100755
new mode 100644
diff --git a/src/Steppers/LF2.hpp b/src/Steppers/LF2.hpp
old mode 100755
new mode 100644
diff --git a/src/Steppers/RK4.h b/src/Steppers/RK4.h
old mode 100755
new mode 100644
diff --git a/src/Steppers/RK4.hpp b/src/Steppers/RK4.hpp
old mode 100755
new mode 100644
diff --git a/src/Steppers/Stepper.h b/src/Steppers/Stepper.h
old mode 100755
new mode 100644
diff --git a/src/Steppers/Steppers.h b/src/Steppers/Steppers.h
old mode 100755
new mode 100644
diff --git a/src/Structure/Beam.cpp b/src/Structure/Beam.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/Beam.h b/src/Structure/Beam.h
old mode 100755
new mode 100644
diff --git a/src/Structure/BoundaryGeometry.cpp b/src/Structure/BoundaryGeometry.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/BoundaryGeometry.h b/src/Structure/BoundaryGeometry.h
old mode 100755
new mode 100644
diff --git a/src/Structure/CMakeLists.txt b/src/Structure/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Structure/DataSink.cpp b/src/Structure/DataSink.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/DataSink.h b/src/Structure/DataSink.h
old mode 100755
new mode 100644
diff --git a/src/Structure/FieldSolver.cpp b/src/Structure/FieldSolver.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/FieldSolver.h b/src/Structure/FieldSolver.h
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapper.cpp b/src/Structure/H5PartWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapper.h b/src/Structure/H5PartWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapperForPC.cpp b/src/Structure/H5PartWrapperForPC.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapperForPC.h b/src/Structure/H5PartWrapperForPC.h
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapperForPS.cpp b/src/Structure/H5PartWrapperForPS.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapperForPS.h b/src/Structure/H5PartWrapperForPS.h
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapperForPT.cpp b/src/Structure/H5PartWrapperForPT.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/H5PartWrapperForPT.h b/src/Structure/H5PartWrapperForPT.h
old mode 100755
new mode 100644
diff --git a/src/Structure/IpplInfoWrapper.cpp b/src/Structure/IpplInfoWrapper.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/IpplInfoWrapper.h b/src/Structure/IpplInfoWrapper.h
old mode 100755
new mode 100644
diff --git a/src/Structure/OpalInputInterpreter.cpp b/src/Structure/OpalInputInterpreter.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/OpalInputInterpreter.h b/src/Structure/OpalInputInterpreter.h
old mode 100755
new mode 100644
diff --git a/src/Structure/OpalWake.cpp b/src/Structure/OpalWake.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/OpalWake.h b/src/Structure/OpalWake.h
old mode 100755
new mode 100644
diff --git a/src/Structure/ParticleMatterInteraction.cpp b/src/Structure/ParticleMatterInteraction.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/ParticleMatterInteraction.h b/src/Structure/ParticleMatterInteraction.h
old mode 100755
new mode 100644
diff --git a/src/Structure/PriEmissionPhysics.cpp b/src/Structure/PriEmissionPhysics.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/PriEmissionPhysics.h b/src/Structure/PriEmissionPhysics.h
old mode 100755
new mode 100644
diff --git a/src/Structure/SecondaryEmissionPhysics.cpp b/src/Structure/SecondaryEmissionPhysics.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/SecondaryEmissionPhysics.h b/src/Structure/SecondaryEmissionPhysics.h
old mode 100755
new mode 100644
diff --git a/src/Structure/TracerParticles.cpp b/src/Structure/TracerParticles.cpp
old mode 100755
new mode 100644
diff --git a/src/Structure/TracerParticles.hpp b/src/Structure/TracerParticles.hpp
old mode 100755
new mode 100644
diff --git a/src/Tables/AttList.cpp b/src/Tables/AttList.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/AttList.h b/src/Tables/AttList.h
old mode 100755
new mode 100644
diff --git a/src/Tables/AttWriter.cpp b/src/Tables/AttWriter.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/AttWriter.h b/src/Tables/AttWriter.h
old mode 100755
new mode 100644
diff --git a/src/Tables/CMakeLists.txt b/src/Tables/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Tables/CorrectionBase.cpp b/src/Tables/CorrectionBase.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/CorrectionBase.h b/src/Tables/CorrectionBase.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Eigen.cpp b/src/Tables/Eigen.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Eigen.h b/src/Tables/Eigen.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Envelope.cpp b/src/Tables/Envelope.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Envelope.h b/src/Tables/Envelope.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Flatten.h b/src/Tables/Flatten.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Insertion.cpp b/src/Tables/Insertion.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Insertion.h b/src/Tables/Insertion.h
old mode 100755
new mode 100644
diff --git a/src/Tables/List.cpp b/src/Tables/List.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/List.h b/src/Tables/List.h
old mode 100755
new mode 100644
diff --git a/src/Tables/MatrixCmd.cpp b/src/Tables/MatrixCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/MatrixCmd.h b/src/Tables/MatrixCmd.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Micado.cpp b/src/Tables/Micado.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Micado.h b/src/Tables/Micado.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Period.cpp b/src/Tables/Period.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Period.h b/src/Tables/Period.h
old mode 100755
new mode 100644
diff --git a/src/Tables/RangeSelector.cpp b/src/Tables/RangeSelector.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/RangeSelector.h b/src/Tables/RangeSelector.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Selector.cpp b/src/Tables/Selector.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Selector.h b/src/Tables/Selector.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Survey.cpp b/src/Tables/Survey.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Survey.h b/src/Tables/Survey.h
old mode 100755
new mode 100644
diff --git a/src/Tables/TableTester.cpp b/src/Tables/TableTester.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/TableTester.h b/src/Tables/TableTester.h
old mode 100755
new mode 100644
diff --git a/src/Tables/ThreadAll.cpp b/src/Tables/ThreadAll.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/ThreadAll.h b/src/Tables/ThreadAll.h
old mode 100755
new mode 100644
diff --git a/src/Tables/ThreadBpm.cpp b/src/Tables/ThreadBpm.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/ThreadBpm.h b/src/Tables/ThreadBpm.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Twiss.cpp b/src/Tables/Twiss.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Twiss.h b/src/Tables/Twiss.h
old mode 100755
new mode 100644
diff --git a/src/Tables/Twiss3.cpp b/src/Tables/Twiss3.cpp
old mode 100755
new mode 100644
diff --git a/src/Tables/Twiss3.h b/src/Tables/Twiss3.h
old mode 100755
new mode 100644
diff --git a/src/Track/CMakeLists.txt b/src/Track/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Track/Track.cpp b/src/Track/Track.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/Track.h b/src/Track/Track.h
old mode 100755
new mode 100644
diff --git a/src/Track/TrackCmd.cpp b/src/Track/TrackCmd.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/TrackCmd.h b/src/Track/TrackCmd.h
old mode 100755
new mode 100644
diff --git a/src/Track/TrackEnd.cpp b/src/Track/TrackEnd.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/TrackEnd.h b/src/Track/TrackEnd.h
old mode 100755
new mode 100644
diff --git a/src/Track/TrackParser.cpp b/src/Track/TrackParser.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/TrackParser.h b/src/Track/TrackParser.h
old mode 100755
new mode 100644
diff --git a/src/Track/TrackRun.cpp b/src/Track/TrackRun.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/TrackRun.h b/src/Track/TrackRun.h
old mode 100755
new mode 100644
diff --git a/src/Track/TrackSave.cpp b/src/Track/TrackSave.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/TrackSave.h b/src/Track/TrackSave.h
old mode 100755
new mode 100644
diff --git a/src/Track/TrackStart.cpp b/src/Track/TrackStart.cpp
old mode 100755
new mode 100644
diff --git a/src/Track/TrackStart.h b/src/Track/TrackStart.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/CMakeLists.txt b/src/Utilities/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/Utilities/NumToStr.h b/src/Utilities/NumToStr.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/OpalException.cpp b/src/Utilities/OpalException.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/OpalException.h b/src/Utilities/OpalException.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/OpalFilter.cpp b/src/Utilities/OpalFilter.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/OpalFilter.h b/src/Utilities/OpalFilter.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/OpalSection.cpp b/src/Utilities/OpalSection.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/OpalSection.h b/src/Utilities/OpalSection.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/RegularExpression.cpp b/src/Utilities/RegularExpression.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/RegularExpression.h b/src/Utilities/RegularExpression.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/Round.cpp b/src/Utilities/Round.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/Round.h b/src/Utilities/Round.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/Timer.cpp b/src/Utilities/Timer.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/Timer.h b/src/Utilities/Timer.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/TpsWerrf.cpp b/src/Utilities/TpsWerrf.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/TpsWerrf.h b/src/Utilities/TpsWerrf.h
old mode 100755
new mode 100644
diff --git a/src/Utilities/Truncate.cpp b/src/Utilities/Truncate.cpp
old mode 100755
new mode 100644
diff --git a/src/Utilities/Truncate.h b/src/Utilities/Truncate.h
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/BoolConstant.cpp b/src/ValueDefinitions/BoolConstant.cpp
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/BoolConstant.h b/src/ValueDefinitions/BoolConstant.h
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/CMakeLists.txt b/src/ValueDefinitions/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/RealConstant.cpp b/src/ValueDefinitions/RealConstant.cpp
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/RealConstant.h b/src/ValueDefinitions/RealConstant.h
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/RealVariable.cpp b/src/ValueDefinitions/RealVariable.cpp
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/RealVariable.h b/src/ValueDefinitions/RealVariable.h
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/RealVector.cpp b/src/ValueDefinitions/RealVector.cpp
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/RealVector.h b/src/ValueDefinitions/RealVector.h
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/StringConstant.cpp b/src/ValueDefinitions/StringConstant.cpp
old mode 100755
new mode 100644
diff --git a/src/ValueDefinitions/StringConstant.h b/src/ValueDefinitions/StringConstant.h
old mode 100755
new mode 100644
diff --git a/src/addToDoxygenMainPage.h b/src/addToDoxygenMainPage.h
old mode 100755
new mode 100644
diff --git a/src/changes.cpp b/src/changes.cpp
old mode 100755
new mode 100644
diff --git a/src/changes.h b/src/changes.h
old mode 100755
new mode 100644
diff --git a/src/config.h.in b/src/config.h.in
old mode 100755
new mode 100644
diff --git a/src/opal.cpp b/src/opal.cpp
old mode 100755
new mode 100644
diff --git a/src/opal.h b/src/opal.h
old mode 100755
new mode 100644
diff --git a/src/revision.h.in b/src/revision.h.in
old mode 100755
new mode 100644
diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/Degrader-1-RT.o b/tests/Kollimator/Degrader/Degrader-1-RT.o
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/Degrader-1.in b/tests/Kollimator/Degrader/Degrader-1.in
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/Degrader-1.rt b/tests/Kollimator/Degrader/Degrader-1.rt
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/Degrader-1.sge b/tests/Kollimator/Degrader/Degrader-1.sge
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.lbal b/tests/Kollimator/Degrader/reference/Degrader-1.lbal
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.lbal.md5 b/tests/Kollimator/Degrader/reference/Degrader-1.lbal.md5
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.out b/tests/Kollimator/Degrader/reference/Degrader-1.out
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.out.md5 b/tests/Kollimator/Degrader/reference/Degrader-1.out.md5
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.stat b/tests/Kollimator/Degrader/reference/Degrader-1.stat
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.stat.md5 b/tests/Kollimator/Degrader/reference/Degrader-1.stat.md5
old mode 100755
new mode 100644
diff --git a/tests/Kollimator/collimator.in b/tests/Kollimator/collimator.in
old mode 100755
new mode 100644
diff --git a/tests/Main.cpp b/tests/Main.cpp
old mode 100755
new mode 100644
diff --git a/tests/PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in b/tests/PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/CMakeLists.txt b/tests/classic_src/AbsBeamline/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/DipoleFieldTest.cpp b/tests/classic_src/AbsBeamline/DipoleFieldTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/MultipoleTTest.cpp b/tests/classic_src/AbsBeamline/MultipoleTTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/OffsetTest.cpp b/tests/classic_src/AbsBeamline/OffsetTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/RingTest.cpp b/tests/classic_src/AbsBeamline/RingTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/SBend3DTest.cpp b/tests/classic_src/AbsBeamline/SBend3DTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/SBend3D_map.field b/tests/classic_src/AbsBeamline/SBend3D_map.field
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/ScalingFFAGMagnetTest.cpp b/tests/classic_src/AbsBeamline/ScalingFFAGMagnetTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/AbsBeamline/VariableRFCavityTest.cpp b/tests/classic_src/AbsBeamline/VariableRFCavityTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Algorithms/CMakeLists.txt b/tests/classic_src/Algorithms/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Algorithms/PolynomialTimeDependenceTest.cpp b/tests/classic_src/Algorithms/PolynomialTimeDependenceTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/CMakeLists.txt b/tests/classic_src/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/CMakeLists.txt b/tests/classic_src/Fields/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/CMakeLists.txt b/tests/classic_src/Fields/Interpolation/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/NDGridTest.cpp b/tests/classic_src/Fields/Interpolation/NDGridTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/PPSolveFactoryTest.cpp b/tests/classic_src/Fields/Interpolation/PPSolveFactoryTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/PolynomialPatchTest.cpp b/tests/classic_src/Fields/Interpolation/PolynomialPatchTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/SolveFactoryTest.cpp b/tests/classic_src/Fields/Interpolation/SolveFactoryTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/SquarePolynomialVectorTest.cpp b/tests/classic_src/Fields/Interpolation/SquarePolynomialVectorTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Fields/Interpolation/ThreeDGridTest.cpp b/tests/classic_src/Fields/Interpolation/ThreeDGridTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Utilities/CMakeLists.txt b/tests/classic_src/Utilities/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/classic_src/Utilities/RingSectionTest.cpp b/tests/classic_src/Utilities/RingSectionTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/ippl_src/CMakeLists.txt b/tests/ippl_src/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/ippl_src/Particle/CMakeLists.txt b/tests/ippl_src/Particle/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/ippl_src/Particle/EdgeCentering.cpp b/tests/ippl_src/Particle/EdgeCentering.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Algorithms/StatisticalErrors/CMakeLists.txt b/tests/opal_src/Algorithms/StatisticalErrors/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Algorithms/StatisticalErrors/Test1.cpp b/tests/opal_src/Algorithms/StatisticalErrors/Test1.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Algorithms/StatisticalErrors/Test1.h b/tests/opal_src/Algorithms/StatisticalErrors/Test1.h
old mode 100755
new mode 100644
diff --git a/tests/opal_src/BasicActions/CMakeLists.txt b/tests/opal_src/BasicActions/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_src/BasicActions/DumpEMFieldsTest.cpp b/tests/opal_src/BasicActions/DumpEMFieldsTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/BasicActions/DumpFieldsTest.cpp b/tests/opal_src/BasicActions/DumpFieldsTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/CMakeLists.txt b/tests/opal_src/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Distribution/BinomialTest.cpp b/tests/opal_src/Distribution/BinomialTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Distribution/CMakeLists.txt b/tests/opal_src/Distribution/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Distribution/GaussTest.cpp b/tests/opal_src/Distribution/GaussTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Elements/CMakeLists.txt b/tests/opal_src/Elements/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Elements/OpalOffsetTest.cpp b/tests/opal_src/Elements/OpalOffsetTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Elements/OpalPolynomialTimeDependenceTest.cpp b/tests/opal_src/Elements/OpalPolynomialTimeDependenceTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Elements/OpalVariableRFCavityTest.cpp b/tests/opal_src/Elements/OpalVariableRFCavityTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Utilities/CMakeLists.txt b/tests/opal_src/Utilities/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_src/Utilities/MockComponent.h b/tests/opal_src/Utilities/MockComponent.h
old mode 100755
new mode 100644
diff --git a/tests/opal_test_utilities/CMakeLists.txt b/tests/opal_test_utilities/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tests/opal_test_utilities/SilenceTest.cpp b/tests/opal_test_utilities/SilenceTest.cpp
old mode 100755
new mode 100644
diff --git a/tests/opal_test_utilities/SilenceTest.h b/tests/opal_test_utilities/SilenceTest.h
old mode 100755
new mode 100644
diff --git a/tests/sc/test-1.in b/tests/sc/test-1.in
old mode 100755
new mode 100644
diff --git a/tests/sc/test-2.in b/tests/sc/test-2.in
old mode 100755
new mode 100644
diff --git a/tests/sc/test-3.in b/tests/sc/test-3.in
old mode 100755
new mode 100644
diff --git a/tools/BandRF/Makefile.def b/tools/BandRF/Makefile.def
old mode 100755
new mode 100644
diff --git a/tools/BandRF/Readme b/tools/BandRF/Readme
old mode 100755
new mode 100644
diff --git a/tools/BandRF/ascii2h5block_asgic.cpp b/tools/BandRF/ascii2h5block_asgic.cpp
old mode 100755
new mode 100644
diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tools/README b/tools/README
old mode 100755
new mode 100644
diff --git a/tools/SDDS.patch b/tools/SDDS.patch
old mode 100755
new mode 100644
diff --git a/tools/SDDSCMakeLists.tar.gz b/tools/SDDSCMakeLists.tar.gz
old mode 100755
new mode 100644
diff --git a/tools/SDDSReader/CMakeLists.txt b/tools/SDDSReader/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tools/SDDSReader/config.h.in b/tools/SDDSReader/config.h.in
old mode 100755
new mode 100644
diff --git a/tools/SDDSReader/main.cpp b/tools/SDDSReader/main.cpp
old mode 100755
new mode 100644
diff --git a/tools/emacs/opal.el b/tools/emacs/opal.el
old mode 100755
new mode 100644
diff --git a/tools/opal2sdds/CMakeLists.txt b/tools/opal2sdds/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tools/opal2sdds/config.h.in b/tools/opal2sdds/config.h.in
old mode 100755
new mode 100644
diff --git a/tools/opal2sdds/main.cpp b/tools/opal2sdds/main.cpp
old mode 100755
new mode 100644
diff --git a/tools/sdds2opal/CMakeLists.txt b/tools/sdds2opal/CMakeLists.txt
old mode 100755
new mode 100644
diff --git a/tools/sdds2opal/config.h.in b/tools/sdds2opal/config.h.in
old mode 100755
new mode 100644
diff --git a/tools/sdds2opal/main.cpp b/tools/sdds2opal/main.cpp
old mode 100755
new mode 100644
-- 
GitLab