From c0fbe93bbe876ba2bdcaffa413bd61acd7998ae1 Mon Sep 17 00:00:00 2001 From: Jochem Snuverink <jochem.snuverink@psi.ch> Date: Fri, 9 Mar 2018 22:08:09 +0100 Subject: [PATCH] Revert "res. confl" This reverts commit 69985bb101a6a42f3b70045638ccbd1731a48de7. --- .gitattributes | 0 .gitignore | 0 CMakeLists.txt | 0 CMakeModules/FindGSL.cmake | 0 CMakeModules/FindGTest.cmake | 0 CMakeModules/FindH5Hut.cmake | 0 CMakeModules/FindHDF5.cmake | 0 CMakeModules/FindSDDS.cmake | 0 Doxyfile | 0 README.md | 0 cmake/OPALConfig.cmake.in | 0 doc/randomnotes.txt | 0 doc/refcard/opal-ref-card-bibliography.bib | 0 doc/refcard/opal-refcard.tex | 0 ippl/CMakeLists.txt | 0 ippl/Doxyfile | 0 ippl/INSTALL | 0 ippl/LICENSE | 0 ippl/README | 0 ippl/cmake/IPPLConfig.cmake.in | 0 ippl/doc/tex/dingbat.sty | 0 ippl/doc/tex/error_time.pdf | Bin ippl/doc/tex/figures/psi_logo_wide.eps | 0 ippl/doc/tex/figures/psi_logo_wide.pdf | Bin ippl/doc/tex/greens.pdf | Bin ippl/doc/tex/greens.ps | 0 ippl/doc/tex/html.sty | 0 ippl/doc/tex/introduction.tex | 0 ippl/doc/tex/ippl_centering_ref.tex | 0 ippl/doc/tex/ippl_fft.tex | 0 ippl/doc/tex/ippl_field_ref.tex | 0 ippl/doc/tex/ippl_fieldlayout_ref.tex | 0 ippl/doc/tex/ippl_fields.tex | 0 ippl/doc/tex/ippl_index_ref.tex | 0 ippl/doc/tex/ippl_mesh_ref.tex | 0 ippl/doc/tex/ippl_particles.tex | 0 ippl/doc/tex/ippl_setup.tex | 0 ippl/doc/tex/ippl_user_guide.tex | 0 ippl/doc/tex/pdfdraftcopy.sty | 0 ippl/src/.gitignore | 0 ippl/src/AmrParticle/AmrParticleBase.h | 0 ippl/src/AmrParticle/AmrParticleBase.hpp | 0 .../src/AmrParticle/AmrParticleLevelCounter.h | 0 ippl/src/AmrParticle/CMakeLists.txt | 0 ippl/src/AmrParticle/ParticleAmrLayout.h | 0 ippl/src/AppTypes/AntiSymTenzor.h | 0 ippl/src/AppTypes/AppTypeTraits.h | 0 ippl/src/AppTypes/CMakeLists.txt | 0 ippl/src/AppTypes/GenVektor.h | 0 ippl/src/AppTypes/SymTenzor.h | 0 ippl/src/AppTypes/TSVMeta.h | 0 ippl/src/AppTypes/TSVMetaAssign.h | 0 ippl/src/AppTypes/TSVMetaBinary.h | 0 ippl/src/AppTypes/TSVMetaCompare.h | 0 ippl/src/AppTypes/TSVMetaCross.h | 0 ippl/src/AppTypes/TSVMetaDot.h | 0 ippl/src/AppTypes/TSVMetaDotDot.h | 0 ippl/src/AppTypes/TSVMetaUnary.h | 0 ippl/src/AppTypes/Tenzor.h | 0 ippl/src/AppTypes/Vektor.h | 0 ippl/src/AppTypes/dcomplex.h | 0 ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp | 0 ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp | 0 ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp | 0 ippl/src/AppTypes/inst/SymTenzor_1D.cpp | 0 ippl/src/AppTypes/inst/SymTenzor_2D.cpp | 0 ippl/src/AppTypes/inst/SymTenzor_3D.cpp | 0 ippl/src/AppTypes/inst/Tenzor_1D.cpp | 0 ippl/src/AppTypes/inst/Tenzor_2D.cpp | 0 ippl/src/AppTypes/inst/Tenzor_3D.cpp | 0 ippl/src/AppTypes/inst/Vektor_1D.cpp | 0 ippl/src/AppTypes/inst/Vektor_2D.cpp | 0 ippl/src/AppTypes/inst/Vektor_3D.cpp | 0 ippl/src/CMakeLists.txt | 0 ippl/src/DataSource/CMakeLists.txt | 0 ippl/src/DataSource/DataConnect.cpp | 0 ippl/src/DataSource/DataConnect.h | 0 ippl/src/DataSource/DataConnectCreator.cpp | 0 ippl/src/DataSource/DataConnectCreator.h | 0 ippl/src/DataSource/DataSource.cpp | 0 ippl/src/DataSource/DataSource.h | 0 ippl/src/DataSource/DataSourceObject.h | 0 ippl/src/DataSource/FieldDataSource.h | 0 ippl/src/DataSource/FieldDataSource.hpp | 0 ippl/src/DataSource/FileDataConnect.h | 0 ippl/src/DataSource/FileFieldDataSource.h | 0 ippl/src/DataSource/FileFieldDataSource.hpp | 0 .../src/DataSource/FilePtclAttribDataSource.h | 0 .../DataSource/FilePtclAttribDataSource.hpp | 0 ippl/src/DataSource/FilePtclBaseDataSource.h | 0 .../src/DataSource/FilePtclBaseDataSource.hpp | 0 ippl/src/DataSource/MakeDataSource.h | 0 ippl/src/DataSource/MakeDataSource.hpp | 0 ippl/src/DataSource/PtclAttribDataSource.cpp | 0 ippl/src/DataSource/PtclAttribDataSource.h | 0 ippl/src/DataSource/PtclBaseDataSource.cpp | 0 ippl/src/DataSource/PtclBaseDataSource.h | 0 ippl/src/DataSource/ScalarDataSource.h | 0 ippl/src/DataSource/ScalarDataSource.hpp | 0 ippl/src/DataSource/StringDataSource.h | 0 ippl/src/DataSource/StringDataSource.hpp | 0 .../inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp | 0 .../inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp | 0 .../inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp | 0 .../inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp | 0 .../inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp | 0 .../inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp | 0 .../inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp | 0 .../inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp | 0 .../inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp | 0 .../inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp | 0 .../inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp | 0 .../inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp | 0 .../inst/FileFieldDS_Cart_Cell_1D.cpp | 0 .../inst/FileFieldDS_Cart_Cell_2D.cpp | 0 .../inst/FileFieldDS_Cart_Cell_3D.cpp | 0 .../inst/FileFieldDS_Cart_Vert_1D.cpp | 0 .../inst/FileFieldDS_Cart_Vert_2D.cpp | 0 .../inst/FileFieldDS_Cart_Vert_3D.cpp | 0 .../inst/FileFieldDS_Unif_Cell_1D.cpp | 0 .../inst/FileFieldDS_Unif_Cell_2D.cpp | 0 .../inst/FileFieldDS_Unif_Cell_3D.cpp | 0 .../inst/FileFieldDS_Unif_Vert_1D.cpp | 0 .../inst/FileFieldDS_Unif_Vert_2D.cpp | 0 .../inst/FileFieldDS_Unif_Vert_3D.cpp | 0 .../inst/FileParAttribAppTypesDS_1D.cpp | 0 .../inst/FileParAttribAppTypesDS_2D.cpp | 0 .../inst/FileParAttribAppTypesDS_3D.cpp | 0 .../DataSource/inst/FileParAttribDS_all.cpp | 0 .../inst/FileParBaseInteractDS_Cart_1D.cpp | 0 .../inst/FileParBaseInteractDS_Cart_2D.cpp | 0 .../inst/FileParBaseInteractDS_Cart_3D.cpp | 0 .../inst/FileParBaseInteractDS_Unif_1D.cpp | 0 .../inst/FileParBaseInteractDS_Unif_2D.cpp | 0 .../inst/FileParBaseInteractDS_Unif_3D.cpp | 0 .../inst/FileParBaseSpatialDS_Cart_1D.cpp | 0 .../inst/FileParBaseSpatialDS_Cart_2D.cpp | 0 .../inst/FileParBaseSpatialDS_Cart_3D.cpp | 0 .../inst/FileParBaseSpatialDS_Unif_1D.cpp | 0 .../inst/FileParBaseSpatialDS_Unif_2D.cpp | 0 .../inst/FileParBaseSpatialDS_Unif_3D.cpp | 0 .../inst/FileParBaseUniformDS_1D.cpp | 0 .../inst/FileParBaseUniformDS_2D.cpp | 0 .../inst/FileParBaseUniformDS_3D.cpp | 0 ippl/src/DomainMap/CMakeLists.txt | 0 ippl/src/DomainMap/DomainMap.h | 0 ippl/src/DomainMap/DomainMap.hpp | 0 ippl/src/FFT/CMakeLists.txt | 0 ippl/src/FFT/FFT.h | 0 ippl/src/FFT/FFT.hpp | 0 ippl/src/FFT/FFTBase.h | 0 ippl/src/FFT/FFTBase.hpp | 0 ippl/src/FFT/SCSL_FFT.F | 0 ippl/src/FFT/SCSL_FFT.h | 0 ippl/src/FFT/c_utils.c | 0 ippl/src/FFT/c_utils.h | 0 ippl/src/FFT/f2c.h | 0 ippl/src/FFT/fftpack.F | 0 ippl/src/FFT/fftpack.cpp | 0 ippl/src/FFT/fftpack.h | 0 ippl/src/FFT/fftpack_FFT.h | 0 ippl/src/FFT/fftpack_inc.c | 0 ippl/src/Field/Assign.h | 0 ippl/src/Field/Assign.hpp | 0 ippl/src/Field/AssignDefs.h | 0 ippl/src/Field/AssignGeneralBF.hpp | 0 ippl/src/Field/AssignGeneralIBF.hpp | 0 ippl/src/Field/AssignTags.h | 0 ippl/src/Field/BCond.h | 0 ippl/src/Field/BCond.hpp | 0 ippl/src/Field/BareField.h | 0 ippl/src/Field/BareField.hpp | 0 ippl/src/Field/BareFieldIterator.h | 0 ippl/src/Field/BrickExpression.h | 0 ippl/src/Field/BrickExpression.hpp | 0 ippl/src/Field/BrickIterator.h | 0 ippl/src/Field/BrickIterator.hpp | 0 ippl/src/Field/CMakeLists.txt | 0 ippl/src/Field/CompressedBrickIterator.h | 0 ippl/src/Field/CompressedBrickIterator.hpp | 0 ippl/src/Field/Field.h | 0 ippl/src/Field/Field.hpp | 0 ippl/src/Field/FieldLoc.h | 0 ippl/src/Field/FieldSpec.h | 0 ippl/src/Field/GuardCellSizes.h | 0 ippl/src/Field/GuardCellSizes.hpp | 0 ippl/src/Field/IndexedBareField.h | 0 ippl/src/Field/IndexedBareField.hpp | 0 ippl/src/Field/IndexedField.h | 0 ippl/src/Field/LField.h | 0 ippl/src/Field/LField.hpp | 0 ippl/src/Field/ReductionLoc.h | 0 ippl/src/Field/ReductionLoc.hpp | 0 .../Field/inst/BCondAppTypes_Cart_Cell_1D.cpp | 0 .../Field/inst/BCondAppTypes_Cart_Cell_2D.cpp | 0 .../Field/inst/BCondAppTypes_Cart_Cell_3D.cpp | 0 .../Field/inst/BCondAppTypes_Cart_Vert_1D.cpp | 0 .../Field/inst/BCondAppTypes_Cart_Vert_2D.cpp | 0 .../Field/inst/BCondAppTypes_Cart_Vert_3D.cpp | 0 .../Field/inst/BCondAppTypes_Unif_Cell_1D.cpp | 0 .../Field/inst/BCondAppTypes_Unif_Cell_2D.cpp | 0 .../Field/inst/BCondAppTypes_Unif_Cell_3D.cpp | 0 .../Field/inst/BCondAppTypes_Unif_Vert_1D.cpp | 0 .../Field/inst/BCondAppTypes_Unif_Vert_2D.cpp | 0 .../Field/inst/BCondAppTypes_Unif_Vert_3D.cpp | 0 ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp | 0 ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp | 0 ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp | 0 ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp | 0 ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp | 0 ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp | 0 ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp | 0 ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp | 0 ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp | 0 ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp | 0 ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp | 0 ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp | 0 ippl/src/Field/inst/BareFieldAppTypes_1D.cpp | 0 ippl/src/Field/inst/BareFieldAppTypes_2D.cpp | 0 ippl/src/Field/inst/BareFieldAppTypes_3D.cpp | 0 ippl/src/Field/inst/BareField_cmplx_1D.cpp | 0 ippl/src/Field/inst/BareField_cmplx_2D.cpp | 0 ippl/src/Field/inst/BareField_cmplx_3D.cpp | 0 ippl/src/Field/inst/BareField_fp_1D.cpp | 0 ippl/src/Field/inst/BareField_fp_2D.cpp | 0 ippl/src/Field/inst/BareField_fp_3D.cpp | 0 ippl/src/Field/inst/BareField_int_1D.cpp | 0 ippl/src/Field/inst/BareField_int_2D.cpp | 0 ippl/src/Field/inst/BareField_int_3D.cpp | 0 .../Field/inst/FieldAppTypes_Cart_Cell_1D.cpp | 0 .../Field/inst/FieldAppTypes_Cart_Cell_2D.cpp | 0 .../Field/inst/FieldAppTypes_Cart_Cell_3D.cpp | 0 .../Field/inst/FieldAppTypes_Cart_Vert_1D.cpp | 0 .../Field/inst/FieldAppTypes_Cart_Vert_2D.cpp | 0 .../Field/inst/FieldAppTypes_Cart_Vert_3D.cpp | 0 .../Field/inst/FieldAppTypes_Unif_Cell_1D.cpp | 0 .../Field/inst/FieldAppTypes_Unif_Cell_2D.cpp | 0 .../Field/inst/FieldAppTypes_Unif_Cell_3D.cpp | 0 .../Field/inst/FieldAppTypes_Unif_Vert_1D.cpp | 0 .../Field/inst/FieldAppTypes_Unif_Vert_2D.cpp | 0 .../Field/inst/FieldAppTypes_Unif_Vert_3D.cpp | 0 .../Field/inst/Field_cmplx_Cart_Cell_1D.cpp | 0 .../Field/inst/Field_cmplx_Cart_Cell_2D.cpp | 0 .../Field/inst/Field_cmplx_Cart_Cell_3D.cpp | 0 .../Field/inst/Field_cmplx_Cart_Vert_1D.cpp | 0 .../Field/inst/Field_cmplx_Cart_Vert_2D.cpp | 0 .../Field/inst/Field_cmplx_Cart_Vert_3D.cpp | 0 .../Field/inst/Field_cmplx_Unif_Cell_1D.cpp | 0 .../Field/inst/Field_cmplx_Unif_Cell_2D.cpp | 0 .../Field/inst/Field_cmplx_Unif_Cell_3D.cpp | 0 .../Field/inst/Field_cmplx_Unif_Vert_1D.cpp | 0 .../Field/inst/Field_cmplx_Unif_Vert_2D.cpp | 0 .../Field/inst/Field_cmplx_Unif_Vert_3D.cpp | 0 ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp | 0 ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp | 0 ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp | 0 ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp | 0 ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp | 0 ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp | 0 ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp | 0 ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp | 0 ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp | 0 ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp | 0 ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp | 0 ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp | 0 .../src/Field/inst/Field_int_Cart_Cell_1D.cpp | 0 .../src/Field/inst/Field_int_Cart_Cell_2D.cpp | 0 .../src/Field/inst/Field_int_Cart_Cell_3D.cpp | 0 .../src/Field/inst/Field_int_Cart_Vert_1D.cpp | 0 .../src/Field/inst/Field_int_Cart_Vert_2D.cpp | 0 .../src/Field/inst/Field_int_Cart_Vert_3D.cpp | 0 .../src/Field/inst/Field_int_Unif_Cell_1D.cpp | 0 .../src/Field/inst/Field_int_Unif_Cell_2D.cpp | 0 .../src/Field/inst/Field_int_Unif_Cell_3D.cpp | 0 .../src/Field/inst/Field_int_Unif_Vert_1D.cpp | 0 .../src/Field/inst/Field_int_Unif_Vert_2D.cpp | 0 .../src/Field/inst/Field_int_Unif_Vert_3D.cpp | 0 ippl/src/Field/inst/GuardCellSizes_1D.cpp | 0 ippl/src/Field/inst/GuardCellSizes_2D.cpp | 0 ippl/src/Field/inst/GuardCellSizes_3D.cpp | 0 ippl/src/Field/inst/LFieldAppTypes_1D.cpp | 0 ippl/src/Field/inst/LFieldAppTypes_2D.cpp | 0 ippl/src/Field/inst/LFieldAppTypes_3D.cpp | 0 ippl/src/Field/inst/LField_1D.cpp | 0 ippl/src/Field/inst/LField_2D.cpp | 0 ippl/src/Field/inst/LField_3D.cpp | 0 ippl/src/FieldLayout/BinaryBalancer.h | 0 ippl/src/FieldLayout/BinaryBalancer.hpp | 0 ippl/src/FieldLayout/CMakeLists.txt | 0 ippl/src/FieldLayout/CenteredFieldLayout.h | 0 ippl/src/FieldLayout/CenteredFieldLayout.hpp | 0 ippl/src/FieldLayout/ConejoBalancer.h | 0 ippl/src/FieldLayout/ConejoBalancer.hpp | 0 ippl/src/FieldLayout/ConejoBalancer_inst.cpp | 0 ippl/src/FieldLayout/FieldLayout.h | 0 ippl/src/FieldLayout/FieldLayout.hpp | 0 ippl/src/FieldLayout/FieldLayoutUser.cpp | 0 ippl/src/FieldLayout/FieldLayoutUser.h | 0 ippl/src/FieldLayout/MultiBalancer.cpp | 0 ippl/src/FieldLayout/MultiBalancer.h | 0 ippl/src/FieldLayout/MultiBalancer.t.cpp | 0 ippl/src/FieldLayout/VRB.cpp | 0 ippl/src/FieldLayout/VRB.h | 0 ippl/src/FieldLayout/Vnode.h | 0 ippl/src/FieldLayout/VnodeMultiBalancer.h | 0 ippl/src/FieldLayout/VnodeMultiBalancer.hpp | 0 .../inst/CenteredFieldLayout_Cart_Cell_1D.cpp | 0 .../inst/CenteredFieldLayout_Cart_Cell_2D.cpp | 0 .../inst/CenteredFieldLayout_Cart_Cell_3D.cpp | 0 .../inst/CenteredFieldLayout_Cart_Vert_1D.cpp | 0 .../inst/CenteredFieldLayout_Cart_Vert_2D.cpp | 0 .../inst/CenteredFieldLayout_Cart_Vert_3D.cpp | 0 .../inst/CenteredFieldLayout_Unif_Cell_1D.cpp | 0 .../inst/CenteredFieldLayout_Unif_Cell_2D.cpp | 0 .../inst/CenteredFieldLayout_Unif_Cell_3D.cpp | 0 .../inst/CenteredFieldLayout_Unif_Vert_1D.cpp | 0 .../inst/CenteredFieldLayout_Unif_Vert_2D.cpp | 0 .../inst/CenteredFieldLayout_Unif_Vert_3D.cpp | 0 ippl/src/FieldLayout/inst/FieldLayout_1D.cpp | 0 ippl/src/FieldLayout/inst/FieldLayout_2D.cpp | 0 ippl/src/FieldLayout/inst/FieldLayout_3D.cpp | 0 ippl/src/Index/CMakeLists.txt | 0 ippl/src/Index/Index.cpp | 0 ippl/src/Index/Index.h | 0 ippl/src/Index/IndexInlines.h | 0 ippl/src/Index/IndexedSIndex.h | 0 ippl/src/Index/LSIndex.h | 0 ippl/src/Index/NDIndex.h | 0 ippl/src/Index/NDIndexInlines.h | 0 ippl/src/Index/SIndex.h | 0 ippl/src/Index/SIndex.hpp | 0 ippl/src/Index/SIndexAssign.h | 0 ippl/src/Index/SIndexAssign.hpp | 0 ippl/src/Index/SOffset.h | 0 ippl/src/Index/inst/LSIndex_1D.cpp | 0 ippl/src/Index/inst/LSIndex_2D.cpp | 0 ippl/src/Index/inst/LSIndex_3D.cpp | 0 ippl/src/Index/inst/NDIndex_1D.cpp | 0 ippl/src/Index/inst/NDIndex_2D.cpp | 0 ippl/src/Index/inst/NDIndex_3D.cpp | 0 ippl/src/Index/inst/SIndex_1D.cpp | 0 ippl/src/Index/inst/SIndex_2D.cpp | 0 ippl/src/Index/inst/SIndex_3D.cpp | 0 ippl/src/Index/inst/SOffset_1D.cpp | 0 ippl/src/Index/inst/SOffset_2D.cpp | 0 ippl/src/Index/inst/SOffset_3D.cpp | 0 ippl/src/Ippl.h | 0 ippl/src/IpplVersions.h.in | 0 ippl/src/Meshes/CMakeLists.txt | 0 ippl/src/Meshes/Cartesian.h | 0 ippl/src/Meshes/Cartesian.hpp | 0 ippl/src/Meshes/CartesianCentering.h | 0 ippl/src/Meshes/CartesianCentering.hpp | 0 ippl/src/Meshes/CartesianCentering_inst.cpp | 0 ippl/src/Meshes/CartesianStencilSetup.h | 0 ippl/src/Meshes/Centering.cpp | 0 ippl/src/Meshes/Centering.h | 0 ippl/src/Meshes/Mesh.h | 0 ippl/src/Meshes/Mesh.hpp | 0 ippl/src/Meshes/UniformCartesian.h | 0 ippl/src/Meshes/UniformCartesian.hpp | 0 ippl/src/Meshes/inst/Cartesian_1D.cpp | 0 ippl/src/Meshes/inst/Cartesian_2D.cpp | 0 ippl/src/Meshes/inst/Cartesian_3D.cpp | 0 ippl/src/Meshes/inst/Mesh_1D.cpp | 0 ippl/src/Meshes/inst/Mesh_2D.cpp | 0 ippl/src/Meshes/inst/Mesh_3D.cpp | 0 ippl/src/Meshes/inst/UniformCartesian_1D.cpp | 0 ippl/src/Meshes/inst/UniformCartesian_2D.cpp | 0 ippl/src/Meshes/inst/UniformCartesian_3D.cpp | 0 ippl/src/Message/CMakeLists.txt | 0 ippl/src/Message/CRC.cpp | 0 ippl/src/Message/CRC.h | 0 ippl/src/Message/CommCreator.cpp | 0 ippl/src/Message/CommCreator.h | 0 ippl/src/Message/CommMPI.cpp | 0 ippl/src/Message/CommMPI.h | 0 ippl/src/Message/CommPM.cpp | 0 ippl/src/Message/CommPM.h | 0 ippl/src/Message/CommSHMEMPI.cpp | 0 ippl/src/Message/CommSHMEMPI.h | 0 ippl/src/Message/Communicate.cpp | 0 ippl/src/Message/Communicate.h | 0 ippl/src/Message/DataTypes.h | 0 ippl/src/Message/Formatter.cpp | 0 ippl/src/Message/Formatter.h | 0 ippl/src/Message/GlobalComm.h | 0 ippl/src/Message/GlobalComm.hpp | 0 ippl/src/Message/Message.h | 0 ippl/src/Message/Message.hpp | 0 ippl/src/Message/MessageFunctions.cpp | 0 ippl/src/Message/Operations.h | 0 ippl/src/Message/TagMaker.h | 0 ippl/src/Message/Tags.h | 0 ippl/src/PETE/CMakeLists.txt | 0 ippl/src/PETE/IpplExpressions.h | 0 ippl/src/PETE/IpplTypeComputations.h | 0 ippl/src/PETE/PETE.h | 0 ippl/src/PETE/TypeComputations.h | 0 ippl/src/Particle/AbstractParticle.h | 0 ippl/src/Particle/BoxParticleCachingPolicy.h | 0 ippl/src/Particle/CMakeLists.txt | 0 ippl/src/Particle/CellParticleCachingPolicy.h | 0 ippl/src/Particle/GenArrayParticle.h | 0 ippl/src/Particle/GenParticle.h | 0 ippl/src/Particle/IntCIC.h | 0 ippl/src/Particle/IntNGP.h | 0 ippl/src/Particle/IntSUDS.h | 0 ippl/src/Particle/IntTSC.h | 0 ippl/src/Particle/Interpolator.h | 0 ippl/src/Particle/IpplParticleBase.h | 0 ippl/src/Particle/IpplParticleBase.hpp | 0 ippl/src/Particle/NoParticleCachingPolicy.h | 0 ippl/src/Particle/PAssign.h | 0 ippl/src/Particle/PAssign.hpp | 0 ippl/src/Particle/PAssignDefs.h | 0 .../Particle/PairBuilder/BasicPairBuilder.h | 0 ippl/src/Particle/PairBuilder/CMakeLists.txt | 0 .../Particle/PairBuilder/HashPairBuilder.h | 0 .../PairBuilder/HashPairBuilderPeriodic.h | 0 .../HashPairBuilderPeriodicParallel.h | 0 ...PairBuilderPeriodicParallel_globCHaining.h | 0 .../src/Particle/PairBuilder/PairConditions.h | 0 .../Particle/PairBuilder/SortingPairBuilder.h | 0 ippl/src/Particle/ParticleAttrib.h | 0 ippl/src/Particle/ParticleAttrib.hpp | 0 ippl/src/Particle/ParticleAttribBase.h | 0 ippl/src/Particle/ParticleAttribElem.h | 0 ippl/src/Particle/ParticleBConds.h | 0 ippl/src/Particle/ParticleBalancer.h | 0 ippl/src/Particle/ParticleBalancer.hpp | 0 ippl/src/Particle/ParticleCashedLayout.h | 0 ippl/src/Particle/ParticleCashedLayout.hpp | 0 ippl/src/Particle/ParticleInteractAttrib.h | 0 ippl/src/Particle/ParticleInteractAttrib.hpp | 0 ippl/src/Particle/ParticleInteractLayout.h | 0 ippl/src/Particle/ParticleInteractLayout.hpp | 0 ippl/src/Particle/ParticleLayout.h | 0 ippl/src/Particle/ParticleLayout.hpp | 0 ippl/src/Particle/ParticleLayoutFromGrid.cpp | 0 ippl/src/Particle/ParticleLayoutFromGrid.h | 0 .../Particle/ParticleSpatialLayout.cppNudge | 0 ippl/src/Particle/ParticleSpatialLayout.h | 0 .../src/Particle/ParticleSpatialLayout.hNudge | 0 ippl/src/Particle/ParticleSpatialLayout.hpp | 0 ippl/src/Particle/ParticleUniformLayout.h | 0 ippl/src/Particle/ParticleUniformLayout.hpp | 0 .../inst/ParticleAttribAppTypes_1D.cpp | 0 .../inst/ParticleAttribAppTypes_2D.cpp | 0 .../inst/ParticleAttribAppTypes_3D.cpp | 0 ippl/src/Particle/inst/ParticleAttrib_all.cpp | 0 ippl/src/Particle/inst/ParticleBConds_1D.cpp | 0 ippl/src/Particle/inst/ParticleBConds_2D.cpp | 0 ippl/src/Particle/inst/ParticleBConds_3D.cpp | 0 .../inst/ParticleBaseInteract_Cart_1D.cpp | 0 .../inst/ParticleBaseInteract_Cart_2D.cpp | 0 .../inst/ParticleBaseInteract_Cart_3D.cpp | 0 .../inst/ParticleBaseInteract_Unif_1D.cpp | 0 .../inst/ParticleBaseInteract_Unif_2D.cpp | 0 .../inst/ParticleBaseInteract_Unif_3D.cpp | 0 .../inst/ParticleBaseSpatial_Cart_1D.cpp | 0 .../inst/ParticleBaseSpatial_Cart_2D.cpp | 0 .../inst/ParticleBaseSpatial_Cart_3D.cpp | 0 .../inst/ParticleBaseSpatial_Unif_1D.cpp | 0 .../inst/ParticleBaseSpatial_Unif_2D.cpp | 0 .../inst/ParticleBaseSpatial_Unif_3D.cpp | 0 .../Particle/inst/ParticleBaseUniform_1D.cpp | 0 .../Particle/inst/ParticleBaseUniform_2D.cpp | 0 .../Particle/inst/ParticleBaseUniform_3D.cpp | 0 .../inst/ParticleCashedLayout_Cart_1D.cpp | 0 .../inst/ParticleCashedLayout_Cart_2D.cpp | 0 .../inst/ParticleCashedLayout_Cart_3D.cpp | 0 .../inst/ParticleCashedLayout_Unif_1D.cpp | 0 .../inst/ParticleCashedLayout_Unif_2D.cpp | 0 .../inst/ParticleCashedLayout_Unif_3D.cpp | 0 .../ParticleInteractAttribAppTypes_1D.cpp | 0 .../ParticleInteractAttribAppTypes_2D.cpp | 0 .../ParticleInteractAttribAppTypes_3D.cpp | 0 .../inst/ParticleInteractAttrib_all.cpp | 0 .../inst/ParticleInteractLayout_Cart_1D.cpp | 0 .../inst/ParticleInteractLayout_Cart_2D.cpp | 0 .../inst/ParticleInteractLayout_Cart_3D.cpp | 0 .../inst/ParticleInteractLayout_Unif_1D.cpp | 0 .../inst/ParticleInteractLayout_Unif_2D.cpp | 0 .../inst/ParticleInteractLayout_Unif_3D.cpp | 0 ippl/src/Particle/inst/ParticleLayout_1D.cpp | 0 ippl/src/Particle/inst/ParticleLayout_2D.cpp | 0 ippl/src/Particle/inst/ParticleLayout_3D.cpp | 0 .../inst/ParticleSpatialLayout_Cart_1D.cpp | 0 .../inst/ParticleSpatialLayout_Cart_2D.cpp | 0 .../inst/ParticleSpatialLayout_Cart_3D.cpp | 0 .../inst/ParticleSpatialLayout_Unif_1D.cpp | 0 .../inst/ParticleSpatialLayout_Unif_2D.cpp | 0 .../inst/ParticleSpatialLayout_Unif_3D.cpp | 0 .../inst/ParticleUniformLayout_1D.cpp | 0 .../inst/ParticleUniformLayout_2D.cpp | 0 .../inst/ParticleUniformLayout_3D.cpp | 0 ippl/src/Profile/CMakeLists.txt | 0 ippl/src/Profile/Profiler.cpp | 0 ippl/src/Profile/Profiler.h | 0 ippl/src/ReadMeBuild | 0 ippl/src/Region/CMakeLists.txt | 0 ippl/src/Region/NDRegion.h | 0 ippl/src/Region/PRegion.h | 0 ippl/src/Region/RegionLayout.h | 0 ippl/src/Region/RegionLayout.hpp | 0 ippl/src/Region/Rnode.h | 0 ippl/src/Region/inst/NDRegion_1D.cpp | 0 ippl/src/Region/inst/NDRegion_2D.cpp | 0 ippl/src/Region/inst/NDRegion_3D.cpp | 0 ippl/src/Region/inst/PRegion_all.cpp | 0 ippl/src/Region/inst/RegionLayout_Cart_1D.cpp | 0 ippl/src/Region/inst/RegionLayout_Cart_2D.cpp | 0 ippl/src/Region/inst/RegionLayout_Cart_3D.cpp | 0 ippl/src/Region/inst/RegionLayout_Unif_1D.cpp | 0 ippl/src/Region/inst/RegionLayout_Unif_2D.cpp | 0 ippl/src/Region/inst/RegionLayout_Unif_3D.cpp | 0 ippl/src/SubField/CMakeLists.txt | 0 ippl/src/SubField/SubBareField.h | 0 ippl/src/SubField/SubBareField.hpp | 0 ippl/src/SubField/SubField.h | 0 ippl/src/SubField/SubField.hpp | 0 ippl/src/SubField/SubFieldAssign.h | 0 ippl/src/SubField/SubFieldAssign.hpp | 0 ippl/src/SubField/SubFieldAssignDefs.h | 0 ippl/src/SubField/SubFieldIter.h | 0 ippl/src/SubField/SubFieldTraits.h | 0 ippl/src/SubParticle/CMakeLists.txt | 0 ippl/src/SubParticle/SubParticleAssign.h | 0 ippl/src/SubParticle/SubParticleAssign.hpp | 0 ippl/src/SubParticle/SubParticleAssignDefs.h | 0 ippl/src/SubParticle/SubParticleAttrib.h | 0 ippl/src/SubParticle/SubParticleAttrib.hpp | 0 ippl/src/Utility/CMakeLists.txt | 0 ippl/src/Utility/DiscBuffer.cpp | 0 ippl/src/Utility/DiscBuffer.h | 0 ippl/src/Utility/DiscConfig.cpp | 0 ippl/src/Utility/DiscConfig.h | 0 ippl/src/Utility/DiscField.h | 0 ippl/src/Utility/DiscField.hpp | 0 ippl/src/Utility/DiscMeta.cpp | 0 ippl/src/Utility/DiscMeta.h | 0 ippl/src/Utility/DiscParticle.h | 0 ippl/src/Utility/DiscParticle.hpp | 0 ippl/src/Utility/DiscParticleFunctions.cpp | 0 ippl/src/Utility/DiscType.h | 0 ippl/src/Utility/FieldBlock.h | 0 ippl/src/Utility/FieldBlock.hpp | 0 ippl/src/Utility/FieldDebug.h | 0 ippl/src/Utility/FieldDebug.hpp | 0 ippl/src/Utility/FieldDebugFunctions.cpp | 0 ippl/src/Utility/FieldDebugFunctions.h | 0 ippl/src/Utility/FieldDebugPrint.h | 0 ippl/src/Utility/FieldDebugPrint.hpp | 0 ippl/src/Utility/FieldPrint.h | 0 ippl/src/Utility/FieldPrint.hpp | 0 ippl/src/Utility/FieldView.h | 0 ippl/src/Utility/FieldView.hpp | 0 ippl/src/Utility/Inform.cpp | 0 ippl/src/Utility/Inform.h | 0 ippl/src/Utility/IplCounter.h | 0 ippl/src/Utility/IpplCounter.cpp | 0 ippl/src/Utility/IpplCounter.h | 0 ippl/src/Utility/IpplException.h | 0 ippl/src/Utility/IpplInfo.cpp | 0 ippl/src/Utility/IpplInfo.h | 0 ippl/src/Utility/IpplMemoryUsage.cpp | 0 ippl/src/Utility/IpplMemoryUsage.h | 0 ippl/src/Utility/IpplMessageCounter.cpp | 0 ippl/src/Utility/IpplMessageCounter.h | 0 ippl/src/Utility/IpplStats.cpp | 0 ippl/src/Utility/IpplStats.h | 0 ippl/src/Utility/IpplTimings.cpp | 0 ippl/src/Utility/IpplTimings.h | 0 ippl/src/Utility/NamedObj.h | 0 ippl/src/Utility/PAssert.cpp | 0 ippl/src/Utility/PAssert.h | 0 ippl/src/Utility/ParticleDebug.h | 0 ippl/src/Utility/ParticleDebug.hpp | 0 ippl/src/Utility/ParticleDebugFunctions.cpp | 0 ippl/src/Utility/ParticleDebugFunctions.h | 0 ippl/src/Utility/Pool.cpp | 0 ippl/src/Utility/Pool.h | 0 ippl/src/Utility/Pooled.h | 0 ippl/src/Utility/Pooled.hpp | 0 ippl/src/Utility/RNGAssignDefs.h | 0 ippl/src/Utility/RNGBitReverse.h | 0 ippl/src/Utility/RNGLattice.h | 0 ippl/src/Utility/RNGRand.h | 0 ippl/src/Utility/RNGSimple.cpp | 0 ippl/src/Utility/RNGSimple.h | 0 ippl/src/Utility/RNGXCI.cpp | 0 ippl/src/Utility/RNGXCI.h | 0 ippl/src/Utility/RNGXDiv.cpp | 0 ippl/src/Utility/RNGXDiv.h | 0 ippl/src/Utility/RandomNumberGen.cpp | 0 ippl/src/Utility/RandomNumberGen.h | 0 ippl/src/Utility/RefBlock.h | 0 ippl/src/Utility/RefCounted.h | 0 ippl/src/Utility/SequenceGen.h | 0 ippl/src/Utility/StaticIpplInfo.cpp | 0 ippl/src/Utility/StaticIpplInfo.h | 0 ippl/src/Utility/Timer.cpp | 0 ippl/src/Utility/Timer.h | 0 ippl/src/Utility/Unique.cpp | 0 ippl/src/Utility/Unique.h | 0 ippl/src/Utility/User.cpp | 0 ippl/src/Utility/User.h | 0 ippl/src/Utility/UserList.cpp | 0 ippl/src/Utility/UserList.h | 0 ippl/src/Utility/Vec.h | 0 ippl/src/Utility/my_auto_ptr.h | 0 ippl/src/Utility/vmap.h | 0 ippl/src/Utility/vmap.hpp | 0 ippl/src/config.h.in | 0 ippl/test/6dtrack/.job | 0 ippl/test/6dtrack/CMakeLists.txt | 0 .../GTChargedParticles/GTChargedParticles.cpp | 0 .../GTChargedParticles/GTChargedParticles.hh | 0 ippl/test/6dtrack/GTConfigure/GTConfigure.hh | 0 .../6dtrack/GTDistribution/GTDistribution.cc | 0 .../6dtrack/GTDistribution/GTDistribution.hh | 0 .../6dtrack/GTDistribution/hammersley.cpp | 0 ippl/test/6dtrack/GTDistribution/hammersley.h | 0 ippl/test/6dtrack/GTDistribution/makeranlib | 0 ippl/test/6dtrack/GTDistribution/ranlib.cc | 0 ippl/test/6dtrack/GTDistribution/ranlib.h | 0 ippl/test/6dtrack/GTElements/ACG.cpp | 0 ippl/test/6dtrack/GTElements/ACG.h | 0 ippl/test/6dtrack/GTElements/Elements.hh | 0 ippl/test/6dtrack/GTElements/GTElemData.hh | 0 ippl/test/6dtrack/GTElements/GTGenElement.hh | 0 ippl/test/6dtrack/GTElements/GTIBS.hh | 0 .../test/6dtrack/GTElements/GTMultipoleMap.hh | 0 ippl/test/6dtrack/GTElements/GTRFCavityMap.hh | 0 ippl/test/6dtrack/GTElements/GTRadiation.hh | 0 ippl/test/6dtrack/GTElements/GTRecquadMap.hh | 0 ippl/test/6dtrack/GTElements/IBSProcess.cpp | 0 ippl/test/6dtrack/GTElements/IBSProcess.h | 0 .../GTElements/Merlin/PhotonSpectrumGen.cpp | 0 .../Merlin/SynchRadParticleProcess.cpp | 0 .../Merlin/SynchRadParticleProcess.h | 0 ippl/test/6dtrack/Makefile | 0 ippl/test/6dtrack/Makefile.def | 0 ippl/test/6dtrack/dsmc6d.cpp | 0 ippl/test/6dtrack/lat1.dat | 0 ippl/test/6dtrack/lat60.dat | 0 ippl/test/6dtrack/lat61.dat | 0 ippl/test/6dtrack/lat64.dat | 0 ippl/test/6dtrack/lat65.dat | 0 ippl/test/6dtrack/lat66.dat | 0 ippl/test/AMR/AmrDoxyfile | 0 ippl/test/AMR/AmrOpal.cpp | 0 ippl/test/AMR/AmrOpal.h | 0 ippl/test/AMR/AmrOpal_F.h | 0 ippl/test/AMR/CMakeLists.txt | 0 ippl/test/AMR/Distribution.cpp | 0 ippl/test/AMR/Distribution.h | 0 ippl/test/AMR/H5Reader.cpp | 0 ippl/test/AMR/H5Reader.h | 0 ippl/test/AMR/MGTSolver.cpp | 0 ippl/test/AMR/MGTSolver.h | 0 ippl/test/AMR/README | 0 ippl/test/AMR/Solver.cpp | 0 ippl/test/AMR/Solver.h | 0 ippl/test/AMR/Tagging_nd.f90 | 0 .../amrex-only/AssignMultiLevelDensity.cpp | 0 ippl/test/AMR/amrex-only/CMakeLists.txt | 0 ippl/test/AMR/amrex-only/Solver.cpp | 0 ippl/test/AMR/amrex-only/Solver.h | 0 ippl/test/AMR/amrex-only/inputs | 0 ippl/test/AMR/amrex-only/testDeposition.cpp | 0 .../AMR/amrex-only/testDepositionFail.cpp | 0 ippl/test/AMR/amrex-only/testGeometry.cpp | 0 ippl/test/AMR/amrex-only/testSolverFail.cpp | 0 ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp | 0 ippl/test/AMR/boxlib-amr/AmrPartBunch.h | 0 ippl/test/AMR/boxlib-amr/CMakeLists.txt | 0 ippl/test/AMR/boxlib-amr/PartBunch.h | 0 ippl/test/AMR/boxlib-amr/PartBunchBase.h | 0 ippl/test/AMR/boxlib-amr/PoissonProblems.cpp | 0 ippl/test/AMR/boxlib-amr/PoissonProblems.h | 0 ippl/test/AMR/boxlib-amr/error.cpp | 0 ippl/test/AMR/boxlib-amr/iterative.cpp | 0 ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp | 0 ippl/test/AMR/boxlib-amr/testGaussian.cpp | 0 ippl/test/AMR/boxlib-amr/testGridSolve.cpp | 0 ippl/test/AMR/boxlib-amr/testH5Read.cpp | 0 ippl/test/AMR/boxlib-amr/testHdf5.cpp | 0 ippl/test/AMR/boxlib-amr/testMultiBunch.cpp | 0 .../AMR/boxlib-amr/testOldPerformance.cpp | 0 ippl/test/AMR/boxlib-amr/testOldPlasma.cpp | 0 .../boxlib-amr/testPerfectLoadBalancing.cpp | 0 ippl/test/AMR/boxlib-amr/testReal.cpp | 0 ippl/test/AMR/boxlib-amr/testSolver.cpp | 0 ippl/test/AMR/boxlib-amr/testTracker.cpp | 0 ippl/test/AMR/boxlib-amr/testUnifSphere.cpp | 0 .../AMR/boxlib-amr/testUnifSphereGrid.cpp | 0 ippl/test/AMR/boxlib-amr/testUniform.cpp | 0 ippl/test/AMR/boxlib-amr/toFile.cpp | 0 ippl/test/AMR/helper_functions.h | 0 ippl/test/AMR/ippl-amr/AmrParticleBase.h | 0 ippl/test/AMR/ippl-amr/AmrParticleBase.hpp | 0 ippl/test/AMR/ippl-amr/CMakeLists.txt | 0 ippl/test/AMR/ippl-amr/LevelNumCounter.h | 0 ippl/test/AMR/ippl-amr/PartBunchAmr.h | 0 ippl/test/AMR/ippl-amr/ParticleAmrLayout.h | 0 ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp | 0 ippl/test/AMR/ippl-amr/inputs | 0 ippl/test/AMR/ippl-amr/testAmrPartBase.cpp | 0 ippl/test/AMR/ippl-amr/testCRTP.cpp | 0 .../AMR/ippl-amr/testDomainTransformSolve.cpp | 0 ippl/test/AMR/ippl-amr/testFromH5.cpp | 0 ippl/test/AMR/ippl-amr/testGaussian.cpp | 0 .../test/AMR/ippl-amr/testInitGuessSolver.cpp | 0 ippl/test/AMR/ippl-amr/testInitialBox.cpp | 0 ippl/test/AMR/ippl-amr/testLayout.cpp | 0 .../test/AMR/ippl-amr/testMultipleSources.cpp | 0 ippl/test/AMR/ippl-amr/testNewTracker.cpp | 0 ippl/test/AMR/ippl-amr/testPerformance.cpp | 0 ippl/test/AMR/ippl-amr/testPlasma.cpp | 0 ippl/test/AMR/ippl-amr/testScatterAMReX.cpp | 0 ippl/test/AMR/ippl-amr/testTagging.cpp | 0 ippl/test/AMR/ippl-amr/testUnifBox.cpp | 0 ippl/test/AMR/ippl-amr/testUnifSphere.cpp | 0 ippl/test/AMR/ippl-bunch/AmrPartBunch.h | 0 ippl/test/AMR/ippl-bunch/CMakeLists.txt | 0 ippl/test/AMR/ippl-bunch/PartBunch.h | 0 ippl/test/AMR/ippl-bunch/PartBunchBase.h | 0 .../AMR/ippl-bunch/testAdapterPattern.cpp | 0 ippl/test/AMR/ippl-bunch/testCRTP.cpp | 0 ippl/test/AMR/trilinos/Amesos2BottomSolver.h | 0 .../test/AMR/trilinos/Amesos2BottomSolver.hpp | 0 ippl/test/AMR/trilinos/AmrBoundary.h | 0 ippl/test/AMR/trilinos/AmrDirichletBoundary.h | 0 ippl/test/AMR/trilinos/AmrInterpolater.h | 0 .../AMR/trilinos/AmrLagrangeInterpolater.h | 0 .../AMR/trilinos/AmrLagrangeInterpolater.hpp | 0 ippl/test/AMR/trilinos/AmrMultiGrid.cpp | 0 ippl/test/AMR/trilinos/AmrMultiGrid.h | 0 ippl/test/AMR/trilinos/AmrMultiGridCore.h | 0 ippl/test/AMR/trilinos/AmrMultiGridDefs.h | 0 ippl/test/AMR/trilinos/AmrMultiGridLevel.h | 0 ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp | 0 ippl/test/AMR/trilinos/AmrOpenBoundary.h | 0 ippl/test/AMR/trilinos/AmrPCInterpolater.h | 0 ippl/test/AMR/trilinos/AmrPCInterpolater.hpp | 0 ippl/test/AMR/trilinos/AmrPeriodicBoundary.h | 0 ippl/test/AMR/trilinos/AmrPreconditioner.h | 0 ippl/test/AMR/trilinos/AmrRedistributor.cpp | 0 ippl/test/AMR/trilinos/AmrRedistributor.h | 0 ippl/test/AMR/trilinos/AmrSmoother.cpp | 0 ippl/test/AMR/trilinos/AmrSmoother.h | 0 .../AMR/trilinos/AmrTrilinearInterpolater.h | 0 .../AMR/trilinos/AmrTrilinearInterpolater.hpp | 0 ippl/test/AMR/trilinos/BelosBottomSolver.h | 0 ippl/test/AMR/trilinos/BelosBottomSolver.hpp | 0 ippl/test/AMR/trilinos/BottomSolver.h | 0 ippl/test/AMR/trilinos/CMakeLists.txt | 0 ippl/test/AMR/trilinos/FFTBottomSolver.cpp | 0 ippl/test/AMR/trilinos/FFTBottomSolver.h | 0 .../test/AMR/trilinos/Ifpack2Preconditioner.h | 0 .../AMR/trilinos/Ifpack2Preconditioner.hpp | 0 ippl/test/AMR/trilinos/MueLuBottomSolver.h | 0 ippl/test/AMR/trilinos/MueLuBottomSolver.hpp | 0 ippl/test/AMR/trilinos/MueLuPreconditioner.h | 0 .../test/AMR/trilinos/MueLuPreconditioner.hpp | 0 ippl/test/AMR/trilinos/build.h | 0 ippl/test/AMR/trilinos/testAmrMultigrid.cpp | 0 ippl/test/AMR/trilinos/testBitPattern.cpp | 0 ippl/test/AMR/trilinos/testBoundaryMatrix.cpp | 0 ippl/test/AMR/trilinos/testBoundaryVector.cpp | 0 ippl/test/AMR/trilinos/testCopy.cpp | 0 .../AMR/trilinos/testInterpolationMatrix.cpp | 0 ippl/test/AMR/trilinos/testLagrange.cpp | 0 ippl/test/AMR/trilinos/testNoFine.cpp | 0 ippl/test/AMR/trilinos/testPoissonMatrix.cpp | 0 .../AMR/trilinos/testRestrictionMatrix.cpp | 0 ippl/test/AMR/trilinos/testSmootherMatrix.cpp | 0 .../AMR/trilinos/testSolverComparison.cpp | 0 .../AMR/trilinos/testSpecialPoissonMatrix.cpp | 0 ippl/test/AMR/trilinos/testTrilinosSolver.cpp | 0 ippl/test/AMR/trilinos/testWithFine.cpp | 0 ippl/test/AMR/trilinos/tools.h | 0 ippl/test/AMR/trilinos/trilinos2ippl.cpp | 0 ippl/test/AMR/writePlotFile.H | 0 ippl/test/CMakeLists.txt | 0 ippl/test/Cartesian/CMakeLists.txt | 0 ippl/test/Cartesian/Makefile | 0 ippl/test/Cartesian/TestCartesian-1.cpp | 0 ippl/test/CavityTrack/CMakeLists.txt | 0 ippl/test/CavityTrack/CavitySolver.cpp | 0 ippl/test/CavityTrack/CavitySolver.h | 0 .../ChargedParticles/ChargedParticles.hh | 0 .../CavityTrack/Distribution/Distribution.cpp | 0 .../CavityTrack/Distribution/Distribution.hh | 0 ippl/test/CavityTrack/Distribution/makefile | 0 ippl/test/CavityTrack/Distribution/ranlib.cc | 0 ippl/test/CavityTrack/Makefile | 0 ippl/test/CavityTrack/TestRun/fort.22 | 0 .../CavityTrack/Validation/CavAccel-1.mws | 0 ippl/test/CavityTrack/Validation/ReadMe | 0 ippl/test/CavityTrack/Validation/makePlot.glp | 0 .../CavityTrack/Validation/swk/getPosVel.swk | 0 .../CavityTrack/Validation/swk/sk-Tint.swk | 0 .../CavityTrack/Validation/swk/sk-Tint2.swk | 0 ippl/test/CavityTrack/Validation/trial.mws | 0 ippl/test/CavityTrack/cavitytrack.cpp | 0 ippl/test/FFT/CMakeLists.txt | 0 ippl/test/FFT/Makefile | 0 .../FFT/SeaborgRes/SPP/TestA-DAccuracy.ps | 0 ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps | 0 .../test/FFT/SeaborgRes/SPP/data/TestA128.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestA256.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestB128.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestB256.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestC128.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestC256.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out | 0 ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestD128.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestD256.out | 0 .../test/FFT/SeaborgRes/SPP/data/TestD512.out | 0 ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl | 0 .../test/FFT/SeaborgRes/SSP/data/TestA128.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestA256.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestB128.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestB256.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestC128.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestC256.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out | 0 ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestD128.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestD256.out | 0 .../test/FFT/SeaborgRes/SSP/data/TestD512.out | 0 ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps | 0 ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps | 0 ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps | 0 ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp | 0 ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp | 0 ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp | 0 ippl/test/FFT/SeaborgRes/TestFFT.cpp | 0 ippl/test/FFT/SeaborgRes/TestRC.cpp | 0 ippl/test/FFT/SeaborgRes/data/TestA1024.out | 0 ippl/test/FFT/SeaborgRes/data/TestA128.out | 0 ippl/test/FFT/SeaborgRes/data/TestA16.out | 0 ippl/test/FFT/SeaborgRes/data/TestA256.out | 0 ippl/test/FFT/SeaborgRes/data/TestA32.out | 0 ippl/test/FFT/SeaborgRes/data/TestA512.out | 0 ippl/test/FFT/SeaborgRes/data/TestA64.out | 0 ippl/test/FFT/SeaborgRes/data/TestB1024.out | 0 ippl/test/FFT/SeaborgRes/data/TestB128.out | 0 ippl/test/FFT/SeaborgRes/data/TestB16.out | 0 ippl/test/FFT/SeaborgRes/data/TestB256.out | 0 ippl/test/FFT/SeaborgRes/data/TestB32.out | 0 ippl/test/FFT/SeaborgRes/data/TestB512.out | 0 ippl/test/FFT/SeaborgRes/data/TestB64.out | 0 ippl/test/FFT/SeaborgRes/data/TestC1024.out | 0 ippl/test/FFT/SeaborgRes/data/TestC128.out | 0 ippl/test/FFT/SeaborgRes/data/TestC16.out | 0 ippl/test/FFT/SeaborgRes/data/TestC256.out | 0 ippl/test/FFT/SeaborgRes/data/TestC32.out | 0 ippl/test/FFT/SeaborgRes/data/TestC512.out | 0 ippl/test/FFT/SeaborgRes/data/TestC64.out | 0 ippl/test/FFT/SeaborgRes/data/TestD256.out | 0 ippl/test/FFT/SeaborgRes/data/makePlot.gpl | 0 ippl/test/FFT/SeaborgRes/fftspeed.cpp | 0 ippl/test/FFT/SeaborgRes/makePlot.gpl | 0 ippl/test/FFT/TestFFT-1.cpp | 0 ippl/test/FFT/TestFFT-2.cpp | 0 ippl/test/FFT/TestFFT-XT3.cpp | 0 ippl/test/FFT/TestFFT.cpp.org | 0 ippl/test/FFT/TestFFTCos.cpp | 0 ippl/test/FFT/TestFFTSin.cpp | 0 ippl/test/FFT/TestRC.cpp | 65 +++++++++++++++--- ippl/test/FFT/TestRCMIC.cpp | 0 ippl/test/FFT/fftspeed.cpp | 0 ippl/test/FFT/nodefile | 0 ippl/test/FFT/run | 0 ippl/test/Hal/CMakeLists.txt | 0 ippl/test/Hal/Makefile | 0 ippl/test/Hal/yfld_q1.cpp | 0 ippl/test/Hal/yfld_q1_err.txt | 0 ippl/test/Hal/yfld_q2.cpp | 0 ippl/test/Makefile.def | 0 ippl/test/PwrSpec/CMakeLists.txt | 0 ippl/test/PwrSpec/Makefile | 0 ippl/test/PwrSpec/PwrSpec.cpp | 0 ippl/test/PwrSpec/PwrSpec.h | 0 ippl/test/PwrSpec/testPwrSpec.cpp | 0 ippl/test/adaTests/CMakeLists.txt | 0 ippl/test/adaTests/Makefile | 0 ippl/test/adaTests/TestDot1.cpp | 0 ippl/test/adaTests/TestDot2.cpp | 0 ippl/test/hdf5/.depend | 0 ippl/test/hdf5/CMakeLists.txt | 0 ippl/test/hdf5/Makefile | 0 ippl/test/hdf5/hdf5para-1.inp | 0 ippl/test/hdf5/hdf5para-2.inp | 0 ippl/test/hdf5/hdf5read-1.cpp | 0 ippl/test/hdf5/hdf5write-1.cpp | 0 ippl/test/hdf5/testHdf5-1.cpp | 0 ippl/test/nok/CMakeLists.txt | 0 ippl/test/nok/t3.cpp | 0 ippl/test/parallel/2ddens.cpp | 0 ippl/test/parallel/CMakeLists.txt | 0 ippl/test/parallel/Makefile | 0 ippl/test/parallel/dualmpi.cpp | 0 ippl/test/parallel/reduce-1.cpp | 0 ippl/test/parallel/reduce-2.cpp | 0 ippl/test/parallel/volley.cpp | 0 ippl/test/particle/1dperiodic.cpp | 0 ippl/test/particle/CMakeLists.txt | 0 ippl/test/particle/CacheTest.cpp | 0 ippl/test/particle/ChargedParticleFactory.hpp | 0 ippl/test/particle/DiscParticle.cpp | 0 ippl/test/particle/FFTFieldSolver.cpp | 0 ippl/test/particle/FieldCompare.cpp | 0 ippl/test/particle/Makefile | 0 ippl/test/particle/PIC2d.cpp | 0 ippl/test/particle/PIC3d.cpp | 0 ippl/test/particle/PIC3dBCo-p.cpp | 0 ippl/test/particle/PIC3dBCo-p.cpp.nok | 0 ippl/test/particle/PairTest.cpp | 0 ippl/test/particle/VTKFieldWriterParallel.hpp | 0 ippl/test/particle/chsr-1.cpp | 0 ippl/test/particle/chsr-2.cpp | 0 ippl/test/particle/cref.cpp | 0 ippl/test/particle/interpolate.cpp | 0 ippl/test/particle/loadbalance.cpp | 0 ippl/test/particle/neighNodeTest1.cpp | 0 ippl/test/particle/nodefile | 0 ippl/test/particle/p3m3d.cpp | 0 ippl/test/particle/p3m3dHeating.cpp | 0 ippl/test/particle/p3m3dMicrobunching.cpp | 0 ippl/test/particle/p3m3dRegressionTests.cpp | 0 ippl/test/particle/p3m3dTwoStream.cpp | 0 ippl/test/particle/p3m3dTwoStreamParallel.cpp | 0 ippl/test/particle/p3m3dplot.p | 0 ippl/test/particle/p3m3dreadme.txt | 0 ippl/test/particle/parexp.cpp | 0 ippl/test/particle/pbconds.cpp | 0 ippl/test/particle/pbconds3D.cpp | 0 ippl/test/particle/pbconds_vis.cpp | 0 ippl/test/particle/pdbtest.cpp | 0 ippl/test/particle/run | 0 ippl/test/particle/salman-1.cpp | 0 ippl/test/particle/spatial.cpp | 0 ippl/test/particle/spatial.cpp.org | 0 ippl/test/particle/test-scatter-1.cpp | 0 ippl/test/particle/test-update-1.cpp | 0 ippl/test/particle/test-update-1.sge | 0 ippl/test/particle/typtest.cpp | 0 ippl/test/particle/uniform.cpp | 0 ippl/test/particle/vlasovBB1D.cpp | 0 ippl/test/poissonsolvers/CMakeLists.txt | 0 ippl/test/poissonsolvers/Makefile | 0 ippl/test/poissonsolvers/ReadMe | 0 ippl/test/poissonsolvers/data1.dat | 0 ippl/test/poissonsolvers/femmgTest.cpp | 0 ippl/test/simple-new/.depend | 0 ippl/test/simple-new/CMakeLists.txt | 0 ippl/test/simple-new/Makefile | 0 ippl/test/simple-new/id-test1.cpp | 0 ippl/test/simple-new/memcheck-1.cpp | 0 ippl/test/simple-new/t1.cpp | 0 ippl/test/simple-new/t2.cpp | 0 ippl/test/simple-new/t3.cpp | 0 ippl/test/simple-new/t4.cpp | 0 ippl/test/simple-new/t5.cpp | 0 ippl/test/simple-new/t6.cpp | 0 ippl/test/simple-new/t7.cpp | 0 ippl/test/simple-new/t8.cpp | 0 ippl/test/simple/.depend | 0 ippl/test/simple/2ddiffusion-1.cpp | 0 ippl/test/simple/CMakeLists.txt | 0 ippl/test/simple/Clock.h | 0 ippl/test/simple/FVecOps.cpp | 0 ippl/test/simple/Makefile | 0 ippl/test/simple/ScalarAdvection.cpp | 0 ippl/test/simple/Slice.cpp | 0 ippl/test/simple/TestAverageVC_CV.cpp | 0 ippl/test/simple/TestBC.cpp | 0 ippl/test/simple/TestCartesianCentering.cpp | 0 ippl/test/simple/TestEureka.cpp | 0 ippl/test/simple/TestFieldDebug.cpp | 0 ippl/test/simple/TestFieldDebug2.cpp | 0 ippl/test/simple/TestParticleDebug.cpp | 0 .../test/simple/TestParticleDebugParallel.cpp | 0 ippl/test/simple/TestPeriodicBC.cpp | 0 ippl/test/simple/TestPeriodicBC.txt | 0 ippl/test/simple/TestPeriodicBCGuardCell1.txt | 0 ippl/test/simple/TestPeriodicBCGuardCell2.txt | 0 ippl/test/simple/TestScalarIndexing.cpp | 0 ippl/test/simple/TestTensorUnaryOps.cpp | 0 ippl/test/simple/balance.cpp | 0 ippl/test/simple/bc.cpp | 0 ippl/test/simple/bc2.cpp | 0 ippl/test/simple/bc3.cpp | 0 ippl/test/simple/bc_convert.cpp | 0 ippl/test/simple/bool.cpp | 0 ippl/test/simple/component.cpp | 0 ippl/test/simple/compressed.cpp | 0 ippl/test/simple/conejo_balance.cpp | 0 ippl/test/simple/ctoc.cpp | 0 ippl/test/simple/cv.cpp | 0 ippl/test/simple/doof2d_a.cpp | 0 ippl/test/simple/doof2d_complex.cpp | 0 ippl/test/simple/doof2d_file.cpp | 0 ippl/test/simple/doof2d_simple.cpp | 0 ippl/test/simple/doof2d_vis.cpp | 0 ippl/test/simple/doof3d_file.cpp | 0 ippl/test/simple/doof3d_vis.cpp | 0 ippl/test/simple/fermi-dirac-field.cpp | 0 ippl/test/simple/fivefields.cpp | 0 ippl/test/simple/float.cpp | 0 ippl/test/simple/flyercode.cpp | 0 ippl/test/simple/funcface.cpp | 0 ippl/test/simple/gcprint.cpp | 0 ippl/test/simple/itercompress.cpp | 0 ippl/test/simple/left.cpp | 0 ippl/test/simple/minmax.cpp | 0 ippl/test/simple/patches.cpp | 0 ippl/test/simple/reduce.cpp | 0 ippl/test/simple/reduceloc.cpp | 0 ippl/test/simple/repartition.cpp | 0 ippl/test/simple/repartition.cpp.org | 0 ippl/test/simple/send | 0 ippl/test/simple/single.cpp | 0 ippl/test/simple/slices.cpp | 0 ippl/test/simple/soffset.cpp | 0 ippl/test/simple/subdivide.cpp | 0 ippl/test/simple/subreadtest.cpp | 0 ippl/test/simple/t.cpp | 0 ippl/test/simple/t1.cpp | 0 ippl/test/simple/t2.cpp | 0 ippl/test/simple/t3.cpp | 0 ippl/test/simple/t4.cpp | 0 ippl/test/simple/t5.cpp | 0 ippl/test/simple/t6.cpp | 0 ippl/test/simple/t7.cpp | 0 ippl/test/simple/t8.cpp | 0 ippl/test/simple/transpose.cpp | 0 ippl/test/simple/tv.cpp | 0 ippl/test/simple/tz.cpp | 0 ippl/test/simple/vc.cpp | 0 ippl/test/sindex/CMakeLists.txt | 0 ippl/test/sindex/Makefile | 0 ippl/test/sindex/TestSIndex.cpp | 0 ippl/test/sindex/compsindex.cpp | 0 ippl/test/sindex/sindex.cpp | 0 ippl/test/sindex/subfield.cpp | 0 ippl/test/sindex/vertcell.cpp | 0 ippl/test/speed/CMakeLists.txt | 0 ippl/test/speed/Makefile | 0 ippl/test/speed/diskfield.cpp | 0 ippl/test/speed/gcspeed.cpp | 0 ippl/test/speed/make.out | 0 ippl/test/speed/particle_simple.cpp | 0 ippl/test/speed/reducespeed.cpp | 0 ippl/test/speed/speed1.cpp | 0 ippl/test/speed/stencil1.cpp | 0 ippl/test/speed/stencil_c.c | 0 ippl/test/toyfdtf/CMakeLists.txt | 0 ippl/test/toyfdtf/Makefile | 0 .../toyfdtf/ToyFDTD-DataSink/DataSink.cpp | 0 ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h | 0 .../toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp | 0 ippl/test/toyfdtf/ipplToyFDTD2.cpp | 0 ippl/test/ttrack/CMakeLists.txt | 0 ippl/test/ttrack/Doxyfile | 0 .../GTChargedParticles/GTChargedParticles.cpp | 0 .../GTChargedParticles/GTChargedParticles.hh | 0 ippl/test/ttrack/GTConfigure/GTConfigure.hh | 0 .../ttrack/GTDistribution/GTDistribution.cc | 0 .../ttrack/GTDistribution/GTDistribution.hh | 0 .../test/ttrack/GTDistribution/hammersley.cpp | 0 ippl/test/ttrack/GTDistribution/hammersley.h | 0 ippl/test/ttrack/GTDistribution/ranlib.cc | 0 ippl/test/ttrack/GTDistribution/ranlib.h | 0 ippl/test/ttrack/GTElements/ACG.cpp | 0 ippl/test/ttrack/GTElements/ACG.h | 0 ippl/test/ttrack/GTElements/Elements.hh | 0 ippl/test/ttrack/GTElements/GTElemData.hh | 0 ippl/test/ttrack/GTElements/GTGenElement.hh | 0 ippl/test/ttrack/GTElements/GTIBS.hh | 0 ippl/test/ttrack/GTElements/GTMultipoleMap.hh | 0 ippl/test/ttrack/GTElements/GTRFCavityMap.hh | 0 ippl/test/ttrack/GTElements/GTRadiation.hh | 0 ippl/test/ttrack/GTElements/GTRecquadMap.hh | 0 ippl/test/ttrack/GTElements/IBSProcess.cpp | 0 ippl/test/ttrack/GTElements/IBSProcess.h | 0 .../GTElements/Merlin/PhotonSpectrumGen.cpp | 0 .../Merlin/SynchRadParticleProcess.cpp | 0 .../Merlin/SynchRadParticleProcess.h | 0 ippl/test/ttrack/GTUtilities/GTConst.hh | 0 ippl/test/ttrack/GTUtilities/GTPhysics.cc | 0 ippl/test/ttrack/GTUtilities/GTPhysics.h | 0 ippl/test/ttrack/Makefile | 0 ippl/test/ttrack/Makefile.def | 0 ippl/test/ttrack/README | 0 ippl/test/ttrack/aur-1.dat | 0 ippl/test/ttrack/dsmc.cpp | 0 ippl/test/ttrack/report/direct.tex | 0 ippl/test/ttrack/report/divrad.png | Bin ippl/test/ttrack/report/feynman.png | Bin ippl/test/ttrack/report/future.tex | 0 ippl/test/ttrack/report/implementation.tex | 0 ippl/test/ttrack/report/introduction.tex | 0 ippl/test/ttrack/report/literature.tex | 0 ippl/test/ttrack/report/longtermbehavior.png | Bin .../ttrack/report/presentation/aurlong.pdf | Bin .../test/ttrack/report/presentation/inter.pdf | Bin .../ttrack/report/presentation/lowemi.dat | 0 .../report/presentation/presentation.tex | 0 .../ttrack/report/presentation/scaling.dat | 0 .../presentation/sls-acceptancevslifetime.dat | 0 .../report/presentation/sls-longterm.pdf | Bin ippl/test/ttrack/report/radius.png | Bin ippl/test/ttrack/report/radius2.png | Bin ippl/test/ttrack/report/report.tex | 0 ippl/test/ttrack/report/results.tex | 0 ippl/test/ttrack/report/simulation.tex | 0 ippl/test/ttrack/report/theory.tex | 0 ippl/test/ttrack/sls-1.dat | 0 ippl/test/ttrack/touscheklifetime.nb | 0 ippl/test/twostream-1/.depend | 0 ippl/test/twostream-1/CMakeLists.txt | 0 ippl/test/twostream-1/Makefile | 0 .../Utility/Algorithms/AbstractMapper.cpp | 0 .../Utility/Algorithms/AbstractMapper.h | 0 .../Utility/Algorithms/AbstractTracker.cpp | 0 .../Utility/Algorithms/AbstractTracker.h | 0 .../Utility/Algorithms/DefaultVisitor.cpp | 0 .../Utility/Algorithms/DefaultVisitor.h | 0 .../Utility/Algorithms/Flagger.cpp | 0 .../twostream-1/Utility/Algorithms/Flagger.h | 0 .../Utility/Algorithms/IdealMapper.cpp | 0 .../Utility/Algorithms/IdealMapper.h | 0 .../Utility/Algorithms/LinearMapper.cpp | 0 .../Utility/Algorithms/LinearMapper.h | 0 .../Utility/Algorithms/MapIntegrator.cpp | 0 .../Utility/Algorithms/MapIntegrator.h | 0 .../twostream-1/Utility/Algorithms/Mapper.cpp | 0 .../twostream-1/Utility/Algorithms/Mapper.h | 0 .../Utility/Algorithms/OrbitTracker.cpp | 0 .../Utility/Algorithms/OrbitTracker.h | 0 .../Utility/Algorithms/PartBunch.cpp | 0 .../Utility/Algorithms/PartBunch.h | 0 .../Utility/Algorithms/PartData.cpp | 0 .../twostream-1/Utility/Algorithms/PartData.h | 0 .../Utility/Algorithms/Particle.cpp | 0 .../twostream-1/Utility/Algorithms/Particle.h | 0 .../Utility/Algorithms/Surveyor.cpp | 0 .../twostream-1/Utility/Algorithms/Surveyor.h | 0 .../Utility/Algorithms/ThinMapper.cpp | 0 .../Utility/Algorithms/ThinMapper.h | 0 .../Utility/Algorithms/ThinTracker.cpp | 0 .../Utility/Algorithms/ThinTracker.h | 0 .../Utility/Algorithms/TrackIntegrator.cpp | 0 .../Utility/Algorithms/TrackIntegrator.h | 0 .../Utility/Algorithms/Tracker.cpp | 0 .../twostream-1/Utility/Algorithms/Tracker.h | 0 .../twostream-1/Utility/Algorithms/rbendmap.h | 0 .../Utility/MemoryManagement/OwnPtr.h | 0 .../Utility/MemoryManagement/Pointer.h | 0 .../Utility/MemoryManagement/RCObject.h | 0 .../Utility/Parser/AbsFileStream.cpp | 0 .../Utility/Parser/AbsFileStream.h | 0 .../Utility/Parser/ClassicParser.cpp | 0 .../Utility/Parser/ClassicParser.h | 0 .../twostream-1/Utility/Parser/FileStream.cpp | 0 .../twostream-1/Utility/Parser/FileStream.h | 0 .../twostream-1/Utility/Parser/Parser.cpp | 0 ippl/test/twostream-1/Utility/Parser/Parser.h | 0 .../Utility/Parser/SimpleStatement.cpp | 0 .../Utility/Parser/SimpleStatement.h | 0 .../twostream-1/Utility/Parser/Statement.cpp | 0 .../twostream-1/Utility/Parser/Statement.h | 0 .../Utility/Parser/StringStream.cpp | 0 .../twostream-1/Utility/Parser/StringStream.h | 0 .../Utility/Parser/TerminalStream.cpp | 0 .../Utility/Parser/TerminalStream.h | 0 .../test/twostream-1/Utility/Parser/Token.cpp | 0 ippl/test/twostream-1/Utility/Parser/Token.h | 0 .../Utility/Parser/TokenStream.cpp | 0 .../twostream-1/Utility/Parser/TokenStream.h | 0 .../twostream-1/Utility/Physics/Physics.cpp | 0 .../twostream-1/Utility/Physics/Physics.h | 0 .../Utility/Utilities/ArithmeticError.cpp | 0 .../Utility/Utilities/ArithmeticError.h | 0 .../Utility/Utilities/AttributeError.cpp | 0 .../Utility/Utilities/AttributeError.h | 0 .../Utility/Utilities/ClassicException.cpp | 0 .../Utility/Utilities/ClassicException.h | 0 .../Utility/Utilities/ComplexErrorFun.cpp | 0 .../Utility/Utilities/ComplexErrorFun.h | 0 .../Utility/Utilities/ConvergenceError.cpp | 0 .../Utility/Utilities/ConvergenceError.h | 0 .../Utility/Utilities/DivideError.cpp | 0 .../Utility/Utilities/DivideError.h | 0 .../Utility/Utilities/DomainError.cpp | 0 .../Utility/Utilities/DomainError.h | 0 .../Utility/Utilities/EigenvalueError.cpp | 0 .../Utility/Utilities/EigenvalueError.h | 0 .../Utility/Utilities/FormatError.cpp | 0 .../Utility/Utilities/FormatError.h | 0 .../twostream-1/Utility/Utilities/Gauss.cpp | 0 .../twostream-1/Utility/Utilities/Gauss.h | 0 .../Utility/Utilities/InverseGauss.cpp | 0 .../Utility/Utilities/InverseGauss.h | 0 .../Utility/Utilities/LogicalError.cpp | 0 .../Utility/Utilities/LogicalError.h | 0 .../Utility/Utilities/NormalFormError.cpp | 0 .../Utility/Utilities/NormalFormError.h | 0 .../Utility/Utilities/OverflowError.cpp | 0 .../Utility/Utilities/OverflowError.h | 0 .../Utility/Utilities/ParseError.cpp | 0 .../Utility/Utilities/ParseError.h | 0 .../twostream-1/Utility/Utilities/Random.cpp | 0 .../twostream-1/Utility/Utilities/Random.h | 0 .../Utility/Utilities/RangeError.cpp | 0 .../Utility/Utilities/RangeError.h | 0 .../Utility/Utilities/SingularMatrixError.cpp | 0 .../Utility/Utilities/SingularMatrixError.h | 0 .../Utility/Utilities/SizeError.cpp | 0 .../twostream-1/Utility/Utilities/SizeError.h | 0 .../twostream-1/Utility/Utilities/User0.cpp | 0 .../twostream-1/Utility/Utilities/User1.cpp | 0 .../twostream-1/Utility/Utilities/User2.cpp | 0 ippl/test/twostream-1/anal.gpl | 0 ippl/test/twostream-1/anal.kumac | 0 ippl/test/twostream-1/analtest.gpl | 0 ippl/test/twostream-1/constfoc-1.inp | 0 ippl/test/twostream-1/data1.dat | 0 ippl/test/twostream-1/data2.dat | 0 ippl/test/twostream-1/driftsc-1.inp | 0 ippl/test/twostream-1/driftsc-2.inp | 0 ippl/test/twostream-1/test-1.inp | 0 ippl/test/twostream-1/test-2.inp | 0 ippl/test/twostream-1/twostream-2.cpp | 0 opt-pilot/.gitignore | 0 opt-pilot/CMakeLists.txt | 0 opt-pilot/Comm/CommSplitter.h | 0 opt-pilot/Comm/MasterGraph/NDimMesh.h | 0 opt-pilot/Comm/MasterGraph/NoMasterGraph.h | 0 .../Comm/MasterGraph/SocialNetworkGraph.h | 0 opt-pilot/Comm/MasterNode.h | 0 opt-pilot/Comm/Splitter/GeometricStrategy.h | 0 opt-pilot/Comm/Splitter/ManyMasterSplit.h | 0 opt-pilot/Comm/Splitter/RandomStrategy.h | 0 opt-pilot/Comm/Splitter/ReadSplitFromFile.h | 0 opt-pilot/Comm/Splitter/SplitStrategy.h | 0 opt-pilot/Comm/Topology/CommTopology.h | 0 opt-pilot/Comm/Topology/NoCommTopology.h | 0 opt-pilot/Comm/types.h | 0 opt-pilot/Doxyfile | 0 opt-pilot/Drivers/CMakeLists.txt | 0 opt-pilot/Drivers/pisa-opal/CMakeLists.txt | 0 opt-pilot/Drivers/pisa-opal/pisa-opal.cpp | 0 .../Drivers/pisa-standalone/CMakeLists.txt | 0 .../pisa-standalone/pisa-standalone.cpp | 0 opt-pilot/Expression/CMakeLists.txt | 0 opt-pilot/Expression/Expression.h | 0 opt-pilot/Expression/FromFile.cpp | 0 opt-pilot/Expression/FromFile.h | 0 opt-pilot/Expression/GlobalFunctions.h | 0 opt-pilot/Expression/Parser/annotation.hpp | 0 opt-pilot/Expression/Parser/ast.hpp | 0 opt-pilot/Expression/Parser/error_handler.hpp | 0 opt-pilot/Expression/Parser/evaluator.cpp | 0 opt-pilot/Expression/Parser/evaluator.hpp | 0 opt-pilot/Expression/Parser/expression.cpp | 0 opt-pilot/Expression/Parser/expression.hpp | 0 .../Expression/Parser/expression_def.hpp | 0 opt-pilot/Expression/Parser/function.hpp | 0 opt-pilot/Expression/Parser/requirements.hpp | 0 opt-pilot/Expression/Parser/skipper.hpp | 0 opt-pilot/Expression/ProbeVariable.h | 0 opt-pilot/Expression/PythonExpr.h | 0 opt-pilot/Expression/RadialPeak.cpp | 0 opt-pilot/Expression/RadialPeak.h | 0 opt-pilot/Expression/SDDSVariable.h | 0 opt-pilot/Expression/SumErrSq.cpp | 0 opt-pilot/Expression/SumErrSq.h | 0 opt-pilot/Expression/SumErrSqRadialPeak.cpp | 0 opt-pilot/Expression/SumErrSqRadialPeak.h | 0 opt-pilot/Optimizer/EA/BlendCrossover.h | 0 opt-pilot/Optimizer/EA/FixedPisaNsga2.h | 0 opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc | 0 .../Optimizer/EA/IndependentBitMutation.h | 0 opt-pilot/Optimizer/EA/Individual.h | 0 .../Optimizer/EA/NaiveOnePointCrossover.h | 0 .../Optimizer/EA/NaiveUniformCrossover.h | 0 opt-pilot/Optimizer/EA/OneBitMutation.h | 0 opt-pilot/Optimizer/EA/Population.h | 0 .../Optimizer/EA/SimulatedBinaryCrossover.h | 0 opt-pilot/Optimizer/EA/Variator.h | 0 opt-pilot/Optimizer/Optimizer.h | 0 opt-pilot/Pilot/Pilot.h | 0 opt-pilot/Pilot/Poller.h | 0 opt-pilot/Pilot/Worker.h | 0 opt-pilot/Problems/FON.h | 0 opt-pilot/Problems/ProblemInterface.h | 0 opt-pilot/README.mkd | 0 opt-pilot/Simulation/FunctionEvaluator.cpp | 0 opt-pilot/Simulation/FunctionEvaluator.h | 0 opt-pilot/Simulation/GenerateOpalSimulation.h | 0 opt-pilot/Simulation/Simulation.h | 0 opt-pilot/Tests/CMakeLists.txt | 0 opt-pilot/Tests/CmdArgumentsTest.cpp | 0 opt-pilot/Tests/ExpressionTest.cpp | 0 opt-pilot/Tests/FromFileExpressionTest.cpp | 0 opt-pilot/Tests/HashNameGeneratorTest.cpp | 0 opt-pilot/Tests/Homotopy/Problem.in | 0 opt-pilot/Tests/IndividualTest.cpp | 0 opt-pilot/Tests/MPIHelperTest.cpp | 0 opt-pilot/Tests/ManagedIDsTest.cpp | 0 opt-pilot/Tests/Opal/FiPha3Opt1.data | 0 opt-pilot/Tests/Opal/FiPha3Opt1.tmpl | 0 .../fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat | 0 .../NEW_SINGLE_SOL_NOFRINGE_OPAL.dat | 0 opt-pilot/Tests/Opal/nsga2/nsga2_param.txt | 0 opt-pilot/Tests/OpalInputFileParserTest.cpp | 0 opt-pilot/Tests/PisaStandAlone/Problem.in | 0 .../PisaStandAlone/nsga2/nsga2_param.txt | 0 opt-pilot/Tests/PopulationTest.cpp | 0 opt-pilot/Tests/PythonExprTest.cpp | 0 opt-pilot/Tests/SDDSParserTest.cpp | 0 opt-pilot/Tests/SumErrSqExpressionTest.cpp | 0 opt-pilot/Tests/generatesim.cpp | 0 opt-pilot/Tests/gentest.data | 0 opt-pilot/Tests/gentest.tmpl | 0 opt-pilot/Tests/resources/fromfile_test.dat | 0 opt-pilot/Tests/resources/fromfile_test2.dat | 0 .../Tests/resources/measurement_test.dat | 0 opt-pilot/Tests/resources/test.in | 0 opt-pilot/Tests/resources/test.py | 0 opt-pilot/Tests/resources/test.stat | 0 opt-pilot/Tests/runsim.cpp | 0 opt-pilot/Tests/schedsim.cpp | 0 opt-pilot/Util/AsyncSendBuffers.h | 0 opt-pilot/Util/CMakeLists.txt | 0 opt-pilot/Util/CmdArguments.cpp | 0 opt-pilot/Util/CmdArguments.h | 0 .../Util/CommentAnnotatedInputFileParser.cpp | 0 .../Util/CommentAnnotatedInputFileParser.h | 0 opt-pilot/Util/HashNameGenerator.h | 0 opt-pilot/Util/InputFileParser.h | 0 opt-pilot/Util/MPIHelper.cpp | 0 opt-pilot/Util/MPIHelper.h | 0 opt-pilot/Util/ManagedIDs.h | 0 opt-pilot/Util/OpalInputFileParser.h | 0 opt-pilot/Util/OptPilotException.h | 0 opt-pilot/Util/PeakReader.cpp | 0 opt-pilot/Util/PeakReader.h | 0 opt-pilot/Util/PlainInputFileParser.h | 0 opt-pilot/Util/ProbeReader.cpp | 0 opt-pilot/Util/ProbeReader.h | 0 opt-pilot/Util/SDDSParser.cpp | 0 opt-pilot/Util/SDDSParser.h | 0 .../Util/SDDSParser/SDDSParserException.h | 0 opt-pilot/Util/SDDSParser/array.cpp | 0 opt-pilot/Util/SDDSParser/array.hpp | 0 opt-pilot/Util/SDDSParser/array_def.hpp | 0 opt-pilot/Util/SDDSParser/associate.cpp | 0 opt-pilot/Util/SDDSParser/associate.hpp | 0 opt-pilot/Util/SDDSParser/associate_def.hpp | 0 opt-pilot/Util/SDDSParser/ast.cpp | 0 opt-pilot/Util/SDDSParser/ast.hpp | 0 opt-pilot/Util/SDDSParser/ast_def.hpp | 0 opt-pilot/Util/SDDSParser/column.cpp | 0 opt-pilot/Util/SDDSParser/column.hpp | 0 opt-pilot/Util/SDDSParser/column_def.hpp | 0 opt-pilot/Util/SDDSParser/data.cpp | 0 opt-pilot/Util/SDDSParser/data.hpp | 0 opt-pilot/Util/SDDSParser/data_def.hpp | 0 opt-pilot/Util/SDDSParser/description.cpp | 0 opt-pilot/Util/SDDSParser/description.hpp | 0 opt-pilot/Util/SDDSParser/description_def.hpp | 0 opt-pilot/Util/SDDSParser/error_handler.hpp | 0 opt-pilot/Util/SDDSParser/file.cpp | 0 opt-pilot/Util/SDDSParser/file.hpp | 0 opt-pilot/Util/SDDSParser/file_def.hpp | 0 opt-pilot/Util/SDDSParser/include.cpp | 0 opt-pilot/Util/SDDSParser/include.hpp | 0 opt-pilot/Util/SDDSParser/include_def.hpp | 0 opt-pilot/Util/SDDSParser/parameter.cpp | 0 opt-pilot/Util/SDDSParser/parameter.hpp | 0 opt-pilot/Util/SDDSParser/parameter_def.hpp | 0 opt-pilot/Util/SDDSParser/skipper.hpp | 0 opt-pilot/Util/SDDSParser/version.cpp | 0 opt-pilot/Util/SDDSParser/version.hpp | 0 opt-pilot/Util/SDDSParser/version_def.hpp | 0 opt-pilot/Util/SDDSReader.h | 0 opt-pilot/Util/Statistics.h | 0 opt-pilot/Util/Trace/CoutSink.h | 0 opt-pilot/Util/Trace/FileSink.h | 0 opt-pilot/Util/Trace/MyPid.h | 0 opt-pilot/Util/Trace/Timestamp.h | 0 opt-pilot/Util/Trace/Trace.h | 0 opt-pilot/Util/Trace/TraceComponent.h | 0 opt-pilot/Util/Types.h | 0 opt-pilot/config.h.in | 0 opt-pilot/extlib/CMakeLists.txt | 0 opt-pilot/extlib/nsga2/PISA_cfg | 0 opt-pilot/extlib/nsga2/nsga2.c | 0 opt-pilot/extlib/nsga2/nsga2.h | 0 .../extlib/nsga2/nsga2_documentation.txt | 0 opt-pilot/extlib/nsga2/nsga2_functions.c | 0 opt-pilot/extlib/nsga2/nsga2_io.c | 0 opt-pilot/extlib/nsga2/nsga2_param.txt | 0 opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT | 0 opt-pilot/extlib/wfgHypervolume/LICENSE | 0 opt-pilot/extlib/wfgHypervolume/README.TXT | 0 opt-pilot/extlib/wfgHypervolume/avl.h | 0 opt-pilot/extlib/wfgHypervolume/wfg.h | 0 src/AbstractObjects/Action.cpp | 0 src/AbstractObjects/Action.h | 0 src/AbstractObjects/Attribute.cpp | 0 src/AbstractObjects/Attribute.h | 0 src/AbstractObjects/AttributeBase.cpp | 0 src/AbstractObjects/AttributeBase.h | 0 src/AbstractObjects/AttributeHandler.cpp | 0 src/AbstractObjects/AttributeHandler.h | 0 src/AbstractObjects/BeamSequence.cpp | 0 src/AbstractObjects/BeamSequence.h | 0 src/AbstractObjects/CMakeLists.txt | 0 src/AbstractObjects/Definition.cpp | 0 src/AbstractObjects/Definition.h | 0 src/AbstractObjects/Directory.cpp | 0 src/AbstractObjects/Directory.h | 0 src/AbstractObjects/Editor.cpp | 0 src/AbstractObjects/Editor.h | 0 src/AbstractObjects/Element.cpp | 0 src/AbstractObjects/Element.h | 0 src/AbstractObjects/Expressions.h | 0 src/AbstractObjects/Invalidator.cpp | 0 src/AbstractObjects/Invalidator.h | 0 src/AbstractObjects/Object.cpp | 0 src/AbstractObjects/Object.h | 0 src/AbstractObjects/ObjectFunction.cpp | 0 src/AbstractObjects/ObjectFunction.h | 0 src/AbstractObjects/OpalData.cpp | 0 src/AbstractObjects/OpalData.h | 0 src/AbstractObjects/PlaceRep.cpp | 0 src/AbstractObjects/PlaceRep.h | 0 src/AbstractObjects/RangeRep.cpp | 0 src/AbstractObjects/RangeRep.h | 0 src/AbstractObjects/Table.cpp | 0 src/AbstractObjects/Table.h | 0 src/AbstractObjects/TableRowRep.cpp | 0 src/AbstractObjects/TableRowRep.h | 0 src/AbstractObjects/ValueDefinition.cpp | 0 src/AbstractObjects/ValueDefinition.h | 0 src/Algebra/CMakeLists.txt | 0 src/Algebra/QRSolver.cpp | 0 src/Algebra/QRSolver.h | 0 src/Algorithms/AutophaseTracker.cpp | 0 src/Algorithms/AutophaseTracker.h | 0 src/Algorithms/BeamBeam3D.cpp | 0 src/Algorithms/BeamBeam3D.h | 0 src/Algorithms/CMakeLists.txt | 0 src/Algorithms/CavityAutophaser.cpp | 0 src/Algorithms/CavityAutophaser.h | 0 src/Algorithms/Ctunes.h | 0 src/Algorithms/Ctunes.hpp | 0 src/Algorithms/IndexMap.cpp | 0 src/Algorithms/IndexMap.h | 0 src/Algorithms/LieMapper.cpp | 0 src/Algorithms/LieMapper.h | 0 src/Algorithms/MPSplitIntegrator.cpp | 0 src/Algorithms/MPSplitIntegrator.h | 0 src/Algorithms/NilTracker.cpp | 0 src/Algorithms/NilTracker.h | 0 src/Algorithms/OrbitThreader.cpp | 0 src/Algorithms/OrbitThreader.h | 0 src/Algorithms/ParallelCyclotronTracker.cpp | 0 src/Algorithms/ParallelCyclotronTracker.h | 0 src/Algorithms/ParallelSliceTracker.cpp | 0 src/Algorithms/ParallelSliceTracker.h | 0 src/Algorithms/ParallelTTracker.cpp | 0 src/Algorithms/ParallelTTracker.h | 0 src/Algorithms/StatisticalErrors.cpp | 0 src/Algorithms/StatisticalErrors.h | 0 src/Algorithms/StatisticalErrorsUtilities.cpp | 0 src/Algorithms/StatisticalErrorsUtilities.h | 0 src/Algorithms/ThickMapper.cpp | 0 src/Algorithms/ThickMapper.h | 0 src/Algorithms/ThickTracker.cpp | 0 src/Algorithms/ThickTracker.h | 0 src/Algorithms/TransportMapper.cpp | 0 src/Algorithms/TransportMapper.h | 0 src/Algorithms/bet/BetError.cpp | 0 src/Algorithms/bet/BetError.h | 0 src/Algorithms/bet/EnvelopeBunch.cpp | 0 src/Algorithms/bet/EnvelopeBunch.h | 0 src/Algorithms/bet/EnvelopeSlice.cpp | 0 src/Algorithms/bet/EnvelopeSlice.h | 0 src/Algorithms/bet/error.cpp | 0 src/Algorithms/bet/error.h | 0 src/Algorithms/bet/math/functions.cpp | 0 src/Algorithms/bet/math/functions.h | 0 src/Algorithms/bet/math/integrate.cpp | 0 src/Algorithms/bet/math/integrate.h | 0 src/Algorithms/bet/math/interpol.cpp | 0 src/Algorithms/bet/math/interpol.h | 0 src/Algorithms/bet/math/linfit.cpp | 0 src/Algorithms/bet/math/linfit.h | 0 src/Algorithms/bet/math/rk.cpp | 0 src/Algorithms/bet/math/rk.h | 0 src/Algorithms/bet/math/root.cpp | 0 src/Algorithms/bet/math/root.h | 0 src/Algorithms/bet/math/savgol.cpp | 0 src/Algorithms/bet/math/savgol.h | 0 src/Algorithms/bet/math/sort.cpp | 0 src/Algorithms/bet/math/sort.h | 0 src/Algorithms/bet/math/svdfit.cpp | 0 src/Algorithms/bet/math/svdfit.h | 0 src/Algorithms/bet/profile.cpp | 0 src/Algorithms/bet/profile.h | 0 src/Algorithms/lomb.h | 0 src/Algorithms/lomb.hpp | 0 src/Amr/AbstractAmrWriter.h | 0 src/Amr/AmrBoxLib.cpp | 0 src/Amr/AmrBoxLib.h | 0 src/Amr/AmrBoxLib_F.h | 0 src/Amr/AmrDefs.h | 0 src/Amr/AmrObject.cpp | 0 src/Amr/AmrObject.h | 0 src/Amr/AmrPythonWriter.cpp | 0 src/Amr/AmrPythonWriter.h | 0 src/Amr/AmrSliceWriter.cpp | 0 src/Amr/AmrSliceWriter.h | 0 src/Amr/AmrYtWriter.cpp | 0 src/Amr/AmrYtWriter.h | 0 src/Amr/BoxLibLayout.h | 0 src/Amr/BoxLibLayout.hpp | 0 src/Amr/BoxLibParticle.h | 0 src/Amr/BoxLibParticle.hpp | 0 src/Amr/CMakeLists.txt | 0 src/Amr/Tagging_nd.f90 | 0 src/Aperture/Aperture.cpp | 0 src/Aperture/Aperture.h | 0 src/Aperture/CMakeLists.txt | 0 src/Aperture/Split.cpp | 0 src/Aperture/Split.h | 0 src/Attributes/Attributes.cpp | 0 src/Attributes/Attributes.h | 0 src/Attributes/Bool.cpp | 0 src/Attributes/Bool.h | 0 src/Attributes/BoolArray.cpp | 0 src/Attributes/BoolArray.h | 0 src/Attributes/CMakeLists.txt | 0 src/Attributes/Place.cpp | 0 src/Attributes/Place.h | 0 src/Attributes/Range.cpp | 0 src/Attributes/Range.h | 0 src/Attributes/Real.cpp | 0 src/Attributes/Real.h | 0 src/Attributes/RealArray.cpp | 0 src/Attributes/RealArray.h | 0 src/Attributes/Reference.cpp | 0 src/Attributes/Reference.h | 0 src/Attributes/StringArray.cpp | 0 src/Attributes/StringArray.h | 0 src/Attributes/TableRow.cpp | 0 src/Attributes/TableRow.h | 0 src/Attributes/TokenList.cpp | 0 src/Attributes/TokenList.h | 0 src/Attributes/TokenListArray.cpp | 0 src/Attributes/TokenListArray.h | 0 src/Attributes/opalstr.cpp | 0 src/Attributes/opalstr.h | 0 src/BasicActions/CMakeLists.txt | 0 src/BasicActions/Call.cpp | 0 src/BasicActions/Call.h | 0 src/BasicActions/Dump.cpp | 0 src/BasicActions/Dump.h | 0 src/BasicActions/DumpEMFields.cpp | 0 src/BasicActions/DumpEMFields.h | 0 src/BasicActions/DumpFields.cpp | 0 src/BasicActions/DumpFields.h | 0 src/BasicActions/Echo.cpp | 0 src/BasicActions/Echo.h | 0 src/BasicActions/Help.cpp | 0 src/BasicActions/Help.h | 0 src/BasicActions/Option.cpp | 0 src/BasicActions/Option.h | 0 src/BasicActions/PSystem.cpp | 0 src/BasicActions/PSystem.h | 0 src/BasicActions/Quit.cpp | 0 src/BasicActions/Quit.h | 0 src/BasicActions/Save.cpp | 0 src/BasicActions/Save.h | 0 src/BasicActions/Select.cpp | 0 src/BasicActions/Select.h | 0 src/BasicActions/Show.cpp | 0 src/BasicActions/Show.h | 0 src/BasicActions/Stop.cpp | 0 src/BasicActions/Stop.h | 0 src/BasicActions/System.cpp | 0 src/BasicActions/System.h | 0 src/BasicActions/Title.cpp | 0 src/BasicActions/Title.h | 0 src/BasicActions/Value.cpp | 0 src/BasicActions/Value.h | 0 src/BasicActions/What.cpp | 0 src/BasicActions/What.h | 0 src/CMakeLists.txt | 0 src/Classic/AbsBeamline/AlignWrapper.cpp | 0 src/Classic/AbsBeamline/AlignWrapper.h | 0 src/Classic/AbsBeamline/AttributeSet.cpp | 0 src/Classic/AbsBeamline/AttributeSet.h | 0 src/Classic/AbsBeamline/BeamBeam.cpp | 0 src/Classic/AbsBeamline/BeamBeam.h | 0 src/Classic/AbsBeamline/BeamlineVisitor.cpp | 0 src/Classic/AbsBeamline/BeamlineVisitor.h | 0 src/Classic/AbsBeamline/Bend.cpp | 0 src/Classic/AbsBeamline/Bend.h | 0 src/Classic/AbsBeamline/BendBase.cpp | 0 src/Classic/AbsBeamline/BendBase.h | 0 src/Classic/AbsBeamline/CMakeLists.txt | 0 src/Classic/AbsBeamline/Collimator.cpp | 0 src/Classic/AbsBeamline/Collimator.h | 0 src/Classic/AbsBeamline/Component.cpp | 0 src/Classic/AbsBeamline/Component.h | 0 src/Classic/AbsBeamline/Corrector.cpp | 0 src/Classic/AbsBeamline/Corrector.h | 0 src/Classic/AbsBeamline/Cyclotron.cpp | 0 src/Classic/AbsBeamline/Cyclotron.h | 0 src/Classic/AbsBeamline/CyclotronValley.cpp | 0 src/Classic/AbsBeamline/CyclotronValley.h | 0 src/Classic/AbsBeamline/Degrader.cpp | 0 src/Classic/AbsBeamline/Degrader.h | 0 src/Classic/AbsBeamline/Diagnostic.cpp | 0 src/Classic/AbsBeamline/Diagnostic.h | 0 src/Classic/AbsBeamline/Drift.cpp | 0 src/Classic/AbsBeamline/Drift.h | 0 src/Classic/AbsBeamline/ElementBase.cpp | 0 src/Classic/AbsBeamline/ElementBase.h | 0 src/Classic/AbsBeamline/ElementImage.cpp | 0 src/Classic/AbsBeamline/ElementImage.h | 0 .../AbsBeamline/EndFieldModel/CMakeLists.txt | 0 .../EndFieldModel/EndFieldModel.cpp | 0 .../AbsBeamline/EndFieldModel/EndFieldModel.h | 0 .../AbsBeamline/EndFieldModel/Enge.cpp | 0 src/Classic/AbsBeamline/EndFieldModel/Enge.h | 0 .../AbsBeamline/EndFieldModel/Tanh.cpp | 0 src/Classic/AbsBeamline/EndFieldModel/Tanh.h | 0 src/Classic/AbsBeamline/Integrator.cpp | 0 src/Classic/AbsBeamline/Integrator.h | 0 src/Classic/AbsBeamline/Lambertson.cpp | 0 src/Classic/AbsBeamline/Lambertson.h | 0 src/Classic/AbsBeamline/Marker.cpp | 0 src/Classic/AbsBeamline/Marker.h | 0 src/Classic/AbsBeamline/Monitor.cpp | 0 src/Classic/AbsBeamline/Monitor.h | 0 src/Classic/AbsBeamline/Multipole.cpp | 0 src/Classic/AbsBeamline/Multipole.h | 0 src/Classic/AbsBeamline/MultipoleT.cpp | 0 src/Classic/AbsBeamline/MultipoleT.h | 0 src/Classic/AbsBeamline/MultipoleT.png | Bin src/Classic/AbsBeamline/Offset.cpp | 0 src/Classic/AbsBeamline/Offset.h | 0 src/Classic/AbsBeamline/ParallelPlate.cpp | 0 src/Classic/AbsBeamline/ParallelPlate.h | 0 src/Classic/AbsBeamline/Patch.cpp | 0 src/Classic/AbsBeamline/Patch.h | 0 src/Classic/AbsBeamline/Probe.cpp | 0 src/Classic/AbsBeamline/Probe.h | 0 src/Classic/AbsBeamline/RBend.cpp | 0 src/Classic/AbsBeamline/RBend.h | 0 src/Classic/AbsBeamline/RBend3D.cpp | 0 src/Classic/AbsBeamline/RBend3D.h | 0 src/Classic/AbsBeamline/RFCavity.cpp | 0 src/Classic/AbsBeamline/RFCavity.h | 0 src/Classic/AbsBeamline/RFQuadrupole.cpp | 0 src/Classic/AbsBeamline/RFQuadrupole.h | 0 src/Classic/AbsBeamline/Ring.cpp | 0 src/Classic/AbsBeamline/Ring.h | 0 src/Classic/AbsBeamline/SBend.cpp | 0 src/Classic/AbsBeamline/SBend.h | 0 src/Classic/AbsBeamline/SBend3D.cpp | 0 src/Classic/AbsBeamline/SBend3D.h | 0 src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp | 0 src/Classic/AbsBeamline/ScalingFFAGMagnet.h | 0 .../AbsBeamline/SectorFieldMapComponent.h | 0 src/Classic/AbsBeamline/Separator.cpp | 0 src/Classic/AbsBeamline/Separator.h | 0 src/Classic/AbsBeamline/Septum.cpp | 0 src/Classic/AbsBeamline/Septum.h | 0 src/Classic/AbsBeamline/Solenoid.cpp | 0 src/Classic/AbsBeamline/Solenoid.h | 0 src/Classic/AbsBeamline/Source.cpp | 0 src/Classic/AbsBeamline/Source.h | 0 .../AbsBeamline/SpecificElementVisitor.h | 0 src/Classic/AbsBeamline/Stripper.cpp | 0 src/Classic/AbsBeamline/Stripper.h | 0 src/Classic/AbsBeamline/TravelingWave.cpp | 0 src/Classic/AbsBeamline/TravelingWave.h | 0 src/Classic/AbsBeamline/VariableRFCavity.cpp | 0 src/Classic/AbsBeamline/VariableRFCavity.h | 0 src/Classic/AbsBeamline/multipole_t.tex | 0 src/Classic/Algebra/Array1D.h | 0 src/Classic/Algebra/Array2D.h | 0 src/Classic/Algebra/CMakeLists.txt | 0 src/Classic/Algebra/ComplexEigen.cpp | 0 src/Classic/Algebra/ComplexEigen.h | 0 src/Classic/Algebra/DoubleEigen.cpp | 0 src/Classic/Algebra/DoubleEigen.h | 0 src/Classic/Algebra/DynamicFixedPoint.cpp | 0 src/Classic/Algebra/DynamicFixedPoint.h | 0 src/Classic/Algebra/LUMatrix.h | 0 src/Classic/Algebra/LieMap.h | 0 src/Classic/Algebra/Matrix.h | 0 src/Classic/Algebra/NormalForm.cpp | 0 src/Classic/Algebra/NormalForm.h | 0 src/Classic/Algebra/SliceIterator.h | 0 src/Classic/Algebra/StaticFixedPoint.cpp | 0 src/Classic/Algebra/StaticFixedPoint.h | 0 src/Classic/Algebra/Tps.cpp | 0 src/Classic/Algebra/Tps.h | 0 src/Classic/Algebra/TpsComplex.cpp | 0 src/Classic/Algebra/TpsData.cpp | 0 src/Classic/Algebra/TpsData.h | 0 src/Classic/Algebra/TpsDouble.cpp | 0 src/Classic/Algebra/TpsMath.h | 0 src/Classic/Algebra/TpsMonomial.cpp | 0 src/Classic/Algebra/TpsMonomial.h | 0 src/Classic/Algebra/TpsSubstitution.h | 0 src/Classic/Algebra/TpsTps.cpp | 0 src/Classic/Algebra/Vector.h | 0 src/Classic/Algebra/Vps.cpp | 0 src/Classic/Algebra/Vps.h | 0 src/Classic/Algebra/VpsInvMap.h | 0 src/Classic/Algebra/VpsMap.h | 0 src/Classic/Algorithms/AbstractMapper.cpp | 0 src/Classic/Algorithms/AbstractMapper.h | 0 .../Algorithms/AbstractTimeDependence.cpp | 0 .../Algorithms/AbstractTimeDependence.h | 0 src/Classic/Algorithms/AbstractTracker.cpp | 0 src/Classic/Algorithms/AbstractTracker.h | 0 src/Classic/Algorithms/AmrPartBunch.cpp | 0 src/Classic/Algorithms/AmrPartBunch.h | 0 src/Classic/Algorithms/CMakeLists.txt | 0 .../Algorithms/CoordinateSystemTrafo.cpp | 0 .../Algorithms/CoordinateSystemTrafo.h | 0 src/Classic/Algorithms/DefaultVisitor.cpp | 0 src/Classic/Algorithms/DefaultVisitor.h | 0 src/Classic/Algorithms/Flagger.cpp | 0 src/Classic/Algorithms/Flagger.h | 0 src/Classic/Algorithms/IdealMapper.cpp | 0 src/Classic/Algorithms/IdealMapper.h | 0 src/Classic/Algorithms/LinearMapper.cpp | 0 src/Classic/Algorithms/LinearMapper.h | 0 src/Classic/Algorithms/ListElem.h | 0 src/Classic/Algorithms/MapIntegrator.cpp | 0 src/Classic/Algorithms/MapIntegrator.h | 0 src/Classic/Algorithms/Mapper.cpp | 0 src/Classic/Algorithms/Mapper.h | 0 src/Classic/Algorithms/OpalParticle.cpp | 0 src/Classic/Algorithms/OpalParticle.h | 0 src/Classic/Algorithms/OrbitTracker.cpp | 0 src/Classic/Algorithms/OrbitTracker.h | 0 src/Classic/Algorithms/PBunchDefs.h | 0 src/Classic/Algorithms/PartBins.cpp | 0 src/Classic/Algorithms/PartBins.h | 0 src/Classic/Algorithms/PartBinsCyc.cpp | 0 src/Classic/Algorithms/PartBinsCyc.h | 0 src/Classic/Algorithms/PartBunch.cpp | 0 src/Classic/Algorithms/PartBunch.h | 0 src/Classic/Algorithms/PartBunchBase.h | 0 src/Classic/Algorithms/PartBunchBase.hpp | 0 src/Classic/Algorithms/PartData.cpp | 0 src/Classic/Algorithms/PartData.h | 0 .../Algorithms/PolynomialTimeDependence.cpp | 0 .../Algorithms/PolynomialTimeDependence.h | 0 src/Classic/Algorithms/Quaternion.cpp | 0 src/Classic/Algorithms/Quaternion.h | 0 src/Classic/Algorithms/Surveyor.cpp | 0 src/Classic/Algorithms/Surveyor.h | 0 src/Classic/Algorithms/ThinMapper.cpp | 0 src/Classic/Algorithms/ThinMapper.h | 0 src/Classic/Algorithms/ThinTracker.cpp | 0 src/Classic/Algorithms/ThinTracker.h | 0 src/Classic/Algorithms/TrackIntegrator.cpp | 0 src/Classic/Algorithms/TrackIntegrator.h | 0 src/Classic/Algorithms/Tracker.cpp | 0 src/Classic/Algorithms/Tracker.h | 0 src/Classic/Algorithms/Vektor.h | 0 src/Classic/Algorithms/rbendmap.h | 0 src/Classic/BeamlineCore/BeamBeamRep.cpp | 0 src/Classic/BeamlineCore/BeamBeamRep.h | 0 src/Classic/BeamlineCore/CMakeLists.txt | 0 src/Classic/BeamlineCore/CollimatorRep.cpp | 0 src/Classic/BeamlineCore/CollimatorRep.h | 0 src/Classic/BeamlineCore/CorrectorRep.cpp | 0 src/Classic/BeamlineCore/CorrectorRep.h | 0 src/Classic/BeamlineCore/CyclotronRep.cpp | 0 src/Classic/BeamlineCore/CyclotronRep.h | 0 .../BeamlineCore/CyclotronValleyRep.cpp | 0 src/Classic/BeamlineCore/CyclotronValleyRep.h | 0 src/Classic/BeamlineCore/DegraderRep.cpp | 0 src/Classic/BeamlineCore/DegraderRep.h | 0 src/Classic/BeamlineCore/DriftRep.cpp | 0 src/Classic/BeamlineCore/DriftRep.h | 0 src/Classic/BeamlineCore/MarkerRep.cpp | 0 src/Classic/BeamlineCore/MarkerRep.h | 0 src/Classic/BeamlineCore/MonitorRep.cpp | 0 src/Classic/BeamlineCore/MonitorRep.h | 0 src/Classic/BeamlineCore/MultipoleRep.cpp | 0 src/Classic/BeamlineCore/MultipoleRep.h | 0 src/Classic/BeamlineCore/Octupole.cpp | 0 src/Classic/BeamlineCore/Octupole.h | 0 src/Classic/BeamlineCore/ParallelPlateRep.cpp | 0 src/Classic/BeamlineCore/ParallelPlateRep.h | 0 src/Classic/BeamlineCore/PatchRep.cpp | 0 src/Classic/BeamlineCore/PatchRep.h | 0 src/Classic/BeamlineCore/ProbeRep.cpp | 0 src/Classic/BeamlineCore/ProbeRep.h | 0 src/Classic/BeamlineCore/Quadrupole.cpp | 0 src/Classic/BeamlineCore/Quadrupole.h | 0 src/Classic/BeamlineCore/RBendRep.cpp | 0 src/Classic/BeamlineCore/RBendRep.h | 0 src/Classic/BeamlineCore/RFCavityRep.cpp | 0 src/Classic/BeamlineCore/RFCavityRep.h | 0 src/Classic/BeamlineCore/SBendRep.cpp | 0 src/Classic/BeamlineCore/SBendRep.h | 0 src/Classic/BeamlineCore/SeparatorRep.cpp | 0 src/Classic/BeamlineCore/SeparatorRep.h | 0 src/Classic/BeamlineCore/SeptumRep.cpp | 0 src/Classic/BeamlineCore/SeptumRep.h | 0 src/Classic/BeamlineCore/Sextupole.cpp | 0 src/Classic/BeamlineCore/Sextupole.h | 0 src/Classic/BeamlineCore/SingleMultipole.h | 0 src/Classic/BeamlineCore/SkewOctupole.cpp | 0 src/Classic/BeamlineCore/SkewOctupole.h | 0 src/Classic/BeamlineCore/SkewQuadrupole.cpp | 0 src/Classic/BeamlineCore/SkewQuadrupole.h | 0 src/Classic/BeamlineCore/SkewSextupole.cpp | 0 src/Classic/BeamlineCore/SkewSextupole.h | 0 src/Classic/BeamlineCore/SolenoidRep.cpp | 0 src/Classic/BeamlineCore/SolenoidRep.h | 0 src/Classic/BeamlineCore/SourceRep.cpp | 0 src/Classic/BeamlineCore/SourceRep.h | 0 src/Classic/BeamlineCore/StripperRep.cpp | 0 src/Classic/BeamlineCore/StripperRep.h | 0 src/Classic/BeamlineCore/TravelingWaveRep.cpp | 0 src/Classic/BeamlineCore/TravelingWaveRep.h | 0 src/Classic/BeamlineCore/XCorrectorRep.cpp | 0 src/Classic/BeamlineCore/XCorrectorRep.h | 0 src/Classic/BeamlineCore/XMonitorRep.cpp | 0 src/Classic/BeamlineCore/XMonitorRep.h | 0 src/Classic/BeamlineCore/YCorrectorRep.cpp | 0 src/Classic/BeamlineCore/YCorrectorRep.h | 0 src/Classic/BeamlineCore/YMonitorRep.cpp | 0 src/Classic/BeamlineCore/YMonitorRep.h | 0 src/Classic/BeamlineGeometry/CMakeLists.txt | 0 src/Classic/BeamlineGeometry/Euclid3D.cpp | 0 src/Classic/BeamlineGeometry/Euclid3D.h | 0 .../BeamlineGeometry/Euclid3DGeometry.cpp | 0 .../BeamlineGeometry/Euclid3DGeometry.h | 0 src/Classic/BeamlineGeometry/Geometry.cpp | 0 src/Classic/BeamlineGeometry/Geometry.h | 0 src/Classic/BeamlineGeometry/Matrix3D.cpp | 0 src/Classic/BeamlineGeometry/Matrix3D.h | 0 src/Classic/BeamlineGeometry/NullGeometry.cpp | 0 src/Classic/BeamlineGeometry/NullGeometry.h | 0 .../BeamlineGeometry/OffsetGeometry.cpp | 0 src/Classic/BeamlineGeometry/OffsetGeometry.h | 0 .../BeamlineGeometry/PlanarArcGeometry.cpp | 0 .../BeamlineGeometry/PlanarArcGeometry.h | 0 .../BeamlineGeometry/RBendGeometry.cpp | 0 src/Classic/BeamlineGeometry/RBendGeometry.h | 0 src/Classic/BeamlineGeometry/Rotation3D.cpp | 0 src/Classic/BeamlineGeometry/Rotation3D.h | 0 .../BeamlineGeometry/SRotatedGeometry.cpp | 0 .../BeamlineGeometry/SRotatedGeometry.h | 0 .../BeamlineGeometry/StraightGeometry.cpp | 0 .../BeamlineGeometry/StraightGeometry.h | 0 src/Classic/BeamlineGeometry/Vector3D.cpp | 0 src/Classic/BeamlineGeometry/Vector3D.h | 0 src/Classic/Beamlines/Beamline.cpp | 0 src/Classic/Beamlines/Beamline.h | 0 src/Classic/Beamlines/BeamlineGeometry.cpp | 0 src/Classic/Beamlines/BeamlineGeometry.h | 0 src/Classic/Beamlines/CMakeLists.txt | 0 src/Classic/Beamlines/ElmPtr.cpp | 0 src/Classic/Beamlines/ElmPtr.h | 0 src/Classic/Beamlines/FlaggedBeamline.cpp | 0 src/Classic/Beamlines/FlaggedBeamline.h | 0 src/Classic/Beamlines/FlaggedElmPtr.cpp | 0 src/Classic/Beamlines/FlaggedElmPtr.h | 0 src/Classic/Beamlines/SimpleBeamline.cpp | 0 src/Classic/Beamlines/SimpleBeamline.h | 0 src/Classic/Beamlines/TBeamline.h | 0 src/Classic/CMakeLists.txt | 0 src/Classic/Channels/CMakeLists.txt | 0 src/Classic/Channels/Channel.cpp | 0 src/Classic/Channels/Channel.h | 0 src/Classic/Channels/ConstChannel.cpp | 0 src/Classic/Channels/ConstChannel.h | 0 src/Classic/Channels/DirectChannel.h | 0 src/Classic/Channels/IndexedChannel.h | 0 src/Classic/Channels/IndirectChannel.h | 0 src/Classic/ComponentWrappers/CMakeLists.txt | 0 .../ComponentWrappers/CorrectorWrapper.cpp | 0 .../ComponentWrappers/CorrectorWrapper.h | 0 .../ComponentWrappers/CyclotronWrapper.cpp | 0 .../ComponentWrappers/CyclotronWrapper.h | 0 .../ComponentWrappers/MultipoleWrapper.cpp | 0 .../ComponentWrappers/MultipoleWrapper.h | 0 .../ComponentWrappers/RBendWrapper.cpp | 0 src/Classic/ComponentWrappers/RBendWrapper.h | 0 .../ComponentWrappers/SBendWrapper.cpp | 0 src/Classic/ComponentWrappers/SBendWrapper.h | 0 src/Classic/Construction/CMakeLists.txt | 0 src/Classic/Construction/ElementFactory.cpp | 0 src/Classic/Construction/ElementFactory.h | 0 src/Classic/Construction/Factory.cpp | 0 src/Classic/Construction/Factory.h | 0 src/Classic/DipoleFieldTest.cpp | 0 src/Classic/Fields/AcceleratingField.h | 0 src/Classic/Fields/Astra1DDynamic.cpp | 0 src/Classic/Fields/Astra1DDynamic.h | 0 src/Classic/Fields/Astra1DDynamic_fast.cpp | 0 src/Classic/Fields/Astra1DDynamic_fast.h | 0 src/Classic/Fields/Astra1DElectroStatic.cpp | 0 src/Classic/Fields/Astra1DElectroStatic.h | 0 .../Fields/Astra1DElectroStatic_fast.cpp | 0 .../Fields/Astra1DElectroStatic_fast.h | 0 src/Classic/Fields/Astra1DMagnetoStatic.cpp | 0 src/Classic/Fields/Astra1DMagnetoStatic.h | 0 .../Fields/Astra1DMagnetoStatic_fast.cpp | 0 .../Fields/Astra1DMagnetoStatic_fast.h | 0 src/Classic/Fields/Astra1D_fast.cpp | 0 src/Classic/Fields/Astra1D_fast.h | 0 src/Classic/Fields/BDipoleField.cpp | 0 src/Classic/Fields/BDipoleField.h | 0 src/Classic/Fields/BMultipoleField.cpp | 0 src/Classic/Fields/BMultipoleField.h | 0 src/Classic/Fields/BSingleMultipoleField.h | 0 src/Classic/Fields/CMakeLists.txt | 0 src/Classic/Fields/ConstBField.cpp | 0 src/Classic/Fields/ConstBField.h | 0 src/Classic/Fields/ConstBzField.cpp | 0 src/Classic/Fields/ConstBzField.h | 0 src/Classic/Fields/ConstEField.cpp | 0 src/Classic/Fields/ConstEField.h | 0 src/Classic/Fields/ConstEzField.cpp | 0 src/Classic/Fields/ConstEzField.h | 0 src/Classic/Fields/EDipoleField.cpp | 0 src/Classic/Fields/EDipoleField.h | 0 src/Classic/Fields/EMField.cpp | 0 src/Classic/Fields/EMField.h | 0 src/Classic/Fields/FM1DDynamic.cpp | 0 src/Classic/Fields/FM1DDynamic.h | 0 src/Classic/Fields/FM1DDynamic_fast.cpp | 0 src/Classic/Fields/FM1DDynamic_fast.h | 0 src/Classic/Fields/FM1DElectroStatic.cpp | 0 src/Classic/Fields/FM1DElectroStatic.h | 0 src/Classic/Fields/FM1DElectroStatic_fast.cpp | 0 src/Classic/Fields/FM1DElectroStatic_fast.h | 0 src/Classic/Fields/FM1DMagnetoStatic.cpp | 0 src/Classic/Fields/FM1DMagnetoStatic.h | 0 src/Classic/Fields/FM1DMagnetoStatic_fast.cpp | 0 src/Classic/Fields/FM1DMagnetoStatic_fast.h | 0 src/Classic/Fields/FM1DProfile1.cpp | 0 src/Classic/Fields/FM1DProfile1.h | 0 src/Classic/Fields/FM1DProfile2.cpp | 0 src/Classic/Fields/FM1DProfile2.h | 0 src/Classic/Fields/FM2DDynamic.cpp | 0 src/Classic/Fields/FM2DDynamic.h | 0 src/Classic/Fields/FM2DElectroStatic.cpp | 0 src/Classic/Fields/FM2DElectroStatic.h | 0 src/Classic/Fields/FM2DMagnetoStatic.cpp | 0 src/Classic/Fields/FM2DMagnetoStatic.h | 0 src/Classic/Fields/FM3DDynamic.cpp | 0 src/Classic/Fields/FM3DDynamic.h | 0 src/Classic/Fields/FM3DH5Block.cpp | 0 src/Classic/Fields/FM3DH5Block.h | 0 src/Classic/Fields/FM3DH5Block_nonscale.cpp | 0 src/Classic/Fields/FM3DH5Block_nonscale.h | 0 src/Classic/Fields/FM3DMagnetoStatic.cpp | 0 src/Classic/Fields/FM3DMagnetoStatic.h | 0 .../Fields/FM3DMagnetoStaticExtended.cpp | 0 .../Fields/FM3DMagnetoStaticExtended.h | 0 .../Fields/FM3DMagnetoStaticH5Block.cpp | 0 src/Classic/Fields/FM3DMagnetoStaticH5Block.h | 0 src/Classic/Fields/FMDummy.cpp | 0 src/Classic/Fields/FMDummy.h | 0 src/Classic/Fields/Fieldmap.cpp | 0 src/Classic/Fields/Fieldmap.h | 0 src/Classic/Fields/Fieldmap.hpp | 0 .../Fields/Interpolation/CMakeLists.txt | 0 .../Interpolation/Interpolator3dGridTo1d.cpp | 0 .../Interpolation/Interpolator3dGridTo1d.h | 0 .../Interpolation/Interpolator3dGridTo3d.cpp | 0 .../Interpolation/Interpolator3dGridTo3d.h | 0 src/Classic/Fields/Interpolation/MMatrix.cpp | 0 src/Classic/Fields/Interpolation/MMatrix.h | 0 src/Classic/Fields/Interpolation/MVector.cpp | 0 src/Classic/Fields/Interpolation/MVector.h | 0 src/Classic/Fields/Interpolation/Mesh-inl.icc | 0 src/Classic/Fields/Interpolation/Mesh.cpp | 0 src/Classic/Fields/Interpolation/Mesh.h | 0 src/Classic/Fields/Interpolation/NDGrid.cpp | 0 src/Classic/Fields/Interpolation/NDGrid.h | 0 .../Fields/Interpolation/PPSolveFactory.cpp | 0 .../Fields/Interpolation/PPSolveFactory.h | 0 .../Interpolation/PolynomialCoefficient.cpp | 0 .../Interpolation/PolynomialCoefficient.h | 0 .../Fields/Interpolation/PolynomialPatch.cpp | 0 .../Fields/Interpolation/PolynomialPatch.h | 0 .../Fields/Interpolation/SolveFactory.cpp | 0 .../Fields/Interpolation/SolveFactory.h | 0 .../Interpolation/SquarePolynomialVector.cpp | 0 .../Interpolation/SquarePolynomialVector.h | 0 .../Fields/Interpolation/ThreeDGrid.cpp | 0 src/Classic/Fields/Interpolation/ThreeDGrid.h | 0 .../Interpolation/TriLinearInterpolator.cpp | 0 .../Interpolation/TriLinearInterpolator.h | 0 src/Classic/Fields/Interpolation/TwoDGrid.cpp | 0 src/Classic/Fields/Interpolation/TwoDGrid.h | 0 .../Fields/Interpolation/VectorMap.cpp | 0 src/Classic/Fields/Interpolation/VectorMap.h | 0 .../polynomial_solve_with_smoothing.tex | 0 src/Classic/Fields/NullField.cpp | 0 src/Classic/Fields/NullField.h | 0 src/Classic/Fields/OscillatingField.h | 0 src/Classic/Fields/SectorField.cpp | 0 src/Classic/Fields/SectorField.h | 0 src/Classic/Fields/SectorMagneticFieldMap.cpp | 0 src/Classic/Fields/SectorMagneticFieldMap.h | 0 src/Classic/Fields/StaticElectricField.cpp | 0 src/Classic/Fields/StaticElectricField.h | 0 src/Classic/Fields/StaticMagneticField.cpp | 0 src/Classic/Fields/StaticMagneticField.h | 0 src/Classic/Filters/CMakeLists.txt | 0 src/Classic/Filters/Filter.h | 0 src/Classic/Filters/Filters.h | 0 src/Classic/Filters/FixedFFTLowPass.cpp | 0 src/Classic/Filters/FixedFFTLowPass.h | 0 src/Classic/Filters/RelativeFFTLowPass.cpp | 0 src/Classic/Filters/RelativeFFTLowPass.h | 0 src/Classic/Filters/SavitzkyGolay.cpp | 0 src/Classic/Filters/SavitzkyGolay.h | 0 src/Classic/Filters/Stencil.cpp | 0 src/Classic/Filters/Stencil.h | 0 src/Classic/FixedAlgebra/CMakeLists.txt | 0 src/Classic/FixedAlgebra/DragtFinnMap.cpp | 0 src/Classic/FixedAlgebra/DragtFinnMap.h | 0 .../FixedAlgebra/DragtFinnNormalForm.h | 0 src/Classic/FixedAlgebra/FArray1D.h | 0 src/Classic/FixedAlgebra/FArray2D.h | 0 src/Classic/FixedAlgebra/FComplexEigen.h | 0 src/Classic/FixedAlgebra/FDoubleEigen.h | 0 src/Classic/FixedAlgebra/FDynamicFP.h | 0 src/Classic/FixedAlgebra/FLUMatrix.h | 0 src/Classic/FixedAlgebra/FLieGenerator.cpp | 0 src/Classic/FixedAlgebra/FLieGenerator.h | 0 src/Classic/FixedAlgebra/FMatrix.h | 0 src/Classic/FixedAlgebra/FMonomial.h | 0 src/Classic/FixedAlgebra/FNormalForm.h | 0 src/Classic/FixedAlgebra/FSlice.h | 0 src/Classic/FixedAlgebra/FStaticFP.h | 0 src/Classic/FixedAlgebra/FTps.cpp | 0 src/Classic/FixedAlgebra/FTps.h | 0 src/Classic/FixedAlgebra/FTpsData.h | 0 src/Classic/FixedAlgebra/FTpsMath.h | 0 src/Classic/FixedAlgebra/FVector.h | 0 src/Classic/FixedAlgebra/FVps.cpp | 0 src/Classic/FixedAlgebra/FVps.h | 0 src/Classic/FixedAlgebra/LinearFun.cpp | 0 src/Classic/FixedAlgebra/LinearFun.h | 0 src/Classic/FixedAlgebra/LinearMap.cpp | 0 src/Classic/FixedAlgebra/LinearMap.h | 0 src/Classic/FixedAlgebra/LinearMath.h | 0 src/Classic/FixedAlgebra/Taylor.cpp | 0 src/Classic/FixedAlgebra/Taylor.h | 0 src/Classic/FixedAlgebra/TransportFun.cpp | 0 src/Classic/FixedAlgebra/TransportFun.h | 0 src/Classic/FixedAlgebra/TransportMap.cpp | 0 src/Classic/FixedAlgebra/TransportMap.h | 0 src/Classic/FixedAlgebra/TransportMath.h | 0 src/Classic/Main.cpp | 0 src/Classic/MemoryManagement/CMakeLists.txt | 0 src/Classic/MemoryManagement/OwnPtr.h | 0 src/Classic/MemoryManagement/Pointer.h | 0 src/Classic/MemoryManagement/RCObject.h | 0 src/Classic/Parser/AbsFileStream.cpp | 0 src/Classic/Parser/AbsFileStream.h | 0 src/Classic/Parser/CMakeLists.txt | 0 src/Classic/Parser/FileStream.cpp | 0 src/Classic/Parser/FileStream.h | 0 src/Classic/Parser/Parser.h | 0 src/Classic/Parser/SimpleStatement.cpp | 0 src/Classic/Parser/SimpleStatement.h | 0 src/Classic/Parser/Statement.cpp | 0 src/Classic/Parser/Statement.h | 0 src/Classic/Parser/StringStream.cpp | 0 src/Classic/Parser/StringStream.h | 0 src/Classic/Parser/TerminalStream.cpp | 0 src/Classic/Parser/TerminalStream.h | 0 src/Classic/Parser/Token.cpp | 0 src/Classic/Parser/Token.h | 0 src/Classic/Parser/TokenStream.cpp | 0 src/Classic/Parser/TokenStream.h | 0 src/Classic/Physics/CMakeLists.txt | 0 src/Classic/Physics/Physics.h | 0 src/Classic/ReadMe | 0 src/Classic/Solvers/CMakeLists.txt | 0 src/Classic/Solvers/CSRIGFWakeFunction.cpp | 0 src/Classic/Solvers/CSRIGFWakeFunction.hh | 0 src/Classic/Solvers/CSRWakeFunction.cpp | 0 src/Classic/Solvers/CSRWakeFunction.hh | 0 src/Classic/Solvers/CollimatorPhysics.cpp | 0 src/Classic/Solvers/CollimatorPhysics.hh | 0 src/Classic/Solvers/GreenWakeFunction.cpp | 0 src/Classic/Solvers/GreenWakeFunction.hh | 0 .../ParticleMatterInteractionHandler.hh | 0 src/Classic/Solvers/TestLambda.h | 0 src/Classic/Solvers/WakeFunction.hh | 0 src/Classic/Structure/CMakeLists.txt | 0 src/Classic/Structure/LossDataSink.cpp | 0 src/Classic/Structure/LossDataSink.h | 0 src/Classic/Structure/MeshGenerator.cpp | 0 src/Classic/Structure/MeshGenerator.h | 0 src/Classic/Structure/PeakFinder.cpp | 0 src/Classic/Structure/PeakFinder.h | 0 src/Classic/Utilities/ArithmeticError.cpp | 0 src/Classic/Utilities/ArithmeticError.h | 0 src/Classic/Utilities/AttributeError.cpp | 0 src/Classic/Utilities/AttributeError.h | 0 src/Classic/Utilities/CLRangeError.cpp | 0 src/Classic/Utilities/CLRangeError.h | 0 src/Classic/Utilities/CMakeLists.txt | 0 src/Classic/Utilities/ClassicException.cpp | 0 src/Classic/Utilities/ClassicException.h | 0 src/Classic/Utilities/ClassicField.cpp | 0 src/Classic/Utilities/ClassicField.h | 0 src/Classic/Utilities/ClassicRandom.cpp | 0 src/Classic/Utilities/ClassicRandom.h | 0 src/Classic/Utilities/ComplexErrorFun.cpp | 0 src/Classic/Utilities/ComplexErrorFun.h | 0 src/Classic/Utilities/ConvergenceError.cpp | 0 src/Classic/Utilities/ConvergenceError.h | 0 src/Classic/Utilities/DivideError.cpp | 0 src/Classic/Utilities/DivideError.h | 0 src/Classic/Utilities/DomainError.cpp | 0 src/Classic/Utilities/DomainError.h | 0 src/Classic/Utilities/EigenvalueError.cpp | 0 src/Classic/Utilities/EigenvalueError.h | 0 src/Classic/Utilities/FormatError.cpp | 0 src/Classic/Utilities/FormatError.h | 0 src/Classic/Utilities/Gauss.cpp | 0 src/Classic/Utilities/Gauss.h | 0 .../Utilities/GeneralClassicException.cpp | 0 .../Utilities/GeneralClassicException.h | 0 src/Classic/Utilities/InverseGauss.cpp | 0 src/Classic/Utilities/InverseGauss.h | 0 src/Classic/Utilities/LogicalError.cpp | 0 src/Classic/Utilities/LogicalError.h | 0 src/Classic/Utilities/NormalFormError.cpp | 0 src/Classic/Utilities/NormalFormError.h | 0 src/Classic/Utilities/OptionTypes.h | 0 src/Classic/Utilities/Options.cpp | 0 src/Classic/Utilities/Options.h | 0 src/Classic/Utilities/OverflowError.cpp | 0 src/Classic/Utilities/OverflowError.h | 0 src/Classic/Utilities/ParseError.cpp | 0 src/Classic/Utilities/ParseError.h | 0 src/Classic/Utilities/RingSection.cpp | 0 src/Classic/Utilities/RingSection.h | 0 src/Classic/Utilities/SingularMatrixError.cpp | 0 src/Classic/Utilities/SingularMatrixError.h | 0 src/Classic/Utilities/SizeError.cpp | 0 src/Classic/Utilities/SizeError.h | 0 src/Classic/Utilities/SwitcherError.cpp | 0 src/Classic/Utilities/SwitcherError.h | 0 src/Classic/Utilities/Util.cpp | 0 src/Classic/Utilities/Util.h | 0 src/Classic/autogen-gele.sh | 0 src/Classic/autogen-palu.sh | 0 src/Classic/autogen-regression.sh | 0 src/Classic/autogen.sh | 0 src/Classic/configure.ac | 0 src/Copyright.readme | 0 src/Distribution/CMakeLists.txt | 0 src/Distribution/ClosedOrbitFinder.h | 0 src/Distribution/Distribution.cpp | 0 src/Distribution/Distribution.h | 0 src/Distribution/Harmonics.h | 0 src/Distribution/LaserProfile.cpp | 0 src/Distribution/LaserProfile.h | 0 src/Distribution/MagneticField.cpp | 0 src/Distribution/MagneticField.h | 0 src/Distribution/MapGenerator.h | 0 src/Distribution/SigmaGenerator.h | 0 src/Distribution/halton1d_sequence.cpp | 0 src/Distribution/halton1d_sequence.hh | 0 src/Distribution/matrix_vector_operation.h | 0 src/Distribution/rdm.h | 0 src/Editor/CMakeLists.txt | 0 src/Editor/Edit.cpp | 0 src/Editor/Edit.h | 0 src/Editor/EditCmd.cpp | 0 src/Editor/EditCmd.h | 0 src/Editor/EditCycle.cpp | 0 src/Editor/EditCycle.h | 0 src/Editor/EditEnd.cpp | 0 src/Editor/EditEnd.h | 0 src/Editor/EditFlatten.cpp | 0 src/Editor/EditFlatten.h | 0 src/Editor/EditInstall.cpp | 0 src/Editor/EditInstall.h | 0 src/Editor/EditMove.cpp | 0 src/Editor/EditMove.h | 0 src/Editor/EditParser.cpp | 0 src/Editor/EditParser.h | 0 src/Editor/EditReflect.cpp | 0 src/Editor/EditReflect.h | 0 src/Editor/EditRemove.cpp | 0 src/Editor/EditRemove.h | 0 src/Editor/EditReplace.cpp | 0 src/Editor/EditReplace.h | 0 src/Editor/EditSelect.cpp | 0 src/Editor/EditSelect.h | 0 src/Elements/AttCell.cpp | 0 src/Elements/AttCell.h | 0 src/Elements/CMakeLists.txt | 0 src/Elements/OpalBeamBeam.cpp | 0 src/Elements/OpalBeamBeam.h | 0 src/Elements/OpalBeamBeam3D.cpp | 0 src/Elements/OpalBeamBeam3D.h | 0 src/Elements/OpalBeamline.cpp | 0 src/Elements/OpalBeamline.h | 0 src/Elements/OpalBend.cpp | 0 src/Elements/OpalBend.h | 0 src/Elements/OpalCCollimator.cpp | 0 src/Elements/OpalCCollimator.h | 0 src/Elements/OpalCavity.cpp | 0 src/Elements/OpalCavity.h | 0 src/Elements/OpalCyclotron.cpp | 0 src/Elements/OpalCyclotron.h | 0 src/Elements/OpalCyclotronValley.cpp | 0 src/Elements/OpalCyclotronValley.h | 0 src/Elements/OpalDegrader.cpp | 0 src/Elements/OpalDegrader.h | 0 src/Elements/OpalDrift.cpp | 0 src/Elements/OpalDrift.h | 0 src/Elements/OpalECollimator.cpp | 0 src/Elements/OpalECollimator.h | 0 src/Elements/OpalElement.cpp | 0 src/Elements/OpalElement.h | 0 src/Elements/OpalHKicker.cpp | 0 src/Elements/OpalHKicker.h | 0 src/Elements/OpalHMonitor.cpp | 0 src/Elements/OpalHMonitor.h | 0 src/Elements/OpalInstrument.cpp | 0 src/Elements/OpalInstrument.h | 0 src/Elements/OpalKicker.cpp | 0 src/Elements/OpalKicker.h | 0 src/Elements/OpalMarker.cpp | 0 src/Elements/OpalMarker.h | 0 src/Elements/OpalMonitor.cpp | 0 src/Elements/OpalMonitor.h | 0 src/Elements/OpalMultipole.cpp | 0 src/Elements/OpalMultipole.h | 0 src/Elements/OpalMultipoleT.cpp | 0 src/Elements/OpalMultipoleT.h | 0 src/Elements/OpalOctupole.cpp | 0 src/Elements/OpalOctupole.h | 0 .../OpalOffset/OpalGlobalCartesianOffset.cpp | 0 .../OpalOffset/OpalGlobalCartesianOffset.h | 0 .../OpalGlobalCylindricalOffset.cpp | 0 .../OpalOffset/OpalGlobalCylindricalOffset.h | 0 .../OpalOffset/OpalLocalCartesianOffset.cpp | 0 .../OpalOffset/OpalLocalCartesianOffset.h | 0 .../OpalOffset/OpalLocalCylindricalOffset.cpp | 0 .../OpalOffset/OpalLocalCylindricalOffset.h | 0 src/Elements/OpalParallelPlate.cpp | 0 src/Elements/OpalParallelPlate.h | 0 src/Elements/OpalPatch.cpp | 0 src/Elements/OpalPatch.h | 0 src/Elements/OpalPepperPot.cpp | 0 src/Elements/OpalPepperPot.h | 0 src/Elements/OpalPolynomialTimeDependence.cpp | 0 src/Elements/OpalPolynomialTimeDependence.h | 0 src/Elements/OpalProbe.cpp | 0 src/Elements/OpalProbe.h | 0 src/Elements/OpalQuadrupole.cpp | 0 src/Elements/OpalQuadrupole.h | 0 src/Elements/OpalRBend.cpp | 0 src/Elements/OpalRBend.h | 0 src/Elements/OpalRBend3D.cpp | 0 src/Elements/OpalRBend3D.h | 0 src/Elements/OpalRCollimator.cpp | 0 src/Elements/OpalRCollimator.h | 0 src/Elements/OpalRingDefinition.cpp | 0 src/Elements/OpalRingDefinition.h | 0 src/Elements/OpalSBend.cpp | 0 src/Elements/OpalSBend.h | 0 src/Elements/OpalSBend3D.cpp | 0 src/Elements/OpalSBend3D.h | 0 src/Elements/OpalSRot.cpp | 0 src/Elements/OpalSRot.h | 0 src/Elements/OpalScalingFFAGMagnet.cpp | 0 src/Elements/OpalScalingFFAGMagnet.h | 0 src/Elements/OpalSeparator.cpp | 0 src/Elements/OpalSeparator.h | 0 src/Elements/OpalSeptum.cpp | 0 src/Elements/OpalSeptum.h | 0 src/Elements/OpalSextupole.cpp | 0 src/Elements/OpalSextupole.h | 0 src/Elements/OpalSlit.cpp | 0 src/Elements/OpalSlit.h | 0 src/Elements/OpalSolenoid.cpp | 0 src/Elements/OpalSolenoid.h | 0 src/Elements/OpalSource.cpp | 0 src/Elements/OpalSource.h | 0 src/Elements/OpalStripper.cpp | 0 src/Elements/OpalStripper.h | 0 src/Elements/OpalTravelingWave.cpp | 0 src/Elements/OpalTravelingWave.h | 0 src/Elements/OpalVKicker.cpp | 0 src/Elements/OpalVKicker.h | 0 src/Elements/OpalVMonitor.cpp | 0 src/Elements/OpalVMonitor.h | 0 src/Elements/OpalVariableRFCavity.cpp | 0 src/Elements/OpalVariableRFCavity.h | 0 src/Elements/OpalWire.cpp | 0 src/Elements/OpalWire.h | 0 src/Elements/OpalYRot.cpp | 0 src/Elements/OpalYRot.h | 0 src/Errors/AlignBase.cpp | 0 src/Errors/AlignBase.h | 0 src/Errors/AlignHandler.cpp | 0 src/Errors/AlignHandler.h | 0 src/Errors/AlignReader.cpp | 0 src/Errors/AlignReader.h | 0 src/Errors/AlignRemover.cpp | 0 src/Errors/AlignRemover.h | 0 src/Errors/AlignWriter.cpp | 0 src/Errors/AlignWriter.h | 0 src/Errors/CMakeLists.txt | 0 src/Errors/Error.cpp | 0 src/Errors/Error.h | 0 src/Errors/ErrorAlign.cpp | 0 src/Errors/ErrorAlign.h | 0 src/Errors/ErrorCmd.cpp | 0 src/Errors/ErrorCmd.h | 0 src/Errors/ErrorComp.cpp | 0 src/Errors/ErrorComp.h | 0 src/Errors/ErrorEnd.cpp | 0 src/Errors/ErrorEnd.h | 0 src/Errors/ErrorField.cpp | 0 src/Errors/ErrorField.h | 0 src/Errors/ErrorParser.cpp | 0 src/Errors/ErrorParser.h | 0 src/Errors/ErrorPrint.cpp | 0 src/Errors/ErrorPrint.h | 0 src/Errors/ErrorSave.cpp | 0 src/Errors/ErrorSave.h | 0 src/Errors/ErrorSelect.cpp | 0 src/Errors/ErrorSelect.h | 0 src/Errors/MPBase.cpp | 0 src/Errors/MPBase.h | 0 src/Errors/MPHandler.cpp | 0 src/Errors/MPHandler.h | 0 src/Errors/MPReader.cpp | 0 src/Errors/MPReader.h | 0 src/Errors/MPRemover.cpp | 0 src/Errors/MPRemover.h | 0 src/Errors/MPWriter.cpp | 0 src/Errors/MPWriter.h | 0 src/Expressions/AAutomatic.h | 0 src/Expressions/ABinary.h | 0 src/Expressions/AColumn.cpp | 0 src/Expressions/AColumn.h | 0 src/Expressions/ADeferred.h | 0 src/Expressions/AList.h | 0 src/Expressions/ARefAttr.h | 0 src/Expressions/ARefExpr.h | 0 src/Expressions/ARow.cpp | 0 src/Expressions/ARow.h | 0 src/Expressions/ASUnary.h | 0 src/Expressions/ATable.cpp | 0 src/Expressions/ATable.h | 0 src/Expressions/AUnary.h | 0 src/Expressions/AValue.h | 0 src/Expressions/CMakeLists.txt | 0 src/Expressions/Expressions.cpp | 0 src/Expressions/Expressions.h | 0 src/Expressions/Indexer.h | 0 src/Expressions/SAutomatic.h | 0 src/Expressions/SBinary.h | 0 src/Expressions/SCell.cpp | 0 src/Expressions/SCell.h | 0 src/Expressions/SConstant.h | 0 src/Expressions/SDeferred.h | 0 src/Expressions/SFunction.cpp | 0 src/Expressions/SFunction.h | 0 src/Expressions/SHash.cpp | 0 src/Expressions/SHash.h | 0 src/Expressions/SNull.h | 0 src/Expressions/SRefAttr.h | 0 src/Expressions/SRefExpr.h | 0 src/Expressions/SUnary.h | 0 src/Expressions/SValue.h | 0 src/Expressions/TFind.h | 0 src/Expressions/TFunction0.h | 0 src/Expressions/TFunction1.h | 0 src/Expressions/TFunction2.h | 0 src/Lines/CMakeLists.txt | 0 src/Lines/FlatWriter.cpp | 0 src/Lines/FlatWriter.h | 0 src/Lines/Line.cpp | 0 src/Lines/Line.h | 0 src/Lines/LineTemplate.cpp | 0 src/Lines/LineTemplate.h | 0 src/Lines/Replacer.cpp | 0 src/Lines/Replacer.h | 0 src/Lines/Sequence.cpp | 0 src/Lines/Sequence.h | 0 src/Lines/SequenceMember.cpp | 0 src/Lines/SequenceMember.h | 0 src/Lines/SequenceParser.cpp | 0 src/Lines/SequenceParser.h | 0 src/Lines/SequenceTemplate.cpp | 0 src/Lines/SequenceTemplate.h | 0 src/Main.cpp | 0 src/Match/AbstractFun.cpp | 0 src/Match/AbstractFun.h | 0 src/Match/AbstractVar.cpp | 0 src/Match/AbstractVar.h | 0 src/Match/CMakeLists.txt | 0 src/Match/ConcreteFun.cpp | 0 src/Match/ConcreteFun.h | 0 src/Match/ConcreteVar.cpp | 0 src/Match/ConcreteVar.h | 0 src/Match/ConstraintCmd.cpp | 0 src/Match/ConstraintCmd.h | 0 src/Match/LMDif.cpp | 0 src/Match/LMDif.h | 0 src/Match/Match.cpp | 0 src/Match/Match.h | 0 src/Match/MatchCmd.cpp | 0 src/Match/MatchCmd.h | 0 src/Match/MatchEnd.cpp | 0 src/Match/MatchEnd.h | 0 src/Match/MatchLimits.h | 0 src/Match/MatchOption.cpp | 0 src/Match/MatchOption.h | 0 src/Match/MatchParser.cpp | 0 src/Match/MatchParser.h | 0 src/Match/MatchState.h | 0 src/Match/Migrad.cpp | 0 src/Match/Migrad.h | 0 src/Match/Simplex.cpp | 0 src/Match/Simplex.h | 0 src/Match/VaryCmd.cpp | 0 src/Match/VaryCmd.h | 0 src/OpalConfigure/CMakeLists.txt | 0 src/OpalConfigure/Configure.cpp | 0 src/OpalConfigure/Configure.h | 0 src/OpalParser/CMakeLists.txt | 0 src/OpalParser/CompoundStatement.cpp | 0 src/OpalParser/CompoundStatement.h | 0 src/OpalParser/IfStatement.cpp | 0 src/OpalParser/IfStatement.h | 0 src/OpalParser/Macro.cpp | 0 src/OpalParser/Macro.h | 0 src/OpalParser/MacroCmd.cpp | 0 src/OpalParser/MacroCmd.h | 0 src/OpalParser/MacroStream.cpp | 0 src/OpalParser/MacroStream.h | 0 src/OpalParser/OpalParser.cpp | 0 src/OpalParser/OpalParser.h | 0 src/OpalParser/WhileStatement.cpp | 0 src/OpalParser/WhileStatement.h | 0 src/Optimize/CMakeLists.txt | 0 src/Optimize/Constraint.cpp | 0 src/Optimize/Constraint.h | 0 src/Optimize/DVar.cpp | 0 src/Optimize/DVar.h | 0 src/Optimize/Objective.cpp | 0 src/Optimize/Objective.h | 0 src/Optimize/OpalSimulation.cpp | 0 src/Optimize/OpalSimulation.h | 0 src/Optimize/OptimizeCmd.cpp | 0 src/Optimize/OptimizeCmd.h | 0 src/PhysicsActions/CMakeLists.txt | 0 src/PhysicsActions/Dynamic.cpp | 0 src/PhysicsActions/Dynamic.h | 0 src/PhysicsActions/MakeSequence.cpp | 0 src/PhysicsActions/MakeSequence.h | 0 src/PhysicsActions/SetIntegrator.cpp | 0 src/PhysicsActions/SetIntegrator.h | 0 src/PhysicsActions/Static.cpp | 0 src/PhysicsActions/Static.h | 0 src/Solvers/AMR_MG/Amesos2BottomSolver.h | 0 src/Solvers/AMR_MG/Amesos2BottomSolver.hpp | 0 src/Solvers/AMR_MG/AmrBoundary.h | 0 src/Solvers/AMR_MG/AmrDirichletBoundary.h | 0 src/Solvers/AMR_MG/AmrInterpolater.h | 0 src/Solvers/AMR_MG/AmrLagrangeInterpolater.h | 0 .../AMR_MG/AmrLagrangeInterpolater.hpp | 0 src/Solvers/AMR_MG/AmrMultiGrid.cpp | 0 src/Solvers/AMR_MG/AmrMultiGrid.h | 0 src/Solvers/AMR_MG/AmrMultiGridCore.h | 0 src/Solvers/AMR_MG/AmrMultiGridDefs.h | 0 src/Solvers/AMR_MG/AmrMultiGridLevel.h | 0 src/Solvers/AMR_MG/AmrMultiGridLevel.hpp | 0 src/Solvers/AMR_MG/AmrOpenBoundary.h | 0 src/Solvers/AMR_MG/AmrPCInterpolater.h | 0 src/Solvers/AMR_MG/AmrPCInterpolater.hpp | 0 src/Solvers/AMR_MG/AmrPeriodicBoundary.h | 0 src/Solvers/AMR_MG/AmrPreconditioner.h | 0 src/Solvers/AMR_MG/AmrSmoother.cpp | 0 src/Solvers/AMR_MG/AmrSmoother.h | 0 src/Solvers/AMR_MG/AmrTrilinearInterpolater.h | 0 .../AMR_MG/AmrTrilinearInterpolater.hpp | 0 src/Solvers/AMR_MG/BelosBottomSolver.h | 0 src/Solvers/AMR_MG/BelosBottomSolver.hpp | 0 src/Solvers/AMR_MG/BottomSolver.h | 0 src/Solvers/AMR_MG/CMakeLists.txt | 0 src/Solvers/AMR_MG/Ifpack2Preconditioner.h | 0 src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp | 0 src/Solvers/AMR_MG/MueLuBottomSolver.h | 0 src/Solvers/AMR_MG/MueLuBottomSolver.hpp | 0 src/Solvers/AMR_MG/MueLuPreconditioner.h | 0 src/Solvers/AMR_MG/MueLuPreconditioner.hpp | 0 src/Solvers/AmrPoissonSolver.h | 0 src/Solvers/ArbitraryDomain.cpp | 0 src/Solvers/ArbitraryDomain.h | 0 src/Solvers/BoxCornerDomain.cpp | 0 src/Solvers/BoxCornerDomain.h | 0 .../BoxLibSolvers/FMGPoissonSolver.cpp | 0 src/Solvers/BoxLibSolvers/FMGPoissonSolver.h | 0 src/Solvers/CMakeLists.txt | 0 src/Solvers/EllipticDomain.cpp | 0 src/Solvers/EllipticDomain.h | 0 src/Solvers/FFTBoxPoissonSolver.cpp | 0 src/Solvers/FFTBoxPoissonSolver.h | 0 src/Solvers/FFTPoissonSolver.cpp | 0 src/Solvers/FFTPoissonSolver.h | 0 src/Solvers/IrregularDomain.h | 0 src/Solvers/MGPoissonSolver.cpp | 0 src/Solvers/MGPoissonSolver.h | 0 src/Solvers/P3MPoissonSolver.cpp | 0 src/Solvers/P3MPoissonSolver.h | 0 src/Solvers/PoissonSolver.h | 0 src/Solvers/RectangularDomain.cpp | 0 src/Solvers/RectangularDomain.h | 0 src/Solvers/TaperDomain.cpp | 0 src/Solvers/TaperDomain.h | 0 src/Steppers/BorisPusher.h | 0 src/Steppers/CMakeLists.txt | 0 src/Steppers/LF2.h | 0 src/Steppers/LF2.hpp | 0 src/Steppers/RK4.h | 0 src/Steppers/RK4.hpp | 0 src/Steppers/Stepper.h | 0 src/Steppers/Steppers.h | 0 src/Structure/Beam.cpp | 0 src/Structure/Beam.h | 0 src/Structure/BoundaryGeometry.cpp | 0 src/Structure/BoundaryGeometry.h | 0 src/Structure/CMakeLists.txt | 0 src/Structure/DataSink.cpp | 0 src/Structure/DataSink.h | 0 src/Structure/FieldSolver.cpp | 0 src/Structure/FieldSolver.h | 0 src/Structure/H5PartWrapper.cpp | 0 src/Structure/H5PartWrapper.h | 0 src/Structure/H5PartWrapperForPC.cpp | 0 src/Structure/H5PartWrapperForPC.h | 0 src/Structure/H5PartWrapperForPS.cpp | 0 src/Structure/H5PartWrapperForPS.h | 0 src/Structure/H5PartWrapperForPT.cpp | 0 src/Structure/H5PartWrapperForPT.h | 0 src/Structure/IpplInfoWrapper.cpp | 0 src/Structure/IpplInfoWrapper.h | 0 src/Structure/OpalInputInterpreter.cpp | 0 src/Structure/OpalInputInterpreter.h | 0 src/Structure/OpalWake.cpp | 0 src/Structure/OpalWake.h | 0 src/Structure/ParticleMatterInteraction.cpp | 0 src/Structure/ParticleMatterInteraction.h | 0 src/Structure/PriEmissionPhysics.cpp | 0 src/Structure/PriEmissionPhysics.h | 0 src/Structure/SecondaryEmissionPhysics.cpp | 0 src/Structure/SecondaryEmissionPhysics.h | 0 src/Structure/TracerParticles.cpp | 0 src/Structure/TracerParticles.hpp | 0 src/Tables/AttList.cpp | 0 src/Tables/AttList.h | 0 src/Tables/AttWriter.cpp | 0 src/Tables/AttWriter.h | 0 src/Tables/CMakeLists.txt | 0 src/Tables/CorrectionBase.cpp | 0 src/Tables/CorrectionBase.h | 0 src/Tables/Eigen.cpp | 0 src/Tables/Eigen.h | 0 src/Tables/Envelope.cpp | 0 src/Tables/Envelope.h | 0 src/Tables/Flatten.h | 0 src/Tables/Insertion.cpp | 0 src/Tables/Insertion.h | 0 src/Tables/List.cpp | 0 src/Tables/List.h | 0 src/Tables/MatrixCmd.cpp | 0 src/Tables/MatrixCmd.h | 0 src/Tables/Micado.cpp | 0 src/Tables/Micado.h | 0 src/Tables/Period.cpp | 0 src/Tables/Period.h | 0 src/Tables/RangeSelector.cpp | 0 src/Tables/RangeSelector.h | 0 src/Tables/Selector.cpp | 0 src/Tables/Selector.h | 0 src/Tables/Survey.cpp | 0 src/Tables/Survey.h | 0 src/Tables/TableTester.cpp | 0 src/Tables/TableTester.h | 0 src/Tables/ThreadAll.cpp | 0 src/Tables/ThreadAll.h | 0 src/Tables/ThreadBpm.cpp | 0 src/Tables/ThreadBpm.h | 0 src/Tables/Twiss.cpp | 0 src/Tables/Twiss.h | 0 src/Tables/Twiss3.cpp | 0 src/Tables/Twiss3.h | 0 src/Track/CMakeLists.txt | 0 src/Track/Track.cpp | 0 src/Track/Track.h | 0 src/Track/TrackCmd.cpp | 0 src/Track/TrackCmd.h | 0 src/Track/TrackEnd.cpp | 0 src/Track/TrackEnd.h | 0 src/Track/TrackParser.cpp | 0 src/Track/TrackParser.h | 0 src/Track/TrackRun.cpp | 0 src/Track/TrackRun.h | 0 src/Track/TrackSave.cpp | 0 src/Track/TrackSave.h | 0 src/Track/TrackStart.cpp | 0 src/Track/TrackStart.h | 0 src/Utilities/CMakeLists.txt | 0 src/Utilities/NumToStr.h | 0 src/Utilities/OpalException.cpp | 0 src/Utilities/OpalException.h | 0 src/Utilities/OpalFilter.cpp | 0 src/Utilities/OpalFilter.h | 0 src/Utilities/OpalSection.cpp | 0 src/Utilities/OpalSection.h | 0 src/Utilities/RegularExpression.cpp | 0 src/Utilities/RegularExpression.h | 0 src/Utilities/Round.cpp | 0 src/Utilities/Round.h | 0 src/Utilities/Timer.cpp | 0 src/Utilities/Timer.h | 0 src/Utilities/TpsWerrf.cpp | 0 src/Utilities/TpsWerrf.h | 0 src/Utilities/Truncate.cpp | 0 src/Utilities/Truncate.h | 0 src/ValueDefinitions/BoolConstant.cpp | 0 src/ValueDefinitions/BoolConstant.h | 0 src/ValueDefinitions/CMakeLists.txt | 0 src/ValueDefinitions/RealConstant.cpp | 0 src/ValueDefinitions/RealConstant.h | 0 src/ValueDefinitions/RealVariable.cpp | 0 src/ValueDefinitions/RealVariable.h | 0 src/ValueDefinitions/RealVector.cpp | 0 src/ValueDefinitions/RealVector.h | 0 src/ValueDefinitions/StringConstant.cpp | 0 src/ValueDefinitions/StringConstant.h | 0 src/addToDoxygenMainPage.h | 0 src/changes.cpp | 0 src/changes.h | 0 src/config.h.in | 0 src/opal.cpp | 0 src/opal.h | 0 src/revision.h.in | 0 tests/CMakeLists.txt | 0 tests/Kollimator/Degrader/Degrader-1-RT.o | 0 tests/Kollimator/Degrader/Degrader-1.in | 0 tests/Kollimator/Degrader/Degrader-1.rt | 0 tests/Kollimator/Degrader/Degrader-1.sge | 0 .../Degrader/reference/Degrader-1.lbal | 0 .../Degrader/reference/Degrader-1.lbal.md5 | 0 .../Degrader/reference/Degrader-1.out | 0 .../Degrader/reference/Degrader-1.out.md5 | 0 .../Degrader/reference/Degrader-1.stat | 0 .../Degrader/reference/Degrader-1.stat.md5 | 0 tests/Kollimator/collimator.in | 0 tests/Main.cpp | 0 .../PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in | 0 tests/classic_src/AbsBeamline/CMakeLists.txt | 0 .../AbsBeamline/DipoleFieldTest.cpp | 0 .../AbsBeamline/MultipoleTTest.cpp | 0 tests/classic_src/AbsBeamline/OffsetTest.cpp | 0 tests/classic_src/AbsBeamline/RingTest.cpp | 0 tests/classic_src/AbsBeamline/SBend3DTest.cpp | 0 .../classic_src/AbsBeamline/SBend3D_map.field | 0 .../AbsBeamline/ScalingFFAGMagnetTest.cpp | 0 .../AbsBeamline/VariableRFCavityTest.cpp | 0 tests/classic_src/Algorithms/CMakeLists.txt | 0 .../PolynomialTimeDependenceTest.cpp | 0 tests/classic_src/CMakeLists.txt | 0 tests/classic_src/Fields/CMakeLists.txt | 0 .../Fields/Interpolation/CMakeLists.txt | 0 .../Fields/Interpolation/NDGridTest.cpp | 0 .../Interpolation/PPSolveFactoryTest.cpp | 0 .../Interpolation/PolynomialPatchTest.cpp | 0 .../Fields/Interpolation/SolveFactoryTest.cpp | 0 .../SquarePolynomialVectorTest.cpp | 0 .../Fields/Interpolation/ThreeDGridTest.cpp | 0 tests/classic_src/Utilities/CMakeLists.txt | 0 .../classic_src/Utilities/RingSectionTest.cpp | 0 tests/ippl_src/CMakeLists.txt | 0 tests/ippl_src/Particle/CMakeLists.txt | 0 tests/ippl_src/Particle/EdgeCentering.cpp | 0 .../StatisticalErrors/CMakeLists.txt | 0 .../Algorithms/StatisticalErrors/Test1.cpp | 0 .../Algorithms/StatisticalErrors/Test1.h | 0 tests/opal_src/BasicActions/CMakeLists.txt | 0 .../BasicActions/DumpEMFieldsTest.cpp | 0 .../opal_src/BasicActions/DumpFieldsTest.cpp | 0 tests/opal_src/CMakeLists.txt | 0 tests/opal_src/Distribution/BinomialTest.cpp | 0 tests/opal_src/Distribution/CMakeLists.txt | 0 tests/opal_src/Distribution/GaussTest.cpp | 0 tests/opal_src/Elements/CMakeLists.txt | 0 tests/opal_src/Elements/OpalOffsetTest.cpp | 0 .../OpalPolynomialTimeDependenceTest.cpp | 0 .../Elements/OpalVariableRFCavityTest.cpp | 0 tests/opal_src/Utilities/CMakeLists.txt | 0 tests/opal_src/Utilities/MockComponent.h | 0 tests/opal_test_utilities/CMakeLists.txt | 0 tests/opal_test_utilities/SilenceTest.cpp | 0 tests/opal_test_utilities/SilenceTest.h | 0 tests/sc/test-1.in | 0 tests/sc/test-2.in | 0 tests/sc/test-3.in | 0 tools/BandRF/Makefile.def | 0 tools/BandRF/Readme | 0 tools/BandRF/ascii2h5block_asgic.cpp | 0 tools/CMakeLists.txt | 0 tools/README | 0 tools/SDDS.patch | 0 tools/SDDSCMakeLists.tar.gz | Bin tools/SDDSReader/CMakeLists.txt | 0 tools/SDDSReader/config.h.in | 0 tools/SDDSReader/main.cpp | 0 tools/emacs/opal.el | 0 tools/opal2sdds/CMakeLists.txt | 0 tools/opal2sdds/config.h.in | 0 tools/opal2sdds/main.cpp | 0 tools/sdds2opal/CMakeLists.txt | 0 tools/sdds2opal/config.h.in | 0 tools/sdds2opal/main.cpp | 0 2778 files changed, 56 insertions(+), 9 deletions(-) mode change 100755 => 100644 .gitattributes mode change 100755 => 100644 .gitignore mode change 100755 => 100644 CMakeLists.txt mode change 100755 => 100644 CMakeModules/FindGSL.cmake mode change 100755 => 100644 CMakeModules/FindGTest.cmake mode change 100755 => 100644 CMakeModules/FindH5Hut.cmake mode change 100755 => 100644 CMakeModules/FindHDF5.cmake mode change 100755 => 100644 CMakeModules/FindSDDS.cmake mode change 100755 => 100644 Doxyfile mode change 100755 => 100644 README.md mode change 100755 => 100644 cmake/OPALConfig.cmake.in mode change 100755 => 100644 doc/randomnotes.txt mode change 100755 => 100644 doc/refcard/opal-ref-card-bibliography.bib mode change 100755 => 100644 doc/refcard/opal-refcard.tex mode change 100755 => 100644 ippl/CMakeLists.txt mode change 100755 => 100644 ippl/Doxyfile mode change 100755 => 100644 ippl/INSTALL mode change 100755 => 100644 ippl/LICENSE mode change 100755 => 100644 ippl/README mode change 100755 => 100644 ippl/cmake/IPPLConfig.cmake.in mode change 100755 => 100644 ippl/doc/tex/dingbat.sty mode change 100755 => 100644 ippl/doc/tex/error_time.pdf mode change 100755 => 100644 ippl/doc/tex/figures/psi_logo_wide.eps mode change 100755 => 100644 ippl/doc/tex/figures/psi_logo_wide.pdf mode change 100755 => 100644 ippl/doc/tex/greens.pdf mode change 100755 => 100644 ippl/doc/tex/greens.ps mode change 100755 => 100644 ippl/doc/tex/html.sty mode change 100755 => 100644 ippl/doc/tex/introduction.tex mode change 100755 => 100644 ippl/doc/tex/ippl_centering_ref.tex mode change 100755 => 100644 ippl/doc/tex/ippl_fft.tex mode change 100755 => 100644 ippl/doc/tex/ippl_field_ref.tex mode change 100755 => 100644 ippl/doc/tex/ippl_fieldlayout_ref.tex mode change 100755 => 100644 ippl/doc/tex/ippl_fields.tex mode change 100755 => 100644 ippl/doc/tex/ippl_index_ref.tex mode change 100755 => 100644 ippl/doc/tex/ippl_mesh_ref.tex mode change 100755 => 100644 ippl/doc/tex/ippl_particles.tex mode change 100755 => 100644 ippl/doc/tex/ippl_setup.tex mode change 100755 => 100644 ippl/doc/tex/ippl_user_guide.tex mode change 100755 => 100644 ippl/doc/tex/pdfdraftcopy.sty mode change 100755 => 100644 ippl/src/.gitignore mode change 100755 => 100644 ippl/src/AmrParticle/AmrParticleBase.h mode change 100755 => 100644 ippl/src/AmrParticle/AmrParticleBase.hpp mode change 100755 => 100644 ippl/src/AmrParticle/AmrParticleLevelCounter.h mode change 100755 => 100644 ippl/src/AmrParticle/CMakeLists.txt mode change 100755 => 100644 ippl/src/AmrParticle/ParticleAmrLayout.h mode change 100755 => 100644 ippl/src/AppTypes/AntiSymTenzor.h mode change 100755 => 100644 ippl/src/AppTypes/AppTypeTraits.h mode change 100755 => 100644 ippl/src/AppTypes/CMakeLists.txt mode change 100755 => 100644 ippl/src/AppTypes/GenVektor.h mode change 100755 => 100644 ippl/src/AppTypes/SymTenzor.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMeta.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaAssign.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaBinary.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaCompare.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaCross.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaDot.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaDotDot.h mode change 100755 => 100644 ippl/src/AppTypes/TSVMetaUnary.h mode change 100755 => 100644 ippl/src/AppTypes/Tenzor.h mode change 100755 => 100644 ippl/src/AppTypes/Vektor.h mode change 100755 => 100644 ippl/src/AppTypes/dcomplex.h mode change 100755 => 100644 ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/SymTenzor_1D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/SymTenzor_2D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/SymTenzor_3D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/Tenzor_1D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/Tenzor_2D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/Tenzor_3D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/Vektor_1D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/Vektor_2D.cpp mode change 100755 => 100644 ippl/src/AppTypes/inst/Vektor_3D.cpp mode change 100755 => 100644 ippl/src/CMakeLists.txt mode change 100755 => 100644 ippl/src/DataSource/CMakeLists.txt mode change 100755 => 100644 ippl/src/DataSource/DataConnect.cpp mode change 100755 => 100644 ippl/src/DataSource/DataConnect.h mode change 100755 => 100644 ippl/src/DataSource/DataConnectCreator.cpp mode change 100755 => 100644 ippl/src/DataSource/DataConnectCreator.h mode change 100755 => 100644 ippl/src/DataSource/DataSource.cpp mode change 100755 => 100644 ippl/src/DataSource/DataSource.h mode change 100755 => 100644 ippl/src/DataSource/DataSourceObject.h mode change 100755 => 100644 ippl/src/DataSource/FieldDataSource.h mode change 100755 => 100644 ippl/src/DataSource/FieldDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/FileDataConnect.h mode change 100755 => 100644 ippl/src/DataSource/FileFieldDataSource.h mode change 100755 => 100644 ippl/src/DataSource/FileFieldDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/FilePtclAttribDataSource.h mode change 100755 => 100644 ippl/src/DataSource/FilePtclAttribDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/FilePtclBaseDataSource.h mode change 100755 => 100644 ippl/src/DataSource/FilePtclBaseDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/MakeDataSource.h mode change 100755 => 100644 ippl/src/DataSource/MakeDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/PtclAttribDataSource.cpp mode change 100755 => 100644 ippl/src/DataSource/PtclAttribDataSource.h mode change 100755 => 100644 ippl/src/DataSource/PtclBaseDataSource.cpp mode change 100755 => 100644 ippl/src/DataSource/PtclBaseDataSource.h mode change 100755 => 100644 ippl/src/DataSource/ScalarDataSource.h mode change 100755 => 100644 ippl/src/DataSource/ScalarDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/StringDataSource.h mode change 100755 => 100644 ippl/src/DataSource/StringDataSource.hpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribAppTypesDS_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribAppTypesDS_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribAppTypesDS_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParAttribDS_all.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_3D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseUniformDS_1D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseUniformDS_2D.cpp mode change 100755 => 100644 ippl/src/DataSource/inst/FileParBaseUniformDS_3D.cpp mode change 100755 => 100644 ippl/src/DomainMap/CMakeLists.txt mode change 100755 => 100644 ippl/src/DomainMap/DomainMap.h mode change 100755 => 100644 ippl/src/DomainMap/DomainMap.hpp mode change 100755 => 100644 ippl/src/FFT/CMakeLists.txt mode change 100755 => 100644 ippl/src/FFT/FFT.h mode change 100755 => 100644 ippl/src/FFT/FFT.hpp mode change 100755 => 100644 ippl/src/FFT/FFTBase.h mode change 100755 => 100644 ippl/src/FFT/FFTBase.hpp mode change 100755 => 100644 ippl/src/FFT/SCSL_FFT.F mode change 100755 => 100644 ippl/src/FFT/SCSL_FFT.h mode change 100755 => 100644 ippl/src/FFT/c_utils.c mode change 100755 => 100644 ippl/src/FFT/c_utils.h mode change 100755 => 100644 ippl/src/FFT/f2c.h mode change 100755 => 100644 ippl/src/FFT/fftpack.F mode change 100755 => 100644 ippl/src/FFT/fftpack.cpp mode change 100755 => 100644 ippl/src/FFT/fftpack.h mode change 100755 => 100644 ippl/src/FFT/fftpack_FFT.h mode change 100755 => 100644 ippl/src/FFT/fftpack_inc.c mode change 100755 => 100644 ippl/src/Field/Assign.h mode change 100755 => 100644 ippl/src/Field/Assign.hpp mode change 100755 => 100644 ippl/src/Field/AssignDefs.h mode change 100755 => 100644 ippl/src/Field/AssignGeneralBF.hpp mode change 100755 => 100644 ippl/src/Field/AssignGeneralIBF.hpp mode change 100755 => 100644 ippl/src/Field/AssignTags.h mode change 100755 => 100644 ippl/src/Field/BCond.h mode change 100755 => 100644 ippl/src/Field/BCond.hpp mode change 100755 => 100644 ippl/src/Field/BareField.h mode change 100755 => 100644 ippl/src/Field/BareField.hpp mode change 100755 => 100644 ippl/src/Field/BareFieldIterator.h mode change 100755 => 100644 ippl/src/Field/BrickExpression.h mode change 100755 => 100644 ippl/src/Field/BrickExpression.hpp mode change 100755 => 100644 ippl/src/Field/BrickIterator.h mode change 100755 => 100644 ippl/src/Field/BrickIterator.hpp mode change 100755 => 100644 ippl/src/Field/CMakeLists.txt mode change 100755 => 100644 ippl/src/Field/CompressedBrickIterator.h mode change 100755 => 100644 ippl/src/Field/CompressedBrickIterator.hpp mode change 100755 => 100644 ippl/src/Field/Field.h mode change 100755 => 100644 ippl/src/Field/Field.hpp mode change 100755 => 100644 ippl/src/Field/FieldLoc.h mode change 100755 => 100644 ippl/src/Field/FieldSpec.h mode change 100755 => 100644 ippl/src/Field/GuardCellSizes.h mode change 100755 => 100644 ippl/src/Field/GuardCellSizes.hpp mode change 100755 => 100644 ippl/src/Field/IndexedBareField.h mode change 100755 => 100644 ippl/src/Field/IndexedBareField.hpp mode change 100755 => 100644 ippl/src/Field/IndexedField.h mode change 100755 => 100644 ippl/src/Field/LField.h mode change 100755 => 100644 ippl/src/Field/LField.hpp mode change 100755 => 100644 ippl/src/Field/ReductionLoc.h mode change 100755 => 100644 ippl/src/Field/ReductionLoc.hpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCondAppTypes_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareFieldAppTypes_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareFieldAppTypes_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareFieldAppTypes_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_cmplx_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_cmplx_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_cmplx_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_fp_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_fp_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_fp_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_int_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_int_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/BareField_int_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/FieldAppTypes_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_cmplx_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/Field_int_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/GuardCellSizes_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/GuardCellSizes_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/GuardCellSizes_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/LFieldAppTypes_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/LFieldAppTypes_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/LFieldAppTypes_3D.cpp mode change 100755 => 100644 ippl/src/Field/inst/LField_1D.cpp mode change 100755 => 100644 ippl/src/Field/inst/LField_2D.cpp mode change 100755 => 100644 ippl/src/Field/inst/LField_3D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/BinaryBalancer.h mode change 100755 => 100644 ippl/src/FieldLayout/BinaryBalancer.hpp mode change 100755 => 100644 ippl/src/FieldLayout/CMakeLists.txt mode change 100755 => 100644 ippl/src/FieldLayout/CenteredFieldLayout.h mode change 100755 => 100644 ippl/src/FieldLayout/CenteredFieldLayout.hpp mode change 100755 => 100644 ippl/src/FieldLayout/ConejoBalancer.h mode change 100755 => 100644 ippl/src/FieldLayout/ConejoBalancer.hpp mode change 100755 => 100644 ippl/src/FieldLayout/ConejoBalancer_inst.cpp mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayout.h mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayout.hpp mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayoutUser.cpp mode change 100755 => 100644 ippl/src/FieldLayout/FieldLayoutUser.h mode change 100755 => 100644 ippl/src/FieldLayout/MultiBalancer.cpp mode change 100755 => 100644 ippl/src/FieldLayout/MultiBalancer.h mode change 100755 => 100644 ippl/src/FieldLayout/MultiBalancer.t.cpp mode change 100755 => 100644 ippl/src/FieldLayout/VRB.cpp mode change 100755 => 100644 ippl/src/FieldLayout/VRB.h mode change 100755 => 100644 ippl/src/FieldLayout/Vnode.h mode change 100755 => 100644 ippl/src/FieldLayout/VnodeMultiBalancer.h mode change 100755 => 100644 ippl/src/FieldLayout/VnodeMultiBalancer.hpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_1D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_2D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_3D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_1D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_2D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_3D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_1D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_2D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_3D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_1D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_2D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_3D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/FieldLayout_1D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/FieldLayout_2D.cpp mode change 100755 => 100644 ippl/src/FieldLayout/inst/FieldLayout_3D.cpp mode change 100755 => 100644 ippl/src/Index/CMakeLists.txt mode change 100755 => 100644 ippl/src/Index/Index.cpp mode change 100755 => 100644 ippl/src/Index/Index.h mode change 100755 => 100644 ippl/src/Index/IndexInlines.h mode change 100755 => 100644 ippl/src/Index/IndexedSIndex.h mode change 100755 => 100644 ippl/src/Index/LSIndex.h mode change 100755 => 100644 ippl/src/Index/NDIndex.h mode change 100755 => 100644 ippl/src/Index/NDIndexInlines.h mode change 100755 => 100644 ippl/src/Index/SIndex.h mode change 100755 => 100644 ippl/src/Index/SIndex.hpp mode change 100755 => 100644 ippl/src/Index/SIndexAssign.h mode change 100755 => 100644 ippl/src/Index/SIndexAssign.hpp mode change 100755 => 100644 ippl/src/Index/SOffset.h mode change 100755 => 100644 ippl/src/Index/inst/LSIndex_1D.cpp mode change 100755 => 100644 ippl/src/Index/inst/LSIndex_2D.cpp mode change 100755 => 100644 ippl/src/Index/inst/LSIndex_3D.cpp mode change 100755 => 100644 ippl/src/Index/inst/NDIndex_1D.cpp mode change 100755 => 100644 ippl/src/Index/inst/NDIndex_2D.cpp mode change 100755 => 100644 ippl/src/Index/inst/NDIndex_3D.cpp mode change 100755 => 100644 ippl/src/Index/inst/SIndex_1D.cpp mode change 100755 => 100644 ippl/src/Index/inst/SIndex_2D.cpp mode change 100755 => 100644 ippl/src/Index/inst/SIndex_3D.cpp mode change 100755 => 100644 ippl/src/Index/inst/SOffset_1D.cpp mode change 100755 => 100644 ippl/src/Index/inst/SOffset_2D.cpp mode change 100755 => 100644 ippl/src/Index/inst/SOffset_3D.cpp mode change 100755 => 100644 ippl/src/Ippl.h mode change 100755 => 100644 ippl/src/IpplVersions.h.in mode change 100755 => 100644 ippl/src/Meshes/CMakeLists.txt mode change 100755 => 100644 ippl/src/Meshes/Cartesian.h mode change 100755 => 100644 ippl/src/Meshes/Cartesian.hpp mode change 100755 => 100644 ippl/src/Meshes/CartesianCentering.h mode change 100755 => 100644 ippl/src/Meshes/CartesianCentering.hpp mode change 100755 => 100644 ippl/src/Meshes/CartesianCentering_inst.cpp mode change 100755 => 100644 ippl/src/Meshes/CartesianStencilSetup.h mode change 100755 => 100644 ippl/src/Meshes/Centering.cpp mode change 100755 => 100644 ippl/src/Meshes/Centering.h mode change 100755 => 100644 ippl/src/Meshes/Mesh.h mode change 100755 => 100644 ippl/src/Meshes/Mesh.hpp mode change 100755 => 100644 ippl/src/Meshes/UniformCartesian.h mode change 100755 => 100644 ippl/src/Meshes/UniformCartesian.hpp mode change 100755 => 100644 ippl/src/Meshes/inst/Cartesian_1D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/Cartesian_2D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/Cartesian_3D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/Mesh_1D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/Mesh_2D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/Mesh_3D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/UniformCartesian_1D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/UniformCartesian_2D.cpp mode change 100755 => 100644 ippl/src/Meshes/inst/UniformCartesian_3D.cpp mode change 100755 => 100644 ippl/src/Message/CMakeLists.txt mode change 100755 => 100644 ippl/src/Message/CRC.cpp mode change 100755 => 100644 ippl/src/Message/CRC.h mode change 100755 => 100644 ippl/src/Message/CommCreator.cpp mode change 100755 => 100644 ippl/src/Message/CommCreator.h mode change 100755 => 100644 ippl/src/Message/CommMPI.cpp mode change 100755 => 100644 ippl/src/Message/CommMPI.h mode change 100755 => 100644 ippl/src/Message/CommPM.cpp mode change 100755 => 100644 ippl/src/Message/CommPM.h mode change 100755 => 100644 ippl/src/Message/CommSHMEMPI.cpp mode change 100755 => 100644 ippl/src/Message/CommSHMEMPI.h mode change 100755 => 100644 ippl/src/Message/Communicate.cpp mode change 100755 => 100644 ippl/src/Message/Communicate.h mode change 100755 => 100644 ippl/src/Message/DataTypes.h mode change 100755 => 100644 ippl/src/Message/Formatter.cpp mode change 100755 => 100644 ippl/src/Message/Formatter.h mode change 100755 => 100644 ippl/src/Message/GlobalComm.h mode change 100755 => 100644 ippl/src/Message/GlobalComm.hpp mode change 100755 => 100644 ippl/src/Message/Message.h mode change 100755 => 100644 ippl/src/Message/Message.hpp mode change 100755 => 100644 ippl/src/Message/MessageFunctions.cpp mode change 100755 => 100644 ippl/src/Message/Operations.h mode change 100755 => 100644 ippl/src/Message/TagMaker.h mode change 100755 => 100644 ippl/src/Message/Tags.h mode change 100755 => 100644 ippl/src/PETE/CMakeLists.txt mode change 100755 => 100644 ippl/src/PETE/IpplExpressions.h mode change 100755 => 100644 ippl/src/PETE/IpplTypeComputations.h mode change 100755 => 100644 ippl/src/PETE/PETE.h mode change 100755 => 100644 ippl/src/PETE/TypeComputations.h mode change 100755 => 100644 ippl/src/Particle/AbstractParticle.h mode change 100755 => 100644 ippl/src/Particle/BoxParticleCachingPolicy.h mode change 100755 => 100644 ippl/src/Particle/CMakeLists.txt mode change 100755 => 100644 ippl/src/Particle/CellParticleCachingPolicy.h mode change 100755 => 100644 ippl/src/Particle/GenArrayParticle.h mode change 100755 => 100644 ippl/src/Particle/GenParticle.h mode change 100755 => 100644 ippl/src/Particle/IntCIC.h mode change 100755 => 100644 ippl/src/Particle/IntNGP.h mode change 100755 => 100644 ippl/src/Particle/IntSUDS.h mode change 100755 => 100644 ippl/src/Particle/IntTSC.h mode change 100755 => 100644 ippl/src/Particle/Interpolator.h mode change 100755 => 100644 ippl/src/Particle/IpplParticleBase.h mode change 100755 => 100644 ippl/src/Particle/IpplParticleBase.hpp mode change 100755 => 100644 ippl/src/Particle/NoParticleCachingPolicy.h mode change 100755 => 100644 ippl/src/Particle/PAssign.h mode change 100755 => 100644 ippl/src/Particle/PAssign.hpp mode change 100755 => 100644 ippl/src/Particle/PAssignDefs.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/BasicPairBuilder.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/CMakeLists.txt mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilder.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilderPeriodic.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel_globCHaining.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/PairConditions.h mode change 100755 => 100644 ippl/src/Particle/PairBuilder/SortingPairBuilder.h mode change 100755 => 100644 ippl/src/Particle/ParticleAttrib.h mode change 100755 => 100644 ippl/src/Particle/ParticleAttrib.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleAttribBase.h mode change 100755 => 100644 ippl/src/Particle/ParticleAttribElem.h mode change 100755 => 100644 ippl/src/Particle/ParticleBConds.h mode change 100755 => 100644 ippl/src/Particle/ParticleBalancer.h mode change 100755 => 100644 ippl/src/Particle/ParticleBalancer.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleCashedLayout.h mode change 100755 => 100644 ippl/src/Particle/ParticleCashedLayout.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleInteractAttrib.h mode change 100755 => 100644 ippl/src/Particle/ParticleInteractAttrib.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleInteractLayout.h mode change 100755 => 100644 ippl/src/Particle/ParticleInteractLayout.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleLayout.h mode change 100755 => 100644 ippl/src/Particle/ParticleLayout.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleLayoutFromGrid.cpp mode change 100755 => 100644 ippl/src/Particle/ParticleLayoutFromGrid.h mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.cppNudge mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.h mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.hNudge mode change 100755 => 100644 ippl/src/Particle/ParticleSpatialLayout.hpp mode change 100755 => 100644 ippl/src/Particle/ParticleUniformLayout.h mode change 100755 => 100644 ippl/src/Particle/ParticleUniformLayout.hpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttribAppTypes_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttribAppTypes_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttribAppTypes_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleAttrib_all.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBConds_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBConds_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBConds_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Cart_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Cart_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Cart_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Unif_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Unif_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseInteract_Unif_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Cart_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Cart_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Cart_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Unif_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Unif_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseSpatial_Unif_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseUniform_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseUniform_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleBaseUniform_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Cart_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Cart_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Cart_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Unif_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Unif_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleCashedLayout_Unif_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttribAppTypes_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttribAppTypes_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttribAppTypes_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractAttrib_all.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Cart_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Cart_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Cart_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Unif_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Unif_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleInteractLayout_Unif_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleLayout_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleLayout_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleLayout_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Cart_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Cart_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Cart_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Unif_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Unif_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleSpatialLayout_Unif_3D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleUniformLayout_1D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleUniformLayout_2D.cpp mode change 100755 => 100644 ippl/src/Particle/inst/ParticleUniformLayout_3D.cpp mode change 100755 => 100644 ippl/src/Profile/CMakeLists.txt mode change 100755 => 100644 ippl/src/Profile/Profiler.cpp mode change 100755 => 100644 ippl/src/Profile/Profiler.h mode change 100755 => 100644 ippl/src/ReadMeBuild mode change 100755 => 100644 ippl/src/Region/CMakeLists.txt mode change 100755 => 100644 ippl/src/Region/NDRegion.h mode change 100755 => 100644 ippl/src/Region/PRegion.h mode change 100755 => 100644 ippl/src/Region/RegionLayout.h mode change 100755 => 100644 ippl/src/Region/RegionLayout.hpp mode change 100755 => 100644 ippl/src/Region/Rnode.h mode change 100755 => 100644 ippl/src/Region/inst/NDRegion_1D.cpp mode change 100755 => 100644 ippl/src/Region/inst/NDRegion_2D.cpp mode change 100755 => 100644 ippl/src/Region/inst/NDRegion_3D.cpp mode change 100755 => 100644 ippl/src/Region/inst/PRegion_all.cpp mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Cart_1D.cpp mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Cart_2D.cpp mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Cart_3D.cpp mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Unif_1D.cpp mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Unif_2D.cpp mode change 100755 => 100644 ippl/src/Region/inst/RegionLayout_Unif_3D.cpp mode change 100755 => 100644 ippl/src/SubField/CMakeLists.txt mode change 100755 => 100644 ippl/src/SubField/SubBareField.h mode change 100755 => 100644 ippl/src/SubField/SubBareField.hpp mode change 100755 => 100644 ippl/src/SubField/SubField.h mode change 100755 => 100644 ippl/src/SubField/SubField.hpp mode change 100755 => 100644 ippl/src/SubField/SubFieldAssign.h mode change 100755 => 100644 ippl/src/SubField/SubFieldAssign.hpp mode change 100755 => 100644 ippl/src/SubField/SubFieldAssignDefs.h mode change 100755 => 100644 ippl/src/SubField/SubFieldIter.h mode change 100755 => 100644 ippl/src/SubField/SubFieldTraits.h mode change 100755 => 100644 ippl/src/SubParticle/CMakeLists.txt mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAssign.h mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAssign.hpp mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAssignDefs.h mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAttrib.h mode change 100755 => 100644 ippl/src/SubParticle/SubParticleAttrib.hpp mode change 100755 => 100644 ippl/src/Utility/CMakeLists.txt mode change 100755 => 100644 ippl/src/Utility/DiscBuffer.cpp mode change 100755 => 100644 ippl/src/Utility/DiscBuffer.h mode change 100755 => 100644 ippl/src/Utility/DiscConfig.cpp mode change 100755 => 100644 ippl/src/Utility/DiscConfig.h mode change 100755 => 100644 ippl/src/Utility/DiscField.h mode change 100755 => 100644 ippl/src/Utility/DiscField.hpp mode change 100755 => 100644 ippl/src/Utility/DiscMeta.cpp mode change 100755 => 100644 ippl/src/Utility/DiscMeta.h mode change 100755 => 100644 ippl/src/Utility/DiscParticle.h mode change 100755 => 100644 ippl/src/Utility/DiscParticle.hpp mode change 100755 => 100644 ippl/src/Utility/DiscParticleFunctions.cpp mode change 100755 => 100644 ippl/src/Utility/DiscType.h mode change 100755 => 100644 ippl/src/Utility/FieldBlock.h mode change 100755 => 100644 ippl/src/Utility/FieldBlock.hpp mode change 100755 => 100644 ippl/src/Utility/FieldDebug.h mode change 100755 => 100644 ippl/src/Utility/FieldDebug.hpp mode change 100755 => 100644 ippl/src/Utility/FieldDebugFunctions.cpp mode change 100755 => 100644 ippl/src/Utility/FieldDebugFunctions.h mode change 100755 => 100644 ippl/src/Utility/FieldDebugPrint.h mode change 100755 => 100644 ippl/src/Utility/FieldDebugPrint.hpp mode change 100755 => 100644 ippl/src/Utility/FieldPrint.h mode change 100755 => 100644 ippl/src/Utility/FieldPrint.hpp mode change 100755 => 100644 ippl/src/Utility/FieldView.h mode change 100755 => 100644 ippl/src/Utility/FieldView.hpp mode change 100755 => 100644 ippl/src/Utility/Inform.cpp mode change 100755 => 100644 ippl/src/Utility/Inform.h mode change 100755 => 100644 ippl/src/Utility/IplCounter.h mode change 100755 => 100644 ippl/src/Utility/IpplCounter.cpp mode change 100755 => 100644 ippl/src/Utility/IpplCounter.h mode change 100755 => 100644 ippl/src/Utility/IpplException.h mode change 100755 => 100644 ippl/src/Utility/IpplInfo.cpp mode change 100755 => 100644 ippl/src/Utility/IpplInfo.h mode change 100755 => 100644 ippl/src/Utility/IpplMemoryUsage.cpp mode change 100755 => 100644 ippl/src/Utility/IpplMemoryUsage.h mode change 100755 => 100644 ippl/src/Utility/IpplMessageCounter.cpp mode change 100755 => 100644 ippl/src/Utility/IpplMessageCounter.h mode change 100755 => 100644 ippl/src/Utility/IpplStats.cpp mode change 100755 => 100644 ippl/src/Utility/IpplStats.h mode change 100755 => 100644 ippl/src/Utility/IpplTimings.cpp mode change 100755 => 100644 ippl/src/Utility/IpplTimings.h mode change 100755 => 100644 ippl/src/Utility/NamedObj.h mode change 100755 => 100644 ippl/src/Utility/PAssert.cpp mode change 100755 => 100644 ippl/src/Utility/PAssert.h mode change 100755 => 100644 ippl/src/Utility/ParticleDebug.h mode change 100755 => 100644 ippl/src/Utility/ParticleDebug.hpp mode change 100755 => 100644 ippl/src/Utility/ParticleDebugFunctions.cpp mode change 100755 => 100644 ippl/src/Utility/ParticleDebugFunctions.h mode change 100755 => 100644 ippl/src/Utility/Pool.cpp mode change 100755 => 100644 ippl/src/Utility/Pool.h mode change 100755 => 100644 ippl/src/Utility/Pooled.h mode change 100755 => 100644 ippl/src/Utility/Pooled.hpp mode change 100755 => 100644 ippl/src/Utility/RNGAssignDefs.h mode change 100755 => 100644 ippl/src/Utility/RNGBitReverse.h mode change 100755 => 100644 ippl/src/Utility/RNGLattice.h mode change 100755 => 100644 ippl/src/Utility/RNGRand.h mode change 100755 => 100644 ippl/src/Utility/RNGSimple.cpp mode change 100755 => 100644 ippl/src/Utility/RNGSimple.h mode change 100755 => 100644 ippl/src/Utility/RNGXCI.cpp mode change 100755 => 100644 ippl/src/Utility/RNGXCI.h mode change 100755 => 100644 ippl/src/Utility/RNGXDiv.cpp mode change 100755 => 100644 ippl/src/Utility/RNGXDiv.h mode change 100755 => 100644 ippl/src/Utility/RandomNumberGen.cpp mode change 100755 => 100644 ippl/src/Utility/RandomNumberGen.h mode change 100755 => 100644 ippl/src/Utility/RefBlock.h mode change 100755 => 100644 ippl/src/Utility/RefCounted.h mode change 100755 => 100644 ippl/src/Utility/SequenceGen.h mode change 100755 => 100644 ippl/src/Utility/StaticIpplInfo.cpp mode change 100755 => 100644 ippl/src/Utility/StaticIpplInfo.h mode change 100755 => 100644 ippl/src/Utility/Timer.cpp mode change 100755 => 100644 ippl/src/Utility/Timer.h mode change 100755 => 100644 ippl/src/Utility/Unique.cpp mode change 100755 => 100644 ippl/src/Utility/Unique.h mode change 100755 => 100644 ippl/src/Utility/User.cpp mode change 100755 => 100644 ippl/src/Utility/User.h mode change 100755 => 100644 ippl/src/Utility/UserList.cpp mode change 100755 => 100644 ippl/src/Utility/UserList.h mode change 100755 => 100644 ippl/src/Utility/Vec.h mode change 100755 => 100644 ippl/src/Utility/my_auto_ptr.h mode change 100755 => 100644 ippl/src/Utility/vmap.h mode change 100755 => 100644 ippl/src/Utility/vmap.hpp mode change 100755 => 100644 ippl/src/config.h.in mode change 100755 => 100644 ippl/test/6dtrack/.job mode change 100755 => 100644 ippl/test/6dtrack/CMakeLists.txt mode change 100755 => 100644 ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.cpp mode change 100755 => 100644 ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.hh mode change 100755 => 100644 ippl/test/6dtrack/GTConfigure/GTConfigure.hh mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/GTDistribution.cc mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/GTDistribution.hh mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/hammersley.cpp mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/hammersley.h mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/makeranlib mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/ranlib.cc mode change 100755 => 100644 ippl/test/6dtrack/GTDistribution/ranlib.h mode change 100755 => 100644 ippl/test/6dtrack/GTElements/ACG.cpp mode change 100755 => 100644 ippl/test/6dtrack/GTElements/ACG.h mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Elements.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTElemData.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTGenElement.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTIBS.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTMultipoleMap.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTRFCavityMap.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTRadiation.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/GTRecquadMap.hh mode change 100755 => 100644 ippl/test/6dtrack/GTElements/IBSProcess.cpp mode change 100755 => 100644 ippl/test/6dtrack/GTElements/IBSProcess.h mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Merlin/PhotonSpectrumGen.cpp mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.cpp mode change 100755 => 100644 ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.h mode change 100755 => 100644 ippl/test/6dtrack/Makefile mode change 100755 => 100644 ippl/test/6dtrack/Makefile.def mode change 100755 => 100644 ippl/test/6dtrack/dsmc6d.cpp mode change 100755 => 100644 ippl/test/6dtrack/lat1.dat mode change 100755 => 100644 ippl/test/6dtrack/lat60.dat mode change 100755 => 100644 ippl/test/6dtrack/lat61.dat mode change 100755 => 100644 ippl/test/6dtrack/lat64.dat mode change 100755 => 100644 ippl/test/6dtrack/lat65.dat mode change 100755 => 100644 ippl/test/6dtrack/lat66.dat mode change 100755 => 100644 ippl/test/AMR/AmrDoxyfile mode change 100755 => 100644 ippl/test/AMR/AmrOpal.cpp mode change 100755 => 100644 ippl/test/AMR/AmrOpal.h mode change 100755 => 100644 ippl/test/AMR/AmrOpal_F.h mode change 100755 => 100644 ippl/test/AMR/CMakeLists.txt mode change 100755 => 100644 ippl/test/AMR/Distribution.cpp mode change 100755 => 100644 ippl/test/AMR/Distribution.h mode change 100755 => 100644 ippl/test/AMR/H5Reader.cpp mode change 100755 => 100644 ippl/test/AMR/H5Reader.h mode change 100755 => 100644 ippl/test/AMR/MGTSolver.cpp mode change 100755 => 100644 ippl/test/AMR/MGTSolver.h mode change 100755 => 100644 ippl/test/AMR/README mode change 100755 => 100644 ippl/test/AMR/Solver.cpp mode change 100755 => 100644 ippl/test/AMR/Solver.h mode change 100755 => 100644 ippl/test/AMR/Tagging_nd.f90 mode change 100755 => 100644 ippl/test/AMR/amrex-only/AssignMultiLevelDensity.cpp mode change 100755 => 100644 ippl/test/AMR/amrex-only/CMakeLists.txt mode change 100755 => 100644 ippl/test/AMR/amrex-only/Solver.cpp mode change 100755 => 100644 ippl/test/AMR/amrex-only/Solver.h mode change 100755 => 100644 ippl/test/AMR/amrex-only/inputs mode change 100755 => 100644 ippl/test/AMR/amrex-only/testDeposition.cpp mode change 100755 => 100644 ippl/test/AMR/amrex-only/testDepositionFail.cpp mode change 100755 => 100644 ippl/test/AMR/amrex-only/testGeometry.cpp mode change 100755 => 100644 ippl/test/AMR/amrex-only/testSolverFail.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/AmrPartBunch.h mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/CMakeLists.txt mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PartBunch.h mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PartBunchBase.h mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PoissonProblems.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/PoissonProblems.h mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/error.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/iterative.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testGaussian.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testGridSolve.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testH5Read.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testHdf5.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testMultiBunch.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testOldPerformance.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testOldPlasma.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testPerfectLoadBalancing.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testReal.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testSolver.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testTracker.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testUnifSphere.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testUnifSphereGrid.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/testUniform.cpp mode change 100755 => 100644 ippl/test/AMR/boxlib-amr/toFile.cpp mode change 100755 => 100644 ippl/test/AMR/helper_functions.h mode change 100755 => 100644 ippl/test/AMR/ippl-amr/AmrParticleBase.h mode change 100755 => 100644 ippl/test/AMR/ippl-amr/AmrParticleBase.hpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/CMakeLists.txt mode change 100755 => 100644 ippl/test/AMR/ippl-amr/LevelNumCounter.h mode change 100755 => 100644 ippl/test/AMR/ippl-amr/PartBunchAmr.h mode change 100755 => 100644 ippl/test/AMR/ippl-amr/ParticleAmrLayout.h mode change 100755 => 100644 ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/inputs mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testAmrPartBase.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testCRTP.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testDomainTransformSolve.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testFromH5.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testGaussian.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testInitGuessSolver.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testInitialBox.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testLayout.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testMultipleSources.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testNewTracker.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testPerformance.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testPlasma.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testScatterAMReX.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testTagging.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testUnifBox.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-amr/testUnifSphere.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/AmrPartBunch.h mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/CMakeLists.txt mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/PartBunch.h mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/PartBunchBase.h mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/testAdapterPattern.cpp mode change 100755 => 100644 ippl/test/AMR/ippl-bunch/testCRTP.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/Amesos2BottomSolver.h mode change 100755 => 100644 ippl/test/AMR/trilinos/Amesos2BottomSolver.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrBoundary.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrDirichletBoundary.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrInterpolater.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrLagrangeInterpolater.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrLagrangeInterpolater.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGrid.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGrid.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridCore.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridDefs.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridLevel.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrOpenBoundary.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPCInterpolater.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPCInterpolater.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPeriodicBoundary.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrPreconditioner.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrRedistributor.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrRedistributor.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrSmoother.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrSmoother.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrTrilinearInterpolater.h mode change 100755 => 100644 ippl/test/AMR/trilinos/AmrTrilinearInterpolater.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/BelosBottomSolver.h mode change 100755 => 100644 ippl/test/AMR/trilinos/BelosBottomSolver.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/BottomSolver.h mode change 100755 => 100644 ippl/test/AMR/trilinos/CMakeLists.txt mode change 100755 => 100644 ippl/test/AMR/trilinos/FFTBottomSolver.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/FFTBottomSolver.h mode change 100755 => 100644 ippl/test/AMR/trilinos/Ifpack2Preconditioner.h mode change 100755 => 100644 ippl/test/AMR/trilinos/Ifpack2Preconditioner.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuBottomSolver.h mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuBottomSolver.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuPreconditioner.h mode change 100755 => 100644 ippl/test/AMR/trilinos/MueLuPreconditioner.hpp mode change 100755 => 100644 ippl/test/AMR/trilinos/build.h mode change 100755 => 100644 ippl/test/AMR/trilinos/testAmrMultigrid.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testBitPattern.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testBoundaryMatrix.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testBoundaryVector.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testCopy.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testInterpolationMatrix.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testLagrange.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testNoFine.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testPoissonMatrix.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testRestrictionMatrix.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testSmootherMatrix.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testSolverComparison.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testSpecialPoissonMatrix.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testTrilinosSolver.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/testWithFine.cpp mode change 100755 => 100644 ippl/test/AMR/trilinos/tools.h mode change 100755 => 100644 ippl/test/AMR/trilinos/trilinos2ippl.cpp mode change 100755 => 100644 ippl/test/AMR/writePlotFile.H mode change 100755 => 100644 ippl/test/CMakeLists.txt mode change 100755 => 100644 ippl/test/Cartesian/CMakeLists.txt mode change 100755 => 100644 ippl/test/Cartesian/Makefile mode change 100755 => 100644 ippl/test/Cartesian/TestCartesian-1.cpp mode change 100755 => 100644 ippl/test/CavityTrack/CMakeLists.txt mode change 100755 => 100644 ippl/test/CavityTrack/CavitySolver.cpp mode change 100755 => 100644 ippl/test/CavityTrack/CavitySolver.h mode change 100755 => 100644 ippl/test/CavityTrack/ChargedParticles/ChargedParticles.hh mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/Distribution.cpp mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/Distribution.hh mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/makefile mode change 100755 => 100644 ippl/test/CavityTrack/Distribution/ranlib.cc mode change 100755 => 100644 ippl/test/CavityTrack/Makefile mode change 100755 => 100644 ippl/test/CavityTrack/TestRun/fort.22 mode change 100755 => 100644 ippl/test/CavityTrack/Validation/CavAccel-1.mws mode change 100755 => 100644 ippl/test/CavityTrack/Validation/ReadMe mode change 100755 => 100644 ippl/test/CavityTrack/Validation/makePlot.glp mode change 100755 => 100644 ippl/test/CavityTrack/Validation/swk/getPosVel.swk mode change 100755 => 100644 ippl/test/CavityTrack/Validation/swk/sk-Tint.swk mode change 100755 => 100644 ippl/test/CavityTrack/Validation/swk/sk-Tint2.swk mode change 100755 => 100644 ippl/test/CavityTrack/Validation/trial.mws mode change 100755 => 100644 ippl/test/CavityTrack/cavitytrack.cpp mode change 100755 => 100644 ippl/test/FFT/CMakeLists.txt mode change 100755 => 100644 ippl/test/FFT/Makefile mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/TestA-DAccuracy.ps mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestD128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestD256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/data/TestD512.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestD128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestD256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/SSP/data/TestD512.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestFFT.cpp mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/TestRC.cpp mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA1024.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA512.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestA64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB1024.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB512.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestB64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC1024.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC128.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC16.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC32.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC512.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestC64.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/TestD256.out mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/data/makePlot.gpl mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/fftspeed.cpp mode change 100755 => 100644 ippl/test/FFT/SeaborgRes/makePlot.gpl mode change 100755 => 100644 ippl/test/FFT/TestFFT-1.cpp mode change 100755 => 100644 ippl/test/FFT/TestFFT-2.cpp mode change 100755 => 100644 ippl/test/FFT/TestFFT-XT3.cpp mode change 100755 => 100644 ippl/test/FFT/TestFFT.cpp.org mode change 100755 => 100644 ippl/test/FFT/TestFFTCos.cpp mode change 100755 => 100644 ippl/test/FFT/TestFFTSin.cpp mode change 100755 => 100644 ippl/test/FFT/TestRCMIC.cpp mode change 100755 => 100644 ippl/test/FFT/fftspeed.cpp mode change 100755 => 100644 ippl/test/FFT/nodefile mode change 100755 => 100644 ippl/test/FFT/run mode change 100755 => 100644 ippl/test/Hal/CMakeLists.txt mode change 100755 => 100644 ippl/test/Hal/Makefile mode change 100755 => 100644 ippl/test/Hal/yfld_q1.cpp mode change 100755 => 100644 ippl/test/Hal/yfld_q1_err.txt mode change 100755 => 100644 ippl/test/Hal/yfld_q2.cpp mode change 100755 => 100644 ippl/test/Makefile.def mode change 100755 => 100644 ippl/test/PwrSpec/CMakeLists.txt mode change 100755 => 100644 ippl/test/PwrSpec/Makefile mode change 100755 => 100644 ippl/test/PwrSpec/PwrSpec.cpp mode change 100755 => 100644 ippl/test/PwrSpec/PwrSpec.h mode change 100755 => 100644 ippl/test/PwrSpec/testPwrSpec.cpp mode change 100755 => 100644 ippl/test/adaTests/CMakeLists.txt mode change 100755 => 100644 ippl/test/adaTests/Makefile mode change 100755 => 100644 ippl/test/adaTests/TestDot1.cpp mode change 100755 => 100644 ippl/test/adaTests/TestDot2.cpp mode change 100755 => 100644 ippl/test/hdf5/.depend mode change 100755 => 100644 ippl/test/hdf5/CMakeLists.txt mode change 100755 => 100644 ippl/test/hdf5/Makefile mode change 100755 => 100644 ippl/test/hdf5/hdf5para-1.inp mode change 100755 => 100644 ippl/test/hdf5/hdf5para-2.inp mode change 100755 => 100644 ippl/test/hdf5/hdf5read-1.cpp mode change 100755 => 100644 ippl/test/hdf5/hdf5write-1.cpp mode change 100755 => 100644 ippl/test/hdf5/testHdf5-1.cpp mode change 100755 => 100644 ippl/test/nok/CMakeLists.txt mode change 100755 => 100644 ippl/test/nok/t3.cpp mode change 100755 => 100644 ippl/test/parallel/2ddens.cpp mode change 100755 => 100644 ippl/test/parallel/CMakeLists.txt mode change 100755 => 100644 ippl/test/parallel/Makefile mode change 100755 => 100644 ippl/test/parallel/dualmpi.cpp mode change 100755 => 100644 ippl/test/parallel/reduce-1.cpp mode change 100755 => 100644 ippl/test/parallel/reduce-2.cpp mode change 100755 => 100644 ippl/test/parallel/volley.cpp mode change 100755 => 100644 ippl/test/particle/1dperiodic.cpp mode change 100755 => 100644 ippl/test/particle/CMakeLists.txt mode change 100755 => 100644 ippl/test/particle/CacheTest.cpp mode change 100755 => 100644 ippl/test/particle/ChargedParticleFactory.hpp mode change 100755 => 100644 ippl/test/particle/DiscParticle.cpp mode change 100755 => 100644 ippl/test/particle/FFTFieldSolver.cpp mode change 100755 => 100644 ippl/test/particle/FieldCompare.cpp mode change 100755 => 100644 ippl/test/particle/Makefile mode change 100755 => 100644 ippl/test/particle/PIC2d.cpp mode change 100755 => 100644 ippl/test/particle/PIC3d.cpp mode change 100755 => 100644 ippl/test/particle/PIC3dBCo-p.cpp mode change 100755 => 100644 ippl/test/particle/PIC3dBCo-p.cpp.nok mode change 100755 => 100644 ippl/test/particle/PairTest.cpp mode change 100755 => 100644 ippl/test/particle/VTKFieldWriterParallel.hpp mode change 100755 => 100644 ippl/test/particle/chsr-1.cpp mode change 100755 => 100644 ippl/test/particle/chsr-2.cpp mode change 100755 => 100644 ippl/test/particle/cref.cpp mode change 100755 => 100644 ippl/test/particle/interpolate.cpp mode change 100755 => 100644 ippl/test/particle/loadbalance.cpp mode change 100755 => 100644 ippl/test/particle/neighNodeTest1.cpp mode change 100755 => 100644 ippl/test/particle/nodefile mode change 100755 => 100644 ippl/test/particle/p3m3d.cpp mode change 100755 => 100644 ippl/test/particle/p3m3dHeating.cpp mode change 100755 => 100644 ippl/test/particle/p3m3dMicrobunching.cpp mode change 100755 => 100644 ippl/test/particle/p3m3dRegressionTests.cpp mode change 100755 => 100644 ippl/test/particle/p3m3dTwoStream.cpp mode change 100755 => 100644 ippl/test/particle/p3m3dTwoStreamParallel.cpp mode change 100755 => 100644 ippl/test/particle/p3m3dplot.p mode change 100755 => 100644 ippl/test/particle/p3m3dreadme.txt mode change 100755 => 100644 ippl/test/particle/parexp.cpp mode change 100755 => 100644 ippl/test/particle/pbconds.cpp mode change 100755 => 100644 ippl/test/particle/pbconds3D.cpp mode change 100755 => 100644 ippl/test/particle/pbconds_vis.cpp mode change 100755 => 100644 ippl/test/particle/pdbtest.cpp mode change 100755 => 100644 ippl/test/particle/run mode change 100755 => 100644 ippl/test/particle/salman-1.cpp mode change 100755 => 100644 ippl/test/particle/spatial.cpp mode change 100755 => 100644 ippl/test/particle/spatial.cpp.org mode change 100755 => 100644 ippl/test/particle/test-scatter-1.cpp mode change 100755 => 100644 ippl/test/particle/test-update-1.cpp mode change 100755 => 100644 ippl/test/particle/test-update-1.sge mode change 100755 => 100644 ippl/test/particle/typtest.cpp mode change 100755 => 100644 ippl/test/particle/uniform.cpp mode change 100755 => 100644 ippl/test/particle/vlasovBB1D.cpp mode change 100755 => 100644 ippl/test/poissonsolvers/CMakeLists.txt mode change 100755 => 100644 ippl/test/poissonsolvers/Makefile mode change 100755 => 100644 ippl/test/poissonsolvers/ReadMe mode change 100755 => 100644 ippl/test/poissonsolvers/data1.dat mode change 100755 => 100644 ippl/test/poissonsolvers/femmgTest.cpp mode change 100755 => 100644 ippl/test/simple-new/.depend mode change 100755 => 100644 ippl/test/simple-new/CMakeLists.txt mode change 100755 => 100644 ippl/test/simple-new/Makefile mode change 100755 => 100644 ippl/test/simple-new/id-test1.cpp mode change 100755 => 100644 ippl/test/simple-new/memcheck-1.cpp mode change 100755 => 100644 ippl/test/simple-new/t1.cpp mode change 100755 => 100644 ippl/test/simple-new/t2.cpp mode change 100755 => 100644 ippl/test/simple-new/t3.cpp mode change 100755 => 100644 ippl/test/simple-new/t4.cpp mode change 100755 => 100644 ippl/test/simple-new/t5.cpp mode change 100755 => 100644 ippl/test/simple-new/t6.cpp mode change 100755 => 100644 ippl/test/simple-new/t7.cpp mode change 100755 => 100644 ippl/test/simple-new/t8.cpp mode change 100755 => 100644 ippl/test/simple/.depend mode change 100755 => 100644 ippl/test/simple/2ddiffusion-1.cpp mode change 100755 => 100644 ippl/test/simple/CMakeLists.txt mode change 100755 => 100644 ippl/test/simple/Clock.h mode change 100755 => 100644 ippl/test/simple/FVecOps.cpp mode change 100755 => 100644 ippl/test/simple/Makefile mode change 100755 => 100644 ippl/test/simple/ScalarAdvection.cpp mode change 100755 => 100644 ippl/test/simple/Slice.cpp mode change 100755 => 100644 ippl/test/simple/TestAverageVC_CV.cpp mode change 100755 => 100644 ippl/test/simple/TestBC.cpp mode change 100755 => 100644 ippl/test/simple/TestCartesianCentering.cpp mode change 100755 => 100644 ippl/test/simple/TestEureka.cpp mode change 100755 => 100644 ippl/test/simple/TestFieldDebug.cpp mode change 100755 => 100644 ippl/test/simple/TestFieldDebug2.cpp mode change 100755 => 100644 ippl/test/simple/TestParticleDebug.cpp mode change 100755 => 100644 ippl/test/simple/TestParticleDebugParallel.cpp mode change 100755 => 100644 ippl/test/simple/TestPeriodicBC.cpp mode change 100755 => 100644 ippl/test/simple/TestPeriodicBC.txt mode change 100755 => 100644 ippl/test/simple/TestPeriodicBCGuardCell1.txt mode change 100755 => 100644 ippl/test/simple/TestPeriodicBCGuardCell2.txt mode change 100755 => 100644 ippl/test/simple/TestScalarIndexing.cpp mode change 100755 => 100644 ippl/test/simple/TestTensorUnaryOps.cpp mode change 100755 => 100644 ippl/test/simple/balance.cpp mode change 100755 => 100644 ippl/test/simple/bc.cpp mode change 100755 => 100644 ippl/test/simple/bc2.cpp mode change 100755 => 100644 ippl/test/simple/bc3.cpp mode change 100755 => 100644 ippl/test/simple/bc_convert.cpp mode change 100755 => 100644 ippl/test/simple/bool.cpp mode change 100755 => 100644 ippl/test/simple/component.cpp mode change 100755 => 100644 ippl/test/simple/compressed.cpp mode change 100755 => 100644 ippl/test/simple/conejo_balance.cpp mode change 100755 => 100644 ippl/test/simple/ctoc.cpp mode change 100755 => 100644 ippl/test/simple/cv.cpp mode change 100755 => 100644 ippl/test/simple/doof2d_a.cpp mode change 100755 => 100644 ippl/test/simple/doof2d_complex.cpp mode change 100755 => 100644 ippl/test/simple/doof2d_file.cpp mode change 100755 => 100644 ippl/test/simple/doof2d_simple.cpp mode change 100755 => 100644 ippl/test/simple/doof2d_vis.cpp mode change 100755 => 100644 ippl/test/simple/doof3d_file.cpp mode change 100755 => 100644 ippl/test/simple/doof3d_vis.cpp mode change 100755 => 100644 ippl/test/simple/fermi-dirac-field.cpp mode change 100755 => 100644 ippl/test/simple/fivefields.cpp mode change 100755 => 100644 ippl/test/simple/float.cpp mode change 100755 => 100644 ippl/test/simple/flyercode.cpp mode change 100755 => 100644 ippl/test/simple/funcface.cpp mode change 100755 => 100644 ippl/test/simple/gcprint.cpp mode change 100755 => 100644 ippl/test/simple/itercompress.cpp mode change 100755 => 100644 ippl/test/simple/left.cpp mode change 100755 => 100644 ippl/test/simple/minmax.cpp mode change 100755 => 100644 ippl/test/simple/patches.cpp mode change 100755 => 100644 ippl/test/simple/reduce.cpp mode change 100755 => 100644 ippl/test/simple/reduceloc.cpp mode change 100755 => 100644 ippl/test/simple/repartition.cpp mode change 100755 => 100644 ippl/test/simple/repartition.cpp.org mode change 100755 => 100644 ippl/test/simple/send mode change 100755 => 100644 ippl/test/simple/single.cpp mode change 100755 => 100644 ippl/test/simple/slices.cpp mode change 100755 => 100644 ippl/test/simple/soffset.cpp mode change 100755 => 100644 ippl/test/simple/subdivide.cpp mode change 100755 => 100644 ippl/test/simple/subreadtest.cpp mode change 100755 => 100644 ippl/test/simple/t.cpp mode change 100755 => 100644 ippl/test/simple/t1.cpp mode change 100755 => 100644 ippl/test/simple/t2.cpp mode change 100755 => 100644 ippl/test/simple/t3.cpp mode change 100755 => 100644 ippl/test/simple/t4.cpp mode change 100755 => 100644 ippl/test/simple/t5.cpp mode change 100755 => 100644 ippl/test/simple/t6.cpp mode change 100755 => 100644 ippl/test/simple/t7.cpp mode change 100755 => 100644 ippl/test/simple/t8.cpp mode change 100755 => 100644 ippl/test/simple/transpose.cpp mode change 100755 => 100644 ippl/test/simple/tv.cpp mode change 100755 => 100644 ippl/test/simple/tz.cpp mode change 100755 => 100644 ippl/test/simple/vc.cpp mode change 100755 => 100644 ippl/test/sindex/CMakeLists.txt mode change 100755 => 100644 ippl/test/sindex/Makefile mode change 100755 => 100644 ippl/test/sindex/TestSIndex.cpp mode change 100755 => 100644 ippl/test/sindex/compsindex.cpp mode change 100755 => 100644 ippl/test/sindex/sindex.cpp mode change 100755 => 100644 ippl/test/sindex/subfield.cpp mode change 100755 => 100644 ippl/test/sindex/vertcell.cpp mode change 100755 => 100644 ippl/test/speed/CMakeLists.txt mode change 100755 => 100644 ippl/test/speed/Makefile mode change 100755 => 100644 ippl/test/speed/diskfield.cpp mode change 100755 => 100644 ippl/test/speed/gcspeed.cpp mode change 100755 => 100644 ippl/test/speed/make.out mode change 100755 => 100644 ippl/test/speed/particle_simple.cpp mode change 100755 => 100644 ippl/test/speed/reducespeed.cpp mode change 100755 => 100644 ippl/test/speed/speed1.cpp mode change 100755 => 100644 ippl/test/speed/stencil1.cpp mode change 100755 => 100644 ippl/test/speed/stencil_c.c mode change 100755 => 100644 ippl/test/toyfdtf/CMakeLists.txt mode change 100755 => 100644 ippl/test/toyfdtf/Makefile mode change 100755 => 100644 ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.cpp mode change 100755 => 100644 ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h mode change 100755 => 100644 ippl/test/toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp mode change 100755 => 100644 ippl/test/toyfdtf/ipplToyFDTD2.cpp mode change 100755 => 100644 ippl/test/ttrack/CMakeLists.txt mode change 100755 => 100644 ippl/test/ttrack/Doxyfile mode change 100755 => 100644 ippl/test/ttrack/GTChargedParticles/GTChargedParticles.cpp mode change 100755 => 100644 ippl/test/ttrack/GTChargedParticles/GTChargedParticles.hh mode change 100755 => 100644 ippl/test/ttrack/GTConfigure/GTConfigure.hh mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/GTDistribution.cc mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/GTDistribution.hh mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/hammersley.cpp mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/hammersley.h mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/ranlib.cc mode change 100755 => 100644 ippl/test/ttrack/GTDistribution/ranlib.h mode change 100755 => 100644 ippl/test/ttrack/GTElements/ACG.cpp mode change 100755 => 100644 ippl/test/ttrack/GTElements/ACG.h mode change 100755 => 100644 ippl/test/ttrack/GTElements/Elements.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTElemData.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTGenElement.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTIBS.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTMultipoleMap.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTRFCavityMap.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTRadiation.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/GTRecquadMap.hh mode change 100755 => 100644 ippl/test/ttrack/GTElements/IBSProcess.cpp mode change 100755 => 100644 ippl/test/ttrack/GTElements/IBSProcess.h mode change 100755 => 100644 ippl/test/ttrack/GTElements/Merlin/PhotonSpectrumGen.cpp mode change 100755 => 100644 ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.cpp mode change 100755 => 100644 ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.h mode change 100755 => 100644 ippl/test/ttrack/GTUtilities/GTConst.hh mode change 100755 => 100644 ippl/test/ttrack/GTUtilities/GTPhysics.cc mode change 100755 => 100644 ippl/test/ttrack/GTUtilities/GTPhysics.h mode change 100755 => 100644 ippl/test/ttrack/Makefile mode change 100755 => 100644 ippl/test/ttrack/Makefile.def mode change 100755 => 100644 ippl/test/ttrack/README mode change 100755 => 100644 ippl/test/ttrack/aur-1.dat mode change 100755 => 100644 ippl/test/ttrack/dsmc.cpp mode change 100755 => 100644 ippl/test/ttrack/report/direct.tex mode change 100755 => 100644 ippl/test/ttrack/report/divrad.png mode change 100755 => 100644 ippl/test/ttrack/report/feynman.png mode change 100755 => 100644 ippl/test/ttrack/report/future.tex mode change 100755 => 100644 ippl/test/ttrack/report/implementation.tex mode change 100755 => 100644 ippl/test/ttrack/report/introduction.tex mode change 100755 => 100644 ippl/test/ttrack/report/literature.tex mode change 100755 => 100644 ippl/test/ttrack/report/longtermbehavior.png mode change 100755 => 100644 ippl/test/ttrack/report/presentation/aurlong.pdf mode change 100755 => 100644 ippl/test/ttrack/report/presentation/inter.pdf mode change 100755 => 100644 ippl/test/ttrack/report/presentation/lowemi.dat mode change 100755 => 100644 ippl/test/ttrack/report/presentation/presentation.tex mode change 100755 => 100644 ippl/test/ttrack/report/presentation/scaling.dat mode change 100755 => 100644 ippl/test/ttrack/report/presentation/sls-acceptancevslifetime.dat mode change 100755 => 100644 ippl/test/ttrack/report/presentation/sls-longterm.pdf mode change 100755 => 100644 ippl/test/ttrack/report/radius.png mode change 100755 => 100644 ippl/test/ttrack/report/radius2.png mode change 100755 => 100644 ippl/test/ttrack/report/report.tex mode change 100755 => 100644 ippl/test/ttrack/report/results.tex mode change 100755 => 100644 ippl/test/ttrack/report/simulation.tex mode change 100755 => 100644 ippl/test/ttrack/report/theory.tex mode change 100755 => 100644 ippl/test/ttrack/sls-1.dat mode change 100755 => 100644 ippl/test/ttrack/touscheklifetime.nb mode change 100755 => 100644 ippl/test/twostream-1/.depend mode change 100755 => 100644 ippl/test/twostream-1/CMakeLists.txt mode change 100755 => 100644 ippl/test/twostream-1/Makefile mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Flagger.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Flagger.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/IdealMapper.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/IdealMapper.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/LinearMapper.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/LinearMapper.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Mapper.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Mapper.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartBunch.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartBunch.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartData.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/PartData.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Particle.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Particle.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Surveyor.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Surveyor.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinMapper.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinMapper.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinTracker.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/ThinTracker.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Tracker.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/Tracker.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Algorithms/rbendmap.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/MemoryManagement/OwnPtr.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/MemoryManagement/Pointer.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/MemoryManagement/RCObject.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/AbsFileStream.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/AbsFileStream.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/ClassicParser.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/ClassicParser.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/FileStream.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/FileStream.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Parser.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Parser.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/SimpleStatement.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/SimpleStatement.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Statement.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Statement.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/StringStream.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/StringStream.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TerminalStream.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TerminalStream.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Token.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/Token.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TokenStream.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Parser/TokenStream.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Physics/Physics.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Physics/Physics.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ArithmeticError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ArithmeticError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/AttributeError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/AttributeError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ClassicException.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ClassicException.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ConvergenceError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ConvergenceError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DivideError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DivideError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DomainError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/DomainError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/EigenvalueError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/EigenvalueError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/FormatError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/FormatError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Gauss.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Gauss.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/InverseGauss.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/InverseGauss.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/LogicalError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/LogicalError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/NormalFormError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/NormalFormError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/OverflowError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/OverflowError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ParseError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/ParseError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Random.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/Random.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/RangeError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/RangeError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SizeError.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/SizeError.h mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/User0.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/User1.cpp mode change 100755 => 100644 ippl/test/twostream-1/Utility/Utilities/User2.cpp mode change 100755 => 100644 ippl/test/twostream-1/anal.gpl mode change 100755 => 100644 ippl/test/twostream-1/anal.kumac mode change 100755 => 100644 ippl/test/twostream-1/analtest.gpl mode change 100755 => 100644 ippl/test/twostream-1/constfoc-1.inp mode change 100755 => 100644 ippl/test/twostream-1/data1.dat mode change 100755 => 100644 ippl/test/twostream-1/data2.dat mode change 100755 => 100644 ippl/test/twostream-1/driftsc-1.inp mode change 100755 => 100644 ippl/test/twostream-1/driftsc-2.inp mode change 100755 => 100644 ippl/test/twostream-1/test-1.inp mode change 100755 => 100644 ippl/test/twostream-1/test-2.inp mode change 100755 => 100644 ippl/test/twostream-1/twostream-2.cpp mode change 100755 => 100644 opt-pilot/.gitignore mode change 100755 => 100644 opt-pilot/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Comm/CommSplitter.h mode change 100755 => 100644 opt-pilot/Comm/MasterGraph/NDimMesh.h mode change 100755 => 100644 opt-pilot/Comm/MasterGraph/NoMasterGraph.h mode change 100755 => 100644 opt-pilot/Comm/MasterGraph/SocialNetworkGraph.h mode change 100755 => 100644 opt-pilot/Comm/MasterNode.h mode change 100755 => 100644 opt-pilot/Comm/Splitter/GeometricStrategy.h mode change 100755 => 100644 opt-pilot/Comm/Splitter/ManyMasterSplit.h mode change 100755 => 100644 opt-pilot/Comm/Splitter/RandomStrategy.h mode change 100755 => 100644 opt-pilot/Comm/Splitter/ReadSplitFromFile.h mode change 100755 => 100644 opt-pilot/Comm/Splitter/SplitStrategy.h mode change 100755 => 100644 opt-pilot/Comm/Topology/CommTopology.h mode change 100755 => 100644 opt-pilot/Comm/Topology/NoCommTopology.h mode change 100755 => 100644 opt-pilot/Comm/types.h mode change 100755 => 100644 opt-pilot/Doxyfile mode change 100755 => 100644 opt-pilot/Drivers/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Drivers/pisa-opal/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Drivers/pisa-opal/pisa-opal.cpp mode change 100755 => 100644 opt-pilot/Drivers/pisa-standalone/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Drivers/pisa-standalone/pisa-standalone.cpp mode change 100755 => 100644 opt-pilot/Expression/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Expression/Expression.h mode change 100755 => 100644 opt-pilot/Expression/FromFile.cpp mode change 100755 => 100644 opt-pilot/Expression/FromFile.h mode change 100755 => 100644 opt-pilot/Expression/GlobalFunctions.h mode change 100755 => 100644 opt-pilot/Expression/Parser/annotation.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/ast.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/error_handler.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/evaluator.cpp mode change 100755 => 100644 opt-pilot/Expression/Parser/evaluator.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/expression.cpp mode change 100755 => 100644 opt-pilot/Expression/Parser/expression.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/expression_def.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/function.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/requirements.hpp mode change 100755 => 100644 opt-pilot/Expression/Parser/skipper.hpp mode change 100755 => 100644 opt-pilot/Expression/ProbeVariable.h mode change 100755 => 100644 opt-pilot/Expression/PythonExpr.h mode change 100755 => 100644 opt-pilot/Expression/RadialPeak.cpp mode change 100755 => 100644 opt-pilot/Expression/RadialPeak.h mode change 100755 => 100644 opt-pilot/Expression/SDDSVariable.h mode change 100755 => 100644 opt-pilot/Expression/SumErrSq.cpp mode change 100755 => 100644 opt-pilot/Expression/SumErrSq.h mode change 100755 => 100644 opt-pilot/Expression/SumErrSqRadialPeak.cpp mode change 100755 => 100644 opt-pilot/Expression/SumErrSqRadialPeak.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/BlendCrossover.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/FixedPisaNsga2.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc mode change 100755 => 100644 opt-pilot/Optimizer/EA/IndependentBitMutation.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/Individual.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/NaiveOnePointCrossover.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/NaiveUniformCrossover.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/OneBitMutation.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/Population.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/SimulatedBinaryCrossover.h mode change 100755 => 100644 opt-pilot/Optimizer/EA/Variator.h mode change 100755 => 100644 opt-pilot/Optimizer/Optimizer.h mode change 100755 => 100644 opt-pilot/Pilot/Pilot.h mode change 100755 => 100644 opt-pilot/Pilot/Poller.h mode change 100755 => 100644 opt-pilot/Pilot/Worker.h mode change 100755 => 100644 opt-pilot/Problems/FON.h mode change 100755 => 100644 opt-pilot/Problems/ProblemInterface.h mode change 100755 => 100644 opt-pilot/README.mkd mode change 100755 => 100644 opt-pilot/Simulation/FunctionEvaluator.cpp mode change 100755 => 100644 opt-pilot/Simulation/FunctionEvaluator.h mode change 100755 => 100644 opt-pilot/Simulation/GenerateOpalSimulation.h mode change 100755 => 100644 opt-pilot/Simulation/Simulation.h mode change 100755 => 100644 opt-pilot/Tests/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Tests/CmdArgumentsTest.cpp mode change 100755 => 100644 opt-pilot/Tests/ExpressionTest.cpp mode change 100755 => 100644 opt-pilot/Tests/FromFileExpressionTest.cpp mode change 100755 => 100644 opt-pilot/Tests/HashNameGeneratorTest.cpp mode change 100755 => 100644 opt-pilot/Tests/Homotopy/Problem.in mode change 100755 => 100644 opt-pilot/Tests/IndividualTest.cpp mode change 100755 => 100644 opt-pilot/Tests/MPIHelperTest.cpp mode change 100755 => 100644 opt-pilot/Tests/ManagedIDsTest.cpp mode change 100755 => 100644 opt-pilot/Tests/Opal/FiPha3Opt1.data mode change 100755 => 100644 opt-pilot/Tests/Opal/FiPha3Opt1.tmpl mode change 100755 => 100644 opt-pilot/Tests/Opal/fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat mode change 100755 => 100644 opt-pilot/Tests/Opal/fieldmaps/NEW_SINGLE_SOL_NOFRINGE_OPAL.dat mode change 100755 => 100644 opt-pilot/Tests/Opal/nsga2/nsga2_param.txt mode change 100755 => 100644 opt-pilot/Tests/OpalInputFileParserTest.cpp mode change 100755 => 100644 opt-pilot/Tests/PisaStandAlone/Problem.in mode change 100755 => 100644 opt-pilot/Tests/PisaStandAlone/nsga2/nsga2_param.txt mode change 100755 => 100644 opt-pilot/Tests/PopulationTest.cpp mode change 100755 => 100644 opt-pilot/Tests/PythonExprTest.cpp mode change 100755 => 100644 opt-pilot/Tests/SDDSParserTest.cpp mode change 100755 => 100644 opt-pilot/Tests/SumErrSqExpressionTest.cpp mode change 100755 => 100644 opt-pilot/Tests/generatesim.cpp mode change 100755 => 100644 opt-pilot/Tests/gentest.data mode change 100755 => 100644 opt-pilot/Tests/gentest.tmpl mode change 100755 => 100644 opt-pilot/Tests/resources/fromfile_test.dat mode change 100755 => 100644 opt-pilot/Tests/resources/fromfile_test2.dat mode change 100755 => 100644 opt-pilot/Tests/resources/measurement_test.dat mode change 100755 => 100644 opt-pilot/Tests/resources/test.in mode change 100755 => 100644 opt-pilot/Tests/resources/test.py mode change 100755 => 100644 opt-pilot/Tests/resources/test.stat mode change 100755 => 100644 opt-pilot/Tests/runsim.cpp mode change 100755 => 100644 opt-pilot/Tests/schedsim.cpp mode change 100755 => 100644 opt-pilot/Util/AsyncSendBuffers.h mode change 100755 => 100644 opt-pilot/Util/CMakeLists.txt mode change 100755 => 100644 opt-pilot/Util/CmdArguments.cpp mode change 100755 => 100644 opt-pilot/Util/CmdArguments.h mode change 100755 => 100644 opt-pilot/Util/CommentAnnotatedInputFileParser.cpp mode change 100755 => 100644 opt-pilot/Util/CommentAnnotatedInputFileParser.h mode change 100755 => 100644 opt-pilot/Util/HashNameGenerator.h mode change 100755 => 100644 opt-pilot/Util/InputFileParser.h mode change 100755 => 100644 opt-pilot/Util/MPIHelper.cpp mode change 100755 => 100644 opt-pilot/Util/MPIHelper.h mode change 100755 => 100644 opt-pilot/Util/ManagedIDs.h mode change 100755 => 100644 opt-pilot/Util/OpalInputFileParser.h mode change 100755 => 100644 opt-pilot/Util/OptPilotException.h mode change 100755 => 100644 opt-pilot/Util/PeakReader.cpp mode change 100755 => 100644 opt-pilot/Util/PeakReader.h mode change 100755 => 100644 opt-pilot/Util/PlainInputFileParser.h mode change 100755 => 100644 opt-pilot/Util/ProbeReader.cpp mode change 100755 => 100644 opt-pilot/Util/ProbeReader.h mode change 100755 => 100644 opt-pilot/Util/SDDSParser.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser.h mode change 100755 => 100644 opt-pilot/Util/SDDSParser/SDDSParserException.h mode change 100755 => 100644 opt-pilot/Util/SDDSParser/array.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/array.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/array_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/associate.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/associate.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/associate_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/ast.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/ast.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/ast_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/column.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/column.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/column_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/data.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/data.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/data_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/description.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/description.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/description_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/error_handler.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/file.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/file.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/file_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/include.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/include.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/include_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/parameter.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/parameter.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/parameter_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/skipper.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/version.cpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/version.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSParser/version_def.hpp mode change 100755 => 100644 opt-pilot/Util/SDDSReader.h mode change 100755 => 100644 opt-pilot/Util/Statistics.h mode change 100755 => 100644 opt-pilot/Util/Trace/CoutSink.h mode change 100755 => 100644 opt-pilot/Util/Trace/FileSink.h mode change 100755 => 100644 opt-pilot/Util/Trace/MyPid.h mode change 100755 => 100644 opt-pilot/Util/Trace/Timestamp.h mode change 100755 => 100644 opt-pilot/Util/Trace/Trace.h mode change 100755 => 100644 opt-pilot/Util/Trace/TraceComponent.h mode change 100755 => 100644 opt-pilot/Util/Types.h mode change 100755 => 100644 opt-pilot/config.h.in mode change 100755 => 100644 opt-pilot/extlib/CMakeLists.txt mode change 100755 => 100644 opt-pilot/extlib/nsga2/PISA_cfg mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2.c mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2.h mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_documentation.txt mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_functions.c mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_io.c mode change 100755 => 100644 opt-pilot/extlib/nsga2/nsga2_param.txt mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/LICENSE mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/README.TXT mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/avl.h mode change 100755 => 100644 opt-pilot/extlib/wfgHypervolume/wfg.h mode change 100755 => 100644 src/AbstractObjects/Action.cpp mode change 100755 => 100644 src/AbstractObjects/Action.h mode change 100755 => 100644 src/AbstractObjects/Attribute.cpp mode change 100755 => 100644 src/AbstractObjects/Attribute.h mode change 100755 => 100644 src/AbstractObjects/AttributeBase.cpp mode change 100755 => 100644 src/AbstractObjects/AttributeBase.h mode change 100755 => 100644 src/AbstractObjects/AttributeHandler.cpp mode change 100755 => 100644 src/AbstractObjects/AttributeHandler.h mode change 100755 => 100644 src/AbstractObjects/BeamSequence.cpp mode change 100755 => 100644 src/AbstractObjects/BeamSequence.h mode change 100755 => 100644 src/AbstractObjects/CMakeLists.txt mode change 100755 => 100644 src/AbstractObjects/Definition.cpp mode change 100755 => 100644 src/AbstractObjects/Definition.h mode change 100755 => 100644 src/AbstractObjects/Directory.cpp mode change 100755 => 100644 src/AbstractObjects/Directory.h mode change 100755 => 100644 src/AbstractObjects/Editor.cpp mode change 100755 => 100644 src/AbstractObjects/Editor.h mode change 100755 => 100644 src/AbstractObjects/Element.cpp mode change 100755 => 100644 src/AbstractObjects/Element.h mode change 100755 => 100644 src/AbstractObjects/Expressions.h mode change 100755 => 100644 src/AbstractObjects/Invalidator.cpp mode change 100755 => 100644 src/AbstractObjects/Invalidator.h mode change 100755 => 100644 src/AbstractObjects/Object.cpp mode change 100755 => 100644 src/AbstractObjects/Object.h mode change 100755 => 100644 src/AbstractObjects/ObjectFunction.cpp mode change 100755 => 100644 src/AbstractObjects/ObjectFunction.h mode change 100755 => 100644 src/AbstractObjects/OpalData.cpp mode change 100755 => 100644 src/AbstractObjects/OpalData.h mode change 100755 => 100644 src/AbstractObjects/PlaceRep.cpp mode change 100755 => 100644 src/AbstractObjects/PlaceRep.h mode change 100755 => 100644 src/AbstractObjects/RangeRep.cpp mode change 100755 => 100644 src/AbstractObjects/RangeRep.h mode change 100755 => 100644 src/AbstractObjects/Table.cpp mode change 100755 => 100644 src/AbstractObjects/Table.h mode change 100755 => 100644 src/AbstractObjects/TableRowRep.cpp mode change 100755 => 100644 src/AbstractObjects/TableRowRep.h mode change 100755 => 100644 src/AbstractObjects/ValueDefinition.cpp mode change 100755 => 100644 src/AbstractObjects/ValueDefinition.h mode change 100755 => 100644 src/Algebra/CMakeLists.txt mode change 100755 => 100644 src/Algebra/QRSolver.cpp mode change 100755 => 100644 src/Algebra/QRSolver.h mode change 100755 => 100644 src/Algorithms/AutophaseTracker.cpp mode change 100755 => 100644 src/Algorithms/AutophaseTracker.h mode change 100755 => 100644 src/Algorithms/BeamBeam3D.cpp mode change 100755 => 100644 src/Algorithms/BeamBeam3D.h mode change 100755 => 100644 src/Algorithms/CMakeLists.txt mode change 100755 => 100644 src/Algorithms/CavityAutophaser.cpp mode change 100755 => 100644 src/Algorithms/CavityAutophaser.h mode change 100755 => 100644 src/Algorithms/Ctunes.h mode change 100755 => 100644 src/Algorithms/Ctunes.hpp mode change 100755 => 100644 src/Algorithms/IndexMap.cpp mode change 100755 => 100644 src/Algorithms/IndexMap.h mode change 100755 => 100644 src/Algorithms/LieMapper.cpp mode change 100755 => 100644 src/Algorithms/LieMapper.h mode change 100755 => 100644 src/Algorithms/MPSplitIntegrator.cpp mode change 100755 => 100644 src/Algorithms/MPSplitIntegrator.h mode change 100755 => 100644 src/Algorithms/NilTracker.cpp mode change 100755 => 100644 src/Algorithms/NilTracker.h mode change 100755 => 100644 src/Algorithms/OrbitThreader.cpp mode change 100755 => 100644 src/Algorithms/OrbitThreader.h mode change 100755 => 100644 src/Algorithms/ParallelCyclotronTracker.cpp mode change 100755 => 100644 src/Algorithms/ParallelCyclotronTracker.h mode change 100755 => 100644 src/Algorithms/ParallelSliceTracker.cpp mode change 100755 => 100644 src/Algorithms/ParallelSliceTracker.h mode change 100755 => 100644 src/Algorithms/ParallelTTracker.cpp mode change 100755 => 100644 src/Algorithms/ParallelTTracker.h mode change 100755 => 100644 src/Algorithms/StatisticalErrors.cpp mode change 100755 => 100644 src/Algorithms/StatisticalErrors.h mode change 100755 => 100644 src/Algorithms/StatisticalErrorsUtilities.cpp mode change 100755 => 100644 src/Algorithms/StatisticalErrorsUtilities.h mode change 100755 => 100644 src/Algorithms/ThickMapper.cpp mode change 100755 => 100644 src/Algorithms/ThickMapper.h mode change 100755 => 100644 src/Algorithms/ThickTracker.cpp mode change 100755 => 100644 src/Algorithms/ThickTracker.h mode change 100755 => 100644 src/Algorithms/TransportMapper.cpp mode change 100755 => 100644 src/Algorithms/TransportMapper.h mode change 100755 => 100644 src/Algorithms/bet/BetError.cpp mode change 100755 => 100644 src/Algorithms/bet/BetError.h mode change 100755 => 100644 src/Algorithms/bet/EnvelopeBunch.cpp mode change 100755 => 100644 src/Algorithms/bet/EnvelopeBunch.h mode change 100755 => 100644 src/Algorithms/bet/EnvelopeSlice.cpp mode change 100755 => 100644 src/Algorithms/bet/EnvelopeSlice.h mode change 100755 => 100644 src/Algorithms/bet/error.cpp mode change 100755 => 100644 src/Algorithms/bet/error.h mode change 100755 => 100644 src/Algorithms/bet/math/functions.cpp mode change 100755 => 100644 src/Algorithms/bet/math/functions.h mode change 100755 => 100644 src/Algorithms/bet/math/integrate.cpp mode change 100755 => 100644 src/Algorithms/bet/math/integrate.h mode change 100755 => 100644 src/Algorithms/bet/math/interpol.cpp mode change 100755 => 100644 src/Algorithms/bet/math/interpol.h mode change 100755 => 100644 src/Algorithms/bet/math/linfit.cpp mode change 100755 => 100644 src/Algorithms/bet/math/linfit.h mode change 100755 => 100644 src/Algorithms/bet/math/rk.cpp mode change 100755 => 100644 src/Algorithms/bet/math/rk.h mode change 100755 => 100644 src/Algorithms/bet/math/root.cpp mode change 100755 => 100644 src/Algorithms/bet/math/root.h mode change 100755 => 100644 src/Algorithms/bet/math/savgol.cpp mode change 100755 => 100644 src/Algorithms/bet/math/savgol.h mode change 100755 => 100644 src/Algorithms/bet/math/sort.cpp mode change 100755 => 100644 src/Algorithms/bet/math/sort.h mode change 100755 => 100644 src/Algorithms/bet/math/svdfit.cpp mode change 100755 => 100644 src/Algorithms/bet/math/svdfit.h mode change 100755 => 100644 src/Algorithms/bet/profile.cpp mode change 100755 => 100644 src/Algorithms/bet/profile.h mode change 100755 => 100644 src/Algorithms/lomb.h mode change 100755 => 100644 src/Algorithms/lomb.hpp mode change 100755 => 100644 src/Amr/AbstractAmrWriter.h mode change 100755 => 100644 src/Amr/AmrBoxLib.cpp mode change 100755 => 100644 src/Amr/AmrBoxLib.h mode change 100755 => 100644 src/Amr/AmrBoxLib_F.h mode change 100755 => 100644 src/Amr/AmrDefs.h mode change 100755 => 100644 src/Amr/AmrObject.cpp mode change 100755 => 100644 src/Amr/AmrObject.h mode change 100755 => 100644 src/Amr/AmrPythonWriter.cpp mode change 100755 => 100644 src/Amr/AmrPythonWriter.h mode change 100755 => 100644 src/Amr/AmrSliceWriter.cpp mode change 100755 => 100644 src/Amr/AmrSliceWriter.h mode change 100755 => 100644 src/Amr/AmrYtWriter.cpp mode change 100755 => 100644 src/Amr/AmrYtWriter.h mode change 100755 => 100644 src/Amr/BoxLibLayout.h mode change 100755 => 100644 src/Amr/BoxLibLayout.hpp mode change 100755 => 100644 src/Amr/BoxLibParticle.h mode change 100755 => 100644 src/Amr/BoxLibParticle.hpp mode change 100755 => 100644 src/Amr/CMakeLists.txt mode change 100755 => 100644 src/Amr/Tagging_nd.f90 mode change 100755 => 100644 src/Aperture/Aperture.cpp mode change 100755 => 100644 src/Aperture/Aperture.h mode change 100755 => 100644 src/Aperture/CMakeLists.txt mode change 100755 => 100644 src/Aperture/Split.cpp mode change 100755 => 100644 src/Aperture/Split.h mode change 100755 => 100644 src/Attributes/Attributes.cpp mode change 100755 => 100644 src/Attributes/Attributes.h mode change 100755 => 100644 src/Attributes/Bool.cpp mode change 100755 => 100644 src/Attributes/Bool.h mode change 100755 => 100644 src/Attributes/BoolArray.cpp mode change 100755 => 100644 src/Attributes/BoolArray.h mode change 100755 => 100644 src/Attributes/CMakeLists.txt mode change 100755 => 100644 src/Attributes/Place.cpp mode change 100755 => 100644 src/Attributes/Place.h mode change 100755 => 100644 src/Attributes/Range.cpp mode change 100755 => 100644 src/Attributes/Range.h mode change 100755 => 100644 src/Attributes/Real.cpp mode change 100755 => 100644 src/Attributes/Real.h mode change 100755 => 100644 src/Attributes/RealArray.cpp mode change 100755 => 100644 src/Attributes/RealArray.h mode change 100755 => 100644 src/Attributes/Reference.cpp mode change 100755 => 100644 src/Attributes/Reference.h mode change 100755 => 100644 src/Attributes/StringArray.cpp mode change 100755 => 100644 src/Attributes/StringArray.h mode change 100755 => 100644 src/Attributes/TableRow.cpp mode change 100755 => 100644 src/Attributes/TableRow.h mode change 100755 => 100644 src/Attributes/TokenList.cpp mode change 100755 => 100644 src/Attributes/TokenList.h mode change 100755 => 100644 src/Attributes/TokenListArray.cpp mode change 100755 => 100644 src/Attributes/TokenListArray.h mode change 100755 => 100644 src/Attributes/opalstr.cpp mode change 100755 => 100644 src/Attributes/opalstr.h mode change 100755 => 100644 src/BasicActions/CMakeLists.txt mode change 100755 => 100644 src/BasicActions/Call.cpp mode change 100755 => 100644 src/BasicActions/Call.h mode change 100755 => 100644 src/BasicActions/Dump.cpp mode change 100755 => 100644 src/BasicActions/Dump.h mode change 100755 => 100644 src/BasicActions/DumpEMFields.cpp mode change 100755 => 100644 src/BasicActions/DumpEMFields.h mode change 100755 => 100644 src/BasicActions/DumpFields.cpp mode change 100755 => 100644 src/BasicActions/DumpFields.h mode change 100755 => 100644 src/BasicActions/Echo.cpp mode change 100755 => 100644 src/BasicActions/Echo.h mode change 100755 => 100644 src/BasicActions/Help.cpp mode change 100755 => 100644 src/BasicActions/Help.h mode change 100755 => 100644 src/BasicActions/Option.cpp mode change 100755 => 100644 src/BasicActions/Option.h mode change 100755 => 100644 src/BasicActions/PSystem.cpp mode change 100755 => 100644 src/BasicActions/PSystem.h mode change 100755 => 100644 src/BasicActions/Quit.cpp mode change 100755 => 100644 src/BasicActions/Quit.h mode change 100755 => 100644 src/BasicActions/Save.cpp mode change 100755 => 100644 src/BasicActions/Save.h mode change 100755 => 100644 src/BasicActions/Select.cpp mode change 100755 => 100644 src/BasicActions/Select.h mode change 100755 => 100644 src/BasicActions/Show.cpp mode change 100755 => 100644 src/BasicActions/Show.h mode change 100755 => 100644 src/BasicActions/Stop.cpp mode change 100755 => 100644 src/BasicActions/Stop.h mode change 100755 => 100644 src/BasicActions/System.cpp mode change 100755 => 100644 src/BasicActions/System.h mode change 100755 => 100644 src/BasicActions/Title.cpp mode change 100755 => 100644 src/BasicActions/Title.h mode change 100755 => 100644 src/BasicActions/Value.cpp mode change 100755 => 100644 src/BasicActions/Value.h mode change 100755 => 100644 src/BasicActions/What.cpp mode change 100755 => 100644 src/BasicActions/What.h mode change 100755 => 100644 src/CMakeLists.txt mode change 100755 => 100644 src/Classic/AbsBeamline/AlignWrapper.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/AlignWrapper.h mode change 100755 => 100644 src/Classic/AbsBeamline/AttributeSet.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/AttributeSet.h mode change 100755 => 100644 src/Classic/AbsBeamline/BeamBeam.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/BeamBeam.h mode change 100755 => 100644 src/Classic/AbsBeamline/BeamlineVisitor.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/BeamlineVisitor.h mode change 100755 => 100644 src/Classic/AbsBeamline/Bend.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Bend.h mode change 100755 => 100644 src/Classic/AbsBeamline/BendBase.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/BendBase.h mode change 100755 => 100644 src/Classic/AbsBeamline/CMakeLists.txt mode change 100755 => 100644 src/Classic/AbsBeamline/Collimator.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Collimator.h mode change 100755 => 100644 src/Classic/AbsBeamline/Component.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Component.h mode change 100755 => 100644 src/Classic/AbsBeamline/Corrector.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Corrector.h mode change 100755 => 100644 src/Classic/AbsBeamline/Cyclotron.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Cyclotron.h mode change 100755 => 100644 src/Classic/AbsBeamline/CyclotronValley.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/CyclotronValley.h mode change 100755 => 100644 src/Classic/AbsBeamline/Degrader.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Degrader.h mode change 100755 => 100644 src/Classic/AbsBeamline/Diagnostic.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Diagnostic.h mode change 100755 => 100644 src/Classic/AbsBeamline/Drift.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Drift.h mode change 100755 => 100644 src/Classic/AbsBeamline/ElementBase.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/ElementBase.h mode change 100755 => 100644 src/Classic/AbsBeamline/ElementImage.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/ElementImage.h mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/CMakeLists.txt mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.h mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Enge.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Enge.h mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Tanh.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/EndFieldModel/Tanh.h mode change 100755 => 100644 src/Classic/AbsBeamline/Integrator.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Integrator.h mode change 100755 => 100644 src/Classic/AbsBeamline/Lambertson.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Lambertson.h mode change 100755 => 100644 src/Classic/AbsBeamline/Marker.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Marker.h mode change 100755 => 100644 src/Classic/AbsBeamline/Monitor.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Monitor.h mode change 100755 => 100644 src/Classic/AbsBeamline/Multipole.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Multipole.h mode change 100755 => 100644 src/Classic/AbsBeamline/MultipoleT.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/MultipoleT.h mode change 100755 => 100644 src/Classic/AbsBeamline/MultipoleT.png mode change 100755 => 100644 src/Classic/AbsBeamline/Offset.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Offset.h mode change 100755 => 100644 src/Classic/AbsBeamline/ParallelPlate.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/ParallelPlate.h mode change 100755 => 100644 src/Classic/AbsBeamline/Patch.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Patch.h mode change 100755 => 100644 src/Classic/AbsBeamline/Probe.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Probe.h mode change 100755 => 100644 src/Classic/AbsBeamline/RBend.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/RBend.h mode change 100755 => 100644 src/Classic/AbsBeamline/RBend3D.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/RBend3D.h mode change 100755 => 100644 src/Classic/AbsBeamline/RFCavity.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/RFCavity.h mode change 100755 => 100644 src/Classic/AbsBeamline/RFQuadrupole.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/RFQuadrupole.h mode change 100755 => 100644 src/Classic/AbsBeamline/Ring.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Ring.h mode change 100755 => 100644 src/Classic/AbsBeamline/SBend.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/SBend.h mode change 100755 => 100644 src/Classic/AbsBeamline/SBend3D.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/SBend3D.h mode change 100755 => 100644 src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/ScalingFFAGMagnet.h mode change 100755 => 100644 src/Classic/AbsBeamline/SectorFieldMapComponent.h mode change 100755 => 100644 src/Classic/AbsBeamline/Separator.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Separator.h mode change 100755 => 100644 src/Classic/AbsBeamline/Septum.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Septum.h mode change 100755 => 100644 src/Classic/AbsBeamline/Solenoid.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Solenoid.h mode change 100755 => 100644 src/Classic/AbsBeamline/Source.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Source.h mode change 100755 => 100644 src/Classic/AbsBeamline/SpecificElementVisitor.h mode change 100755 => 100644 src/Classic/AbsBeamline/Stripper.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/Stripper.h mode change 100755 => 100644 src/Classic/AbsBeamline/TravelingWave.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/TravelingWave.h mode change 100755 => 100644 src/Classic/AbsBeamline/VariableRFCavity.cpp mode change 100755 => 100644 src/Classic/AbsBeamline/VariableRFCavity.h mode change 100755 => 100644 src/Classic/AbsBeamline/multipole_t.tex mode change 100755 => 100644 src/Classic/Algebra/Array1D.h mode change 100755 => 100644 src/Classic/Algebra/Array2D.h mode change 100755 => 100644 src/Classic/Algebra/CMakeLists.txt mode change 100755 => 100644 src/Classic/Algebra/ComplexEigen.cpp mode change 100755 => 100644 src/Classic/Algebra/ComplexEigen.h mode change 100755 => 100644 src/Classic/Algebra/DoubleEigen.cpp mode change 100755 => 100644 src/Classic/Algebra/DoubleEigen.h mode change 100755 => 100644 src/Classic/Algebra/DynamicFixedPoint.cpp mode change 100755 => 100644 src/Classic/Algebra/DynamicFixedPoint.h mode change 100755 => 100644 src/Classic/Algebra/LUMatrix.h mode change 100755 => 100644 src/Classic/Algebra/LieMap.h mode change 100755 => 100644 src/Classic/Algebra/Matrix.h mode change 100755 => 100644 src/Classic/Algebra/NormalForm.cpp mode change 100755 => 100644 src/Classic/Algebra/NormalForm.h mode change 100755 => 100644 src/Classic/Algebra/SliceIterator.h mode change 100755 => 100644 src/Classic/Algebra/StaticFixedPoint.cpp mode change 100755 => 100644 src/Classic/Algebra/StaticFixedPoint.h mode change 100755 => 100644 src/Classic/Algebra/Tps.cpp mode change 100755 => 100644 src/Classic/Algebra/Tps.h mode change 100755 => 100644 src/Classic/Algebra/TpsComplex.cpp mode change 100755 => 100644 src/Classic/Algebra/TpsData.cpp mode change 100755 => 100644 src/Classic/Algebra/TpsData.h mode change 100755 => 100644 src/Classic/Algebra/TpsDouble.cpp mode change 100755 => 100644 src/Classic/Algebra/TpsMath.h mode change 100755 => 100644 src/Classic/Algebra/TpsMonomial.cpp mode change 100755 => 100644 src/Classic/Algebra/TpsMonomial.h mode change 100755 => 100644 src/Classic/Algebra/TpsSubstitution.h mode change 100755 => 100644 src/Classic/Algebra/TpsTps.cpp mode change 100755 => 100644 src/Classic/Algebra/Vector.h mode change 100755 => 100644 src/Classic/Algebra/Vps.cpp mode change 100755 => 100644 src/Classic/Algebra/Vps.h mode change 100755 => 100644 src/Classic/Algebra/VpsInvMap.h mode change 100755 => 100644 src/Classic/Algebra/VpsMap.h mode change 100755 => 100644 src/Classic/Algorithms/AbstractMapper.cpp mode change 100755 => 100644 src/Classic/Algorithms/AbstractMapper.h mode change 100755 => 100644 src/Classic/Algorithms/AbstractTimeDependence.cpp mode change 100755 => 100644 src/Classic/Algorithms/AbstractTimeDependence.h mode change 100755 => 100644 src/Classic/Algorithms/AbstractTracker.cpp mode change 100755 => 100644 src/Classic/Algorithms/AbstractTracker.h mode change 100755 => 100644 src/Classic/Algorithms/AmrPartBunch.cpp mode change 100755 => 100644 src/Classic/Algorithms/AmrPartBunch.h mode change 100755 => 100644 src/Classic/Algorithms/CMakeLists.txt mode change 100755 => 100644 src/Classic/Algorithms/CoordinateSystemTrafo.cpp mode change 100755 => 100644 src/Classic/Algorithms/CoordinateSystemTrafo.h mode change 100755 => 100644 src/Classic/Algorithms/DefaultVisitor.cpp mode change 100755 => 100644 src/Classic/Algorithms/DefaultVisitor.h mode change 100755 => 100644 src/Classic/Algorithms/Flagger.cpp mode change 100755 => 100644 src/Classic/Algorithms/Flagger.h mode change 100755 => 100644 src/Classic/Algorithms/IdealMapper.cpp mode change 100755 => 100644 src/Classic/Algorithms/IdealMapper.h mode change 100755 => 100644 src/Classic/Algorithms/LinearMapper.cpp mode change 100755 => 100644 src/Classic/Algorithms/LinearMapper.h mode change 100755 => 100644 src/Classic/Algorithms/ListElem.h mode change 100755 => 100644 src/Classic/Algorithms/MapIntegrator.cpp mode change 100755 => 100644 src/Classic/Algorithms/MapIntegrator.h mode change 100755 => 100644 src/Classic/Algorithms/Mapper.cpp mode change 100755 => 100644 src/Classic/Algorithms/Mapper.h mode change 100755 => 100644 src/Classic/Algorithms/OpalParticle.cpp mode change 100755 => 100644 src/Classic/Algorithms/OpalParticle.h mode change 100755 => 100644 src/Classic/Algorithms/OrbitTracker.cpp mode change 100755 => 100644 src/Classic/Algorithms/OrbitTracker.h mode change 100755 => 100644 src/Classic/Algorithms/PBunchDefs.h mode change 100755 => 100644 src/Classic/Algorithms/PartBins.cpp mode change 100755 => 100644 src/Classic/Algorithms/PartBins.h mode change 100755 => 100644 src/Classic/Algorithms/PartBinsCyc.cpp mode change 100755 => 100644 src/Classic/Algorithms/PartBinsCyc.h mode change 100755 => 100644 src/Classic/Algorithms/PartBunch.cpp mode change 100755 => 100644 src/Classic/Algorithms/PartBunch.h mode change 100755 => 100644 src/Classic/Algorithms/PartBunchBase.h mode change 100755 => 100644 src/Classic/Algorithms/PartBunchBase.hpp mode change 100755 => 100644 src/Classic/Algorithms/PartData.cpp mode change 100755 => 100644 src/Classic/Algorithms/PartData.h mode change 100755 => 100644 src/Classic/Algorithms/PolynomialTimeDependence.cpp mode change 100755 => 100644 src/Classic/Algorithms/PolynomialTimeDependence.h mode change 100755 => 100644 src/Classic/Algorithms/Quaternion.cpp mode change 100755 => 100644 src/Classic/Algorithms/Quaternion.h mode change 100755 => 100644 src/Classic/Algorithms/Surveyor.cpp mode change 100755 => 100644 src/Classic/Algorithms/Surveyor.h mode change 100755 => 100644 src/Classic/Algorithms/ThinMapper.cpp mode change 100755 => 100644 src/Classic/Algorithms/ThinMapper.h mode change 100755 => 100644 src/Classic/Algorithms/ThinTracker.cpp mode change 100755 => 100644 src/Classic/Algorithms/ThinTracker.h mode change 100755 => 100644 src/Classic/Algorithms/TrackIntegrator.cpp mode change 100755 => 100644 src/Classic/Algorithms/TrackIntegrator.h mode change 100755 => 100644 src/Classic/Algorithms/Tracker.cpp mode change 100755 => 100644 src/Classic/Algorithms/Tracker.h mode change 100755 => 100644 src/Classic/Algorithms/Vektor.h mode change 100755 => 100644 src/Classic/Algorithms/rbendmap.h mode change 100755 => 100644 src/Classic/BeamlineCore/BeamBeamRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/BeamBeamRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/CMakeLists.txt mode change 100755 => 100644 src/Classic/BeamlineCore/CollimatorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/CollimatorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/CorrectorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/CorrectorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronValleyRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/CyclotronValleyRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/DegraderRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/DegraderRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/DriftRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/DriftRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/MarkerRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/MarkerRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/MonitorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/MonitorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/MultipoleRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/MultipoleRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/Octupole.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/Octupole.h mode change 100755 => 100644 src/Classic/BeamlineCore/ParallelPlateRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/ParallelPlateRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/PatchRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/PatchRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/ProbeRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/ProbeRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/Quadrupole.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/Quadrupole.h mode change 100755 => 100644 src/Classic/BeamlineCore/RBendRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/RBendRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/RFCavityRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/RFCavityRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/SBendRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SBendRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/SeparatorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SeparatorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/SeptumRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SeptumRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/Sextupole.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/Sextupole.h mode change 100755 => 100644 src/Classic/BeamlineCore/SingleMultipole.h mode change 100755 => 100644 src/Classic/BeamlineCore/SkewOctupole.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SkewOctupole.h mode change 100755 => 100644 src/Classic/BeamlineCore/SkewQuadrupole.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SkewQuadrupole.h mode change 100755 => 100644 src/Classic/BeamlineCore/SkewSextupole.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SkewSextupole.h mode change 100755 => 100644 src/Classic/BeamlineCore/SolenoidRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SolenoidRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/SourceRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/SourceRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/StripperRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/StripperRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/TravelingWaveRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/TravelingWaveRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/XCorrectorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/XCorrectorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/XMonitorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/XMonitorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/YCorrectorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/YCorrectorRep.h mode change 100755 => 100644 src/Classic/BeamlineCore/YMonitorRep.cpp mode change 100755 => 100644 src/Classic/BeamlineCore/YMonitorRep.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/CMakeLists.txt mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3D.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3D.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3DGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/Euclid3DGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/Geometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/Geometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/Matrix3D.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/Matrix3D.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/NullGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/NullGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/OffsetGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/OffsetGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/PlanarArcGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/PlanarArcGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/RBendGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/RBendGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/Rotation3D.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/Rotation3D.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/SRotatedGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/SRotatedGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/StraightGeometry.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/StraightGeometry.h mode change 100755 => 100644 src/Classic/BeamlineGeometry/Vector3D.cpp mode change 100755 => 100644 src/Classic/BeamlineGeometry/Vector3D.h mode change 100755 => 100644 src/Classic/Beamlines/Beamline.cpp mode change 100755 => 100644 src/Classic/Beamlines/Beamline.h mode change 100755 => 100644 src/Classic/Beamlines/BeamlineGeometry.cpp mode change 100755 => 100644 src/Classic/Beamlines/BeamlineGeometry.h mode change 100755 => 100644 src/Classic/Beamlines/CMakeLists.txt mode change 100755 => 100644 src/Classic/Beamlines/ElmPtr.cpp mode change 100755 => 100644 src/Classic/Beamlines/ElmPtr.h mode change 100755 => 100644 src/Classic/Beamlines/FlaggedBeamline.cpp mode change 100755 => 100644 src/Classic/Beamlines/FlaggedBeamline.h mode change 100755 => 100644 src/Classic/Beamlines/FlaggedElmPtr.cpp mode change 100755 => 100644 src/Classic/Beamlines/FlaggedElmPtr.h mode change 100755 => 100644 src/Classic/Beamlines/SimpleBeamline.cpp mode change 100755 => 100644 src/Classic/Beamlines/SimpleBeamline.h mode change 100755 => 100644 src/Classic/Beamlines/TBeamline.h mode change 100755 => 100644 src/Classic/CMakeLists.txt mode change 100755 => 100644 src/Classic/Channels/CMakeLists.txt mode change 100755 => 100644 src/Classic/Channels/Channel.cpp mode change 100755 => 100644 src/Classic/Channels/Channel.h mode change 100755 => 100644 src/Classic/Channels/ConstChannel.cpp mode change 100755 => 100644 src/Classic/Channels/ConstChannel.h mode change 100755 => 100644 src/Classic/Channels/DirectChannel.h mode change 100755 => 100644 src/Classic/Channels/IndexedChannel.h mode change 100755 => 100644 src/Classic/Channels/IndirectChannel.h mode change 100755 => 100644 src/Classic/ComponentWrappers/CMakeLists.txt mode change 100755 => 100644 src/Classic/ComponentWrappers/CorrectorWrapper.cpp mode change 100755 => 100644 src/Classic/ComponentWrappers/CorrectorWrapper.h mode change 100755 => 100644 src/Classic/ComponentWrappers/CyclotronWrapper.cpp mode change 100755 => 100644 src/Classic/ComponentWrappers/CyclotronWrapper.h mode change 100755 => 100644 src/Classic/ComponentWrappers/MultipoleWrapper.cpp mode change 100755 => 100644 src/Classic/ComponentWrappers/MultipoleWrapper.h mode change 100755 => 100644 src/Classic/ComponentWrappers/RBendWrapper.cpp mode change 100755 => 100644 src/Classic/ComponentWrappers/RBendWrapper.h mode change 100755 => 100644 src/Classic/ComponentWrappers/SBendWrapper.cpp mode change 100755 => 100644 src/Classic/ComponentWrappers/SBendWrapper.h mode change 100755 => 100644 src/Classic/Construction/CMakeLists.txt mode change 100755 => 100644 src/Classic/Construction/ElementFactory.cpp mode change 100755 => 100644 src/Classic/Construction/ElementFactory.h mode change 100755 => 100644 src/Classic/Construction/Factory.cpp mode change 100755 => 100644 src/Classic/Construction/Factory.h mode change 100755 => 100644 src/Classic/DipoleFieldTest.cpp mode change 100755 => 100644 src/Classic/Fields/AcceleratingField.h mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic.h mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic_fast.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1DDynamic_fast.h mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic.h mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic_fast.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1DElectroStatic_fast.h mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic.h mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic_fast.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1DMagnetoStatic_fast.h mode change 100755 => 100644 src/Classic/Fields/Astra1D_fast.cpp mode change 100755 => 100644 src/Classic/Fields/Astra1D_fast.h mode change 100755 => 100644 src/Classic/Fields/BDipoleField.cpp mode change 100755 => 100644 src/Classic/Fields/BDipoleField.h mode change 100755 => 100644 src/Classic/Fields/BMultipoleField.cpp mode change 100755 => 100644 src/Classic/Fields/BMultipoleField.h mode change 100755 => 100644 src/Classic/Fields/BSingleMultipoleField.h mode change 100755 => 100644 src/Classic/Fields/CMakeLists.txt mode change 100755 => 100644 src/Classic/Fields/ConstBField.cpp mode change 100755 => 100644 src/Classic/Fields/ConstBField.h mode change 100755 => 100644 src/Classic/Fields/ConstBzField.cpp mode change 100755 => 100644 src/Classic/Fields/ConstBzField.h mode change 100755 => 100644 src/Classic/Fields/ConstEField.cpp mode change 100755 => 100644 src/Classic/Fields/ConstEField.h mode change 100755 => 100644 src/Classic/Fields/ConstEzField.cpp mode change 100755 => 100644 src/Classic/Fields/ConstEzField.h mode change 100755 => 100644 src/Classic/Fields/EDipoleField.cpp mode change 100755 => 100644 src/Classic/Fields/EDipoleField.h mode change 100755 => 100644 src/Classic/Fields/EMField.cpp mode change 100755 => 100644 src/Classic/Fields/EMField.h mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic.h mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic_fast.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DDynamic_fast.h mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic.h mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic_fast.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DElectroStatic_fast.h mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic.h mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic_fast.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DMagnetoStatic_fast.h mode change 100755 => 100644 src/Classic/Fields/FM1DProfile1.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DProfile1.h mode change 100755 => 100644 src/Classic/Fields/FM1DProfile2.cpp mode change 100755 => 100644 src/Classic/Fields/FM1DProfile2.h mode change 100755 => 100644 src/Classic/Fields/FM2DDynamic.cpp mode change 100755 => 100644 src/Classic/Fields/FM2DDynamic.h mode change 100755 => 100644 src/Classic/Fields/FM2DElectroStatic.cpp mode change 100755 => 100644 src/Classic/Fields/FM2DElectroStatic.h mode change 100755 => 100644 src/Classic/Fields/FM2DMagnetoStatic.cpp mode change 100755 => 100644 src/Classic/Fields/FM2DMagnetoStatic.h mode change 100755 => 100644 src/Classic/Fields/FM3DDynamic.cpp mode change 100755 => 100644 src/Classic/Fields/FM3DDynamic.h mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block.cpp mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block.h mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block_nonscale.cpp mode change 100755 => 100644 src/Classic/Fields/FM3DH5Block_nonscale.h mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStatic.cpp mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStatic.h mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticExtended.cpp mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticExtended.h mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticH5Block.cpp mode change 100755 => 100644 src/Classic/Fields/FM3DMagnetoStaticH5Block.h mode change 100755 => 100644 src/Classic/Fields/FMDummy.cpp mode change 100755 => 100644 src/Classic/Fields/FMDummy.h mode change 100755 => 100644 src/Classic/Fields/Fieldmap.cpp mode change 100755 => 100644 src/Classic/Fields/Fieldmap.h mode change 100755 => 100644 src/Classic/Fields/Fieldmap.hpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/CMakeLists.txt mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/MMatrix.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/MMatrix.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/MVector.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/MVector.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/Mesh-inl.icc mode change 100755 => 100644 src/Classic/Fields/Interpolation/Mesh.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/Mesh.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/NDGrid.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/NDGrid.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/PPSolveFactory.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/PPSolveFactory.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialCoefficient.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialCoefficient.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialPatch.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/PolynomialPatch.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/SolveFactory.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/SolveFactory.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/SquarePolynomialVector.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/SquarePolynomialVector.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/ThreeDGrid.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/ThreeDGrid.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/TriLinearInterpolator.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/TriLinearInterpolator.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/TwoDGrid.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/TwoDGrid.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/VectorMap.cpp mode change 100755 => 100644 src/Classic/Fields/Interpolation/VectorMap.h mode change 100755 => 100644 src/Classic/Fields/Interpolation/polynomial_solve_with_smoothing.tex mode change 100755 => 100644 src/Classic/Fields/NullField.cpp mode change 100755 => 100644 src/Classic/Fields/NullField.h mode change 100755 => 100644 src/Classic/Fields/OscillatingField.h mode change 100755 => 100644 src/Classic/Fields/SectorField.cpp mode change 100755 => 100644 src/Classic/Fields/SectorField.h mode change 100755 => 100644 src/Classic/Fields/SectorMagneticFieldMap.cpp mode change 100755 => 100644 src/Classic/Fields/SectorMagneticFieldMap.h mode change 100755 => 100644 src/Classic/Fields/StaticElectricField.cpp mode change 100755 => 100644 src/Classic/Fields/StaticElectricField.h mode change 100755 => 100644 src/Classic/Fields/StaticMagneticField.cpp mode change 100755 => 100644 src/Classic/Fields/StaticMagneticField.h mode change 100755 => 100644 src/Classic/Filters/CMakeLists.txt mode change 100755 => 100644 src/Classic/Filters/Filter.h mode change 100755 => 100644 src/Classic/Filters/Filters.h mode change 100755 => 100644 src/Classic/Filters/FixedFFTLowPass.cpp mode change 100755 => 100644 src/Classic/Filters/FixedFFTLowPass.h mode change 100755 => 100644 src/Classic/Filters/RelativeFFTLowPass.cpp mode change 100755 => 100644 src/Classic/Filters/RelativeFFTLowPass.h mode change 100755 => 100644 src/Classic/Filters/SavitzkyGolay.cpp mode change 100755 => 100644 src/Classic/Filters/SavitzkyGolay.h mode change 100755 => 100644 src/Classic/Filters/Stencil.cpp mode change 100755 => 100644 src/Classic/Filters/Stencil.h mode change 100755 => 100644 src/Classic/FixedAlgebra/CMakeLists.txt mode change 100755 => 100644 src/Classic/FixedAlgebra/DragtFinnMap.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/DragtFinnMap.h mode change 100755 => 100644 src/Classic/FixedAlgebra/DragtFinnNormalForm.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FArray1D.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FArray2D.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FComplexEigen.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FDoubleEigen.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FDynamicFP.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FLUMatrix.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FLieGenerator.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/FLieGenerator.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FMatrix.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FMonomial.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FNormalForm.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FSlice.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FStaticFP.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FTps.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/FTps.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FTpsData.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FTpsMath.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FVector.h mode change 100755 => 100644 src/Classic/FixedAlgebra/FVps.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/FVps.h mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearFun.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearFun.h mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearMap.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearMap.h mode change 100755 => 100644 src/Classic/FixedAlgebra/LinearMath.h mode change 100755 => 100644 src/Classic/FixedAlgebra/Taylor.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/Taylor.h mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportFun.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportFun.h mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportMap.cpp mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportMap.h mode change 100755 => 100644 src/Classic/FixedAlgebra/TransportMath.h mode change 100755 => 100644 src/Classic/Main.cpp mode change 100755 => 100644 src/Classic/MemoryManagement/CMakeLists.txt mode change 100755 => 100644 src/Classic/MemoryManagement/OwnPtr.h mode change 100755 => 100644 src/Classic/MemoryManagement/Pointer.h mode change 100755 => 100644 src/Classic/MemoryManagement/RCObject.h mode change 100755 => 100644 src/Classic/Parser/AbsFileStream.cpp mode change 100755 => 100644 src/Classic/Parser/AbsFileStream.h mode change 100755 => 100644 src/Classic/Parser/CMakeLists.txt mode change 100755 => 100644 src/Classic/Parser/FileStream.cpp mode change 100755 => 100644 src/Classic/Parser/FileStream.h mode change 100755 => 100644 src/Classic/Parser/Parser.h mode change 100755 => 100644 src/Classic/Parser/SimpleStatement.cpp mode change 100755 => 100644 src/Classic/Parser/SimpleStatement.h mode change 100755 => 100644 src/Classic/Parser/Statement.cpp mode change 100755 => 100644 src/Classic/Parser/Statement.h mode change 100755 => 100644 src/Classic/Parser/StringStream.cpp mode change 100755 => 100644 src/Classic/Parser/StringStream.h mode change 100755 => 100644 src/Classic/Parser/TerminalStream.cpp mode change 100755 => 100644 src/Classic/Parser/TerminalStream.h mode change 100755 => 100644 src/Classic/Parser/Token.cpp mode change 100755 => 100644 src/Classic/Parser/Token.h mode change 100755 => 100644 src/Classic/Parser/TokenStream.cpp mode change 100755 => 100644 src/Classic/Parser/TokenStream.h mode change 100755 => 100644 src/Classic/Physics/CMakeLists.txt mode change 100755 => 100644 src/Classic/Physics/Physics.h mode change 100755 => 100644 src/Classic/ReadMe mode change 100755 => 100644 src/Classic/Solvers/CMakeLists.txt mode change 100755 => 100644 src/Classic/Solvers/CSRIGFWakeFunction.cpp mode change 100755 => 100644 src/Classic/Solvers/CSRIGFWakeFunction.hh mode change 100755 => 100644 src/Classic/Solvers/CSRWakeFunction.cpp mode change 100755 => 100644 src/Classic/Solvers/CSRWakeFunction.hh mode change 100755 => 100644 src/Classic/Solvers/CollimatorPhysics.cpp mode change 100755 => 100644 src/Classic/Solvers/CollimatorPhysics.hh mode change 100755 => 100644 src/Classic/Solvers/GreenWakeFunction.cpp mode change 100755 => 100644 src/Classic/Solvers/GreenWakeFunction.hh mode change 100755 => 100644 src/Classic/Solvers/ParticleMatterInteractionHandler.hh mode change 100755 => 100644 src/Classic/Solvers/TestLambda.h mode change 100755 => 100644 src/Classic/Solvers/WakeFunction.hh mode change 100755 => 100644 src/Classic/Structure/CMakeLists.txt mode change 100755 => 100644 src/Classic/Structure/LossDataSink.cpp mode change 100755 => 100644 src/Classic/Structure/LossDataSink.h mode change 100755 => 100644 src/Classic/Structure/MeshGenerator.cpp mode change 100755 => 100644 src/Classic/Structure/MeshGenerator.h mode change 100755 => 100644 src/Classic/Structure/PeakFinder.cpp mode change 100755 => 100644 src/Classic/Structure/PeakFinder.h mode change 100755 => 100644 src/Classic/Utilities/ArithmeticError.cpp mode change 100755 => 100644 src/Classic/Utilities/ArithmeticError.h mode change 100755 => 100644 src/Classic/Utilities/AttributeError.cpp mode change 100755 => 100644 src/Classic/Utilities/AttributeError.h mode change 100755 => 100644 src/Classic/Utilities/CLRangeError.cpp mode change 100755 => 100644 src/Classic/Utilities/CLRangeError.h mode change 100755 => 100644 src/Classic/Utilities/CMakeLists.txt mode change 100755 => 100644 src/Classic/Utilities/ClassicException.cpp mode change 100755 => 100644 src/Classic/Utilities/ClassicException.h mode change 100755 => 100644 src/Classic/Utilities/ClassicField.cpp mode change 100755 => 100644 src/Classic/Utilities/ClassicField.h mode change 100755 => 100644 src/Classic/Utilities/ClassicRandom.cpp mode change 100755 => 100644 src/Classic/Utilities/ClassicRandom.h mode change 100755 => 100644 src/Classic/Utilities/ComplexErrorFun.cpp mode change 100755 => 100644 src/Classic/Utilities/ComplexErrorFun.h mode change 100755 => 100644 src/Classic/Utilities/ConvergenceError.cpp mode change 100755 => 100644 src/Classic/Utilities/ConvergenceError.h mode change 100755 => 100644 src/Classic/Utilities/DivideError.cpp mode change 100755 => 100644 src/Classic/Utilities/DivideError.h mode change 100755 => 100644 src/Classic/Utilities/DomainError.cpp mode change 100755 => 100644 src/Classic/Utilities/DomainError.h mode change 100755 => 100644 src/Classic/Utilities/EigenvalueError.cpp mode change 100755 => 100644 src/Classic/Utilities/EigenvalueError.h mode change 100755 => 100644 src/Classic/Utilities/FormatError.cpp mode change 100755 => 100644 src/Classic/Utilities/FormatError.h mode change 100755 => 100644 src/Classic/Utilities/Gauss.cpp mode change 100755 => 100644 src/Classic/Utilities/Gauss.h mode change 100755 => 100644 src/Classic/Utilities/GeneralClassicException.cpp mode change 100755 => 100644 src/Classic/Utilities/GeneralClassicException.h mode change 100755 => 100644 src/Classic/Utilities/InverseGauss.cpp mode change 100755 => 100644 src/Classic/Utilities/InverseGauss.h mode change 100755 => 100644 src/Classic/Utilities/LogicalError.cpp mode change 100755 => 100644 src/Classic/Utilities/LogicalError.h mode change 100755 => 100644 src/Classic/Utilities/NormalFormError.cpp mode change 100755 => 100644 src/Classic/Utilities/NormalFormError.h mode change 100755 => 100644 src/Classic/Utilities/OptionTypes.h mode change 100755 => 100644 src/Classic/Utilities/Options.cpp mode change 100755 => 100644 src/Classic/Utilities/Options.h mode change 100755 => 100644 src/Classic/Utilities/OverflowError.cpp mode change 100755 => 100644 src/Classic/Utilities/OverflowError.h mode change 100755 => 100644 src/Classic/Utilities/ParseError.cpp mode change 100755 => 100644 src/Classic/Utilities/ParseError.h mode change 100755 => 100644 src/Classic/Utilities/RingSection.cpp mode change 100755 => 100644 src/Classic/Utilities/RingSection.h mode change 100755 => 100644 src/Classic/Utilities/SingularMatrixError.cpp mode change 100755 => 100644 src/Classic/Utilities/SingularMatrixError.h mode change 100755 => 100644 src/Classic/Utilities/SizeError.cpp mode change 100755 => 100644 src/Classic/Utilities/SizeError.h mode change 100755 => 100644 src/Classic/Utilities/SwitcherError.cpp mode change 100755 => 100644 src/Classic/Utilities/SwitcherError.h mode change 100755 => 100644 src/Classic/Utilities/Util.cpp mode change 100755 => 100644 src/Classic/Utilities/Util.h mode change 100755 => 100644 src/Classic/autogen-gele.sh mode change 100755 => 100644 src/Classic/autogen-palu.sh mode change 100755 => 100644 src/Classic/autogen-regression.sh mode change 100755 => 100644 src/Classic/autogen.sh mode change 100755 => 100644 src/Classic/configure.ac mode change 100755 => 100644 src/Copyright.readme mode change 100755 => 100644 src/Distribution/CMakeLists.txt mode change 100755 => 100644 src/Distribution/ClosedOrbitFinder.h mode change 100755 => 100644 src/Distribution/Distribution.cpp mode change 100755 => 100644 src/Distribution/Distribution.h mode change 100755 => 100644 src/Distribution/Harmonics.h mode change 100755 => 100644 src/Distribution/LaserProfile.cpp mode change 100755 => 100644 src/Distribution/LaserProfile.h mode change 100755 => 100644 src/Distribution/MagneticField.cpp mode change 100755 => 100644 src/Distribution/MagneticField.h mode change 100755 => 100644 src/Distribution/MapGenerator.h mode change 100755 => 100644 src/Distribution/SigmaGenerator.h mode change 100755 => 100644 src/Distribution/halton1d_sequence.cpp mode change 100755 => 100644 src/Distribution/halton1d_sequence.hh mode change 100755 => 100644 src/Distribution/matrix_vector_operation.h mode change 100755 => 100644 src/Distribution/rdm.h mode change 100755 => 100644 src/Editor/CMakeLists.txt mode change 100755 => 100644 src/Editor/Edit.cpp mode change 100755 => 100644 src/Editor/Edit.h mode change 100755 => 100644 src/Editor/EditCmd.cpp mode change 100755 => 100644 src/Editor/EditCmd.h mode change 100755 => 100644 src/Editor/EditCycle.cpp mode change 100755 => 100644 src/Editor/EditCycle.h mode change 100755 => 100644 src/Editor/EditEnd.cpp mode change 100755 => 100644 src/Editor/EditEnd.h mode change 100755 => 100644 src/Editor/EditFlatten.cpp mode change 100755 => 100644 src/Editor/EditFlatten.h mode change 100755 => 100644 src/Editor/EditInstall.cpp mode change 100755 => 100644 src/Editor/EditInstall.h mode change 100755 => 100644 src/Editor/EditMove.cpp mode change 100755 => 100644 src/Editor/EditMove.h mode change 100755 => 100644 src/Editor/EditParser.cpp mode change 100755 => 100644 src/Editor/EditParser.h mode change 100755 => 100644 src/Editor/EditReflect.cpp mode change 100755 => 100644 src/Editor/EditReflect.h mode change 100755 => 100644 src/Editor/EditRemove.cpp mode change 100755 => 100644 src/Editor/EditRemove.h mode change 100755 => 100644 src/Editor/EditReplace.cpp mode change 100755 => 100644 src/Editor/EditReplace.h mode change 100755 => 100644 src/Editor/EditSelect.cpp mode change 100755 => 100644 src/Editor/EditSelect.h mode change 100755 => 100644 src/Elements/AttCell.cpp mode change 100755 => 100644 src/Elements/AttCell.h mode change 100755 => 100644 src/Elements/CMakeLists.txt mode change 100755 => 100644 src/Elements/OpalBeamBeam.cpp mode change 100755 => 100644 src/Elements/OpalBeamBeam.h mode change 100755 => 100644 src/Elements/OpalBeamBeam3D.cpp mode change 100755 => 100644 src/Elements/OpalBeamBeam3D.h mode change 100755 => 100644 src/Elements/OpalBeamline.cpp mode change 100755 => 100644 src/Elements/OpalBeamline.h mode change 100755 => 100644 src/Elements/OpalBend.cpp mode change 100755 => 100644 src/Elements/OpalBend.h mode change 100755 => 100644 src/Elements/OpalCCollimator.cpp mode change 100755 => 100644 src/Elements/OpalCCollimator.h mode change 100755 => 100644 src/Elements/OpalCavity.cpp mode change 100755 => 100644 src/Elements/OpalCavity.h mode change 100755 => 100644 src/Elements/OpalCyclotron.cpp mode change 100755 => 100644 src/Elements/OpalCyclotron.h mode change 100755 => 100644 src/Elements/OpalCyclotronValley.cpp mode change 100755 => 100644 src/Elements/OpalCyclotronValley.h mode change 100755 => 100644 src/Elements/OpalDegrader.cpp mode change 100755 => 100644 src/Elements/OpalDegrader.h mode change 100755 => 100644 src/Elements/OpalDrift.cpp mode change 100755 => 100644 src/Elements/OpalDrift.h mode change 100755 => 100644 src/Elements/OpalECollimator.cpp mode change 100755 => 100644 src/Elements/OpalECollimator.h mode change 100755 => 100644 src/Elements/OpalElement.cpp mode change 100755 => 100644 src/Elements/OpalElement.h mode change 100755 => 100644 src/Elements/OpalHKicker.cpp mode change 100755 => 100644 src/Elements/OpalHKicker.h mode change 100755 => 100644 src/Elements/OpalHMonitor.cpp mode change 100755 => 100644 src/Elements/OpalHMonitor.h mode change 100755 => 100644 src/Elements/OpalInstrument.cpp mode change 100755 => 100644 src/Elements/OpalInstrument.h mode change 100755 => 100644 src/Elements/OpalKicker.cpp mode change 100755 => 100644 src/Elements/OpalKicker.h mode change 100755 => 100644 src/Elements/OpalMarker.cpp mode change 100755 => 100644 src/Elements/OpalMarker.h mode change 100755 => 100644 src/Elements/OpalMonitor.cpp mode change 100755 => 100644 src/Elements/OpalMonitor.h mode change 100755 => 100644 src/Elements/OpalMultipole.cpp mode change 100755 => 100644 src/Elements/OpalMultipole.h mode change 100755 => 100644 src/Elements/OpalMultipoleT.cpp mode change 100755 => 100644 src/Elements/OpalMultipoleT.h mode change 100755 => 100644 src/Elements/OpalOctupole.cpp mode change 100755 => 100644 src/Elements/OpalOctupole.h mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCartesianOffset.cpp mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCartesianOffset.h mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCylindricalOffset.cpp mode change 100755 => 100644 src/Elements/OpalOffset/OpalGlobalCylindricalOffset.h mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCartesianOffset.cpp mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCartesianOffset.h mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCylindricalOffset.cpp mode change 100755 => 100644 src/Elements/OpalOffset/OpalLocalCylindricalOffset.h mode change 100755 => 100644 src/Elements/OpalParallelPlate.cpp mode change 100755 => 100644 src/Elements/OpalParallelPlate.h mode change 100755 => 100644 src/Elements/OpalPatch.cpp mode change 100755 => 100644 src/Elements/OpalPatch.h mode change 100755 => 100644 src/Elements/OpalPepperPot.cpp mode change 100755 => 100644 src/Elements/OpalPepperPot.h mode change 100755 => 100644 src/Elements/OpalPolynomialTimeDependence.cpp mode change 100755 => 100644 src/Elements/OpalPolynomialTimeDependence.h mode change 100755 => 100644 src/Elements/OpalProbe.cpp mode change 100755 => 100644 src/Elements/OpalProbe.h mode change 100755 => 100644 src/Elements/OpalQuadrupole.cpp mode change 100755 => 100644 src/Elements/OpalQuadrupole.h mode change 100755 => 100644 src/Elements/OpalRBend.cpp mode change 100755 => 100644 src/Elements/OpalRBend.h mode change 100755 => 100644 src/Elements/OpalRBend3D.cpp mode change 100755 => 100644 src/Elements/OpalRBend3D.h mode change 100755 => 100644 src/Elements/OpalRCollimator.cpp mode change 100755 => 100644 src/Elements/OpalRCollimator.h mode change 100755 => 100644 src/Elements/OpalRingDefinition.cpp mode change 100755 => 100644 src/Elements/OpalRingDefinition.h mode change 100755 => 100644 src/Elements/OpalSBend.cpp mode change 100755 => 100644 src/Elements/OpalSBend.h mode change 100755 => 100644 src/Elements/OpalSBend3D.cpp mode change 100755 => 100644 src/Elements/OpalSBend3D.h mode change 100755 => 100644 src/Elements/OpalSRot.cpp mode change 100755 => 100644 src/Elements/OpalSRot.h mode change 100755 => 100644 src/Elements/OpalScalingFFAGMagnet.cpp mode change 100755 => 100644 src/Elements/OpalScalingFFAGMagnet.h mode change 100755 => 100644 src/Elements/OpalSeparator.cpp mode change 100755 => 100644 src/Elements/OpalSeparator.h mode change 100755 => 100644 src/Elements/OpalSeptum.cpp mode change 100755 => 100644 src/Elements/OpalSeptum.h mode change 100755 => 100644 src/Elements/OpalSextupole.cpp mode change 100755 => 100644 src/Elements/OpalSextupole.h mode change 100755 => 100644 src/Elements/OpalSlit.cpp mode change 100755 => 100644 src/Elements/OpalSlit.h mode change 100755 => 100644 src/Elements/OpalSolenoid.cpp mode change 100755 => 100644 src/Elements/OpalSolenoid.h mode change 100755 => 100644 src/Elements/OpalSource.cpp mode change 100755 => 100644 src/Elements/OpalSource.h mode change 100755 => 100644 src/Elements/OpalStripper.cpp mode change 100755 => 100644 src/Elements/OpalStripper.h mode change 100755 => 100644 src/Elements/OpalTravelingWave.cpp mode change 100755 => 100644 src/Elements/OpalTravelingWave.h mode change 100755 => 100644 src/Elements/OpalVKicker.cpp mode change 100755 => 100644 src/Elements/OpalVKicker.h mode change 100755 => 100644 src/Elements/OpalVMonitor.cpp mode change 100755 => 100644 src/Elements/OpalVMonitor.h mode change 100755 => 100644 src/Elements/OpalVariableRFCavity.cpp mode change 100755 => 100644 src/Elements/OpalVariableRFCavity.h mode change 100755 => 100644 src/Elements/OpalWire.cpp mode change 100755 => 100644 src/Elements/OpalWire.h mode change 100755 => 100644 src/Elements/OpalYRot.cpp mode change 100755 => 100644 src/Elements/OpalYRot.h mode change 100755 => 100644 src/Errors/AlignBase.cpp mode change 100755 => 100644 src/Errors/AlignBase.h mode change 100755 => 100644 src/Errors/AlignHandler.cpp mode change 100755 => 100644 src/Errors/AlignHandler.h mode change 100755 => 100644 src/Errors/AlignReader.cpp mode change 100755 => 100644 src/Errors/AlignReader.h mode change 100755 => 100644 src/Errors/AlignRemover.cpp mode change 100755 => 100644 src/Errors/AlignRemover.h mode change 100755 => 100644 src/Errors/AlignWriter.cpp mode change 100755 => 100644 src/Errors/AlignWriter.h mode change 100755 => 100644 src/Errors/CMakeLists.txt mode change 100755 => 100644 src/Errors/Error.cpp mode change 100755 => 100644 src/Errors/Error.h mode change 100755 => 100644 src/Errors/ErrorAlign.cpp mode change 100755 => 100644 src/Errors/ErrorAlign.h mode change 100755 => 100644 src/Errors/ErrorCmd.cpp mode change 100755 => 100644 src/Errors/ErrorCmd.h mode change 100755 => 100644 src/Errors/ErrorComp.cpp mode change 100755 => 100644 src/Errors/ErrorComp.h mode change 100755 => 100644 src/Errors/ErrorEnd.cpp mode change 100755 => 100644 src/Errors/ErrorEnd.h mode change 100755 => 100644 src/Errors/ErrorField.cpp mode change 100755 => 100644 src/Errors/ErrorField.h mode change 100755 => 100644 src/Errors/ErrorParser.cpp mode change 100755 => 100644 src/Errors/ErrorParser.h mode change 100755 => 100644 src/Errors/ErrorPrint.cpp mode change 100755 => 100644 src/Errors/ErrorPrint.h mode change 100755 => 100644 src/Errors/ErrorSave.cpp mode change 100755 => 100644 src/Errors/ErrorSave.h mode change 100755 => 100644 src/Errors/ErrorSelect.cpp mode change 100755 => 100644 src/Errors/ErrorSelect.h mode change 100755 => 100644 src/Errors/MPBase.cpp mode change 100755 => 100644 src/Errors/MPBase.h mode change 100755 => 100644 src/Errors/MPHandler.cpp mode change 100755 => 100644 src/Errors/MPHandler.h mode change 100755 => 100644 src/Errors/MPReader.cpp mode change 100755 => 100644 src/Errors/MPReader.h mode change 100755 => 100644 src/Errors/MPRemover.cpp mode change 100755 => 100644 src/Errors/MPRemover.h mode change 100755 => 100644 src/Errors/MPWriter.cpp mode change 100755 => 100644 src/Errors/MPWriter.h mode change 100755 => 100644 src/Expressions/AAutomatic.h mode change 100755 => 100644 src/Expressions/ABinary.h mode change 100755 => 100644 src/Expressions/AColumn.cpp mode change 100755 => 100644 src/Expressions/AColumn.h mode change 100755 => 100644 src/Expressions/ADeferred.h mode change 100755 => 100644 src/Expressions/AList.h mode change 100755 => 100644 src/Expressions/ARefAttr.h mode change 100755 => 100644 src/Expressions/ARefExpr.h mode change 100755 => 100644 src/Expressions/ARow.cpp mode change 100755 => 100644 src/Expressions/ARow.h mode change 100755 => 100644 src/Expressions/ASUnary.h mode change 100755 => 100644 src/Expressions/ATable.cpp mode change 100755 => 100644 src/Expressions/ATable.h mode change 100755 => 100644 src/Expressions/AUnary.h mode change 100755 => 100644 src/Expressions/AValue.h mode change 100755 => 100644 src/Expressions/CMakeLists.txt mode change 100755 => 100644 src/Expressions/Expressions.cpp mode change 100755 => 100644 src/Expressions/Expressions.h mode change 100755 => 100644 src/Expressions/Indexer.h mode change 100755 => 100644 src/Expressions/SAutomatic.h mode change 100755 => 100644 src/Expressions/SBinary.h mode change 100755 => 100644 src/Expressions/SCell.cpp mode change 100755 => 100644 src/Expressions/SCell.h mode change 100755 => 100644 src/Expressions/SConstant.h mode change 100755 => 100644 src/Expressions/SDeferred.h mode change 100755 => 100644 src/Expressions/SFunction.cpp mode change 100755 => 100644 src/Expressions/SFunction.h mode change 100755 => 100644 src/Expressions/SHash.cpp mode change 100755 => 100644 src/Expressions/SHash.h mode change 100755 => 100644 src/Expressions/SNull.h mode change 100755 => 100644 src/Expressions/SRefAttr.h mode change 100755 => 100644 src/Expressions/SRefExpr.h mode change 100755 => 100644 src/Expressions/SUnary.h mode change 100755 => 100644 src/Expressions/SValue.h mode change 100755 => 100644 src/Expressions/TFind.h mode change 100755 => 100644 src/Expressions/TFunction0.h mode change 100755 => 100644 src/Expressions/TFunction1.h mode change 100755 => 100644 src/Expressions/TFunction2.h mode change 100755 => 100644 src/Lines/CMakeLists.txt mode change 100755 => 100644 src/Lines/FlatWriter.cpp mode change 100755 => 100644 src/Lines/FlatWriter.h mode change 100755 => 100644 src/Lines/Line.cpp mode change 100755 => 100644 src/Lines/Line.h mode change 100755 => 100644 src/Lines/LineTemplate.cpp mode change 100755 => 100644 src/Lines/LineTemplate.h mode change 100755 => 100644 src/Lines/Replacer.cpp mode change 100755 => 100644 src/Lines/Replacer.h mode change 100755 => 100644 src/Lines/Sequence.cpp mode change 100755 => 100644 src/Lines/Sequence.h mode change 100755 => 100644 src/Lines/SequenceMember.cpp mode change 100755 => 100644 src/Lines/SequenceMember.h mode change 100755 => 100644 src/Lines/SequenceParser.cpp mode change 100755 => 100644 src/Lines/SequenceParser.h mode change 100755 => 100644 src/Lines/SequenceTemplate.cpp mode change 100755 => 100644 src/Lines/SequenceTemplate.h mode change 100755 => 100644 src/Main.cpp mode change 100755 => 100644 src/Match/AbstractFun.cpp mode change 100755 => 100644 src/Match/AbstractFun.h mode change 100755 => 100644 src/Match/AbstractVar.cpp mode change 100755 => 100644 src/Match/AbstractVar.h mode change 100755 => 100644 src/Match/CMakeLists.txt mode change 100755 => 100644 src/Match/ConcreteFun.cpp mode change 100755 => 100644 src/Match/ConcreteFun.h mode change 100755 => 100644 src/Match/ConcreteVar.cpp mode change 100755 => 100644 src/Match/ConcreteVar.h mode change 100755 => 100644 src/Match/ConstraintCmd.cpp mode change 100755 => 100644 src/Match/ConstraintCmd.h mode change 100755 => 100644 src/Match/LMDif.cpp mode change 100755 => 100644 src/Match/LMDif.h mode change 100755 => 100644 src/Match/Match.cpp mode change 100755 => 100644 src/Match/Match.h mode change 100755 => 100644 src/Match/MatchCmd.cpp mode change 100755 => 100644 src/Match/MatchCmd.h mode change 100755 => 100644 src/Match/MatchEnd.cpp mode change 100755 => 100644 src/Match/MatchEnd.h mode change 100755 => 100644 src/Match/MatchLimits.h mode change 100755 => 100644 src/Match/MatchOption.cpp mode change 100755 => 100644 src/Match/MatchOption.h mode change 100755 => 100644 src/Match/MatchParser.cpp mode change 100755 => 100644 src/Match/MatchParser.h mode change 100755 => 100644 src/Match/MatchState.h mode change 100755 => 100644 src/Match/Migrad.cpp mode change 100755 => 100644 src/Match/Migrad.h mode change 100755 => 100644 src/Match/Simplex.cpp mode change 100755 => 100644 src/Match/Simplex.h mode change 100755 => 100644 src/Match/VaryCmd.cpp mode change 100755 => 100644 src/Match/VaryCmd.h mode change 100755 => 100644 src/OpalConfigure/CMakeLists.txt mode change 100755 => 100644 src/OpalConfigure/Configure.cpp mode change 100755 => 100644 src/OpalConfigure/Configure.h mode change 100755 => 100644 src/OpalParser/CMakeLists.txt mode change 100755 => 100644 src/OpalParser/CompoundStatement.cpp mode change 100755 => 100644 src/OpalParser/CompoundStatement.h mode change 100755 => 100644 src/OpalParser/IfStatement.cpp mode change 100755 => 100644 src/OpalParser/IfStatement.h mode change 100755 => 100644 src/OpalParser/Macro.cpp mode change 100755 => 100644 src/OpalParser/Macro.h mode change 100755 => 100644 src/OpalParser/MacroCmd.cpp mode change 100755 => 100644 src/OpalParser/MacroCmd.h mode change 100755 => 100644 src/OpalParser/MacroStream.cpp mode change 100755 => 100644 src/OpalParser/MacroStream.h mode change 100755 => 100644 src/OpalParser/OpalParser.cpp mode change 100755 => 100644 src/OpalParser/OpalParser.h mode change 100755 => 100644 src/OpalParser/WhileStatement.cpp mode change 100755 => 100644 src/OpalParser/WhileStatement.h mode change 100755 => 100644 src/Optimize/CMakeLists.txt mode change 100755 => 100644 src/Optimize/Constraint.cpp mode change 100755 => 100644 src/Optimize/Constraint.h mode change 100755 => 100644 src/Optimize/DVar.cpp mode change 100755 => 100644 src/Optimize/DVar.h mode change 100755 => 100644 src/Optimize/Objective.cpp mode change 100755 => 100644 src/Optimize/Objective.h mode change 100755 => 100644 src/Optimize/OpalSimulation.cpp mode change 100755 => 100644 src/Optimize/OpalSimulation.h mode change 100755 => 100644 src/Optimize/OptimizeCmd.cpp mode change 100755 => 100644 src/Optimize/OptimizeCmd.h mode change 100755 => 100644 src/PhysicsActions/CMakeLists.txt mode change 100755 => 100644 src/PhysicsActions/Dynamic.cpp mode change 100755 => 100644 src/PhysicsActions/Dynamic.h mode change 100755 => 100644 src/PhysicsActions/MakeSequence.cpp mode change 100755 => 100644 src/PhysicsActions/MakeSequence.h mode change 100755 => 100644 src/PhysicsActions/SetIntegrator.cpp mode change 100755 => 100644 src/PhysicsActions/SetIntegrator.h mode change 100755 => 100644 src/PhysicsActions/Static.cpp mode change 100755 => 100644 src/PhysicsActions/Static.h mode change 100755 => 100644 src/Solvers/AMR_MG/Amesos2BottomSolver.h mode change 100755 => 100644 src/Solvers/AMR_MG/Amesos2BottomSolver.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/AmrBoundary.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrDirichletBoundary.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrInterpolater.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrLagrangeInterpolater.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrLagrangeInterpolater.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGrid.cpp mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGrid.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridCore.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridDefs.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridLevel.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrMultiGridLevel.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/AmrOpenBoundary.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPCInterpolater.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPCInterpolater.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPeriodicBoundary.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrPreconditioner.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrSmoother.cpp mode change 100755 => 100644 src/Solvers/AMR_MG/AmrSmoother.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrTrilinearInterpolater.h mode change 100755 => 100644 src/Solvers/AMR_MG/AmrTrilinearInterpolater.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/BelosBottomSolver.h mode change 100755 => 100644 src/Solvers/AMR_MG/BelosBottomSolver.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/BottomSolver.h mode change 100755 => 100644 src/Solvers/AMR_MG/CMakeLists.txt mode change 100755 => 100644 src/Solvers/AMR_MG/Ifpack2Preconditioner.h mode change 100755 => 100644 src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuBottomSolver.h mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuBottomSolver.hpp mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuPreconditioner.h mode change 100755 => 100644 src/Solvers/AMR_MG/MueLuPreconditioner.hpp mode change 100755 => 100644 src/Solvers/AmrPoissonSolver.h mode change 100755 => 100644 src/Solvers/ArbitraryDomain.cpp mode change 100755 => 100644 src/Solvers/ArbitraryDomain.h mode change 100755 => 100644 src/Solvers/BoxCornerDomain.cpp mode change 100755 => 100644 src/Solvers/BoxCornerDomain.h mode change 100755 => 100644 src/Solvers/BoxLibSolvers/FMGPoissonSolver.cpp mode change 100755 => 100644 src/Solvers/BoxLibSolvers/FMGPoissonSolver.h mode change 100755 => 100644 src/Solvers/CMakeLists.txt mode change 100755 => 100644 src/Solvers/EllipticDomain.cpp mode change 100755 => 100644 src/Solvers/EllipticDomain.h mode change 100755 => 100644 src/Solvers/FFTBoxPoissonSolver.cpp mode change 100755 => 100644 src/Solvers/FFTBoxPoissonSolver.h mode change 100755 => 100644 src/Solvers/FFTPoissonSolver.cpp mode change 100755 => 100644 src/Solvers/FFTPoissonSolver.h mode change 100755 => 100644 src/Solvers/IrregularDomain.h mode change 100755 => 100644 src/Solvers/MGPoissonSolver.cpp mode change 100755 => 100644 src/Solvers/MGPoissonSolver.h mode change 100755 => 100644 src/Solvers/P3MPoissonSolver.cpp mode change 100755 => 100644 src/Solvers/P3MPoissonSolver.h mode change 100755 => 100644 src/Solvers/PoissonSolver.h mode change 100755 => 100644 src/Solvers/RectangularDomain.cpp mode change 100755 => 100644 src/Solvers/RectangularDomain.h mode change 100755 => 100644 src/Solvers/TaperDomain.cpp mode change 100755 => 100644 src/Solvers/TaperDomain.h mode change 100755 => 100644 src/Steppers/BorisPusher.h mode change 100755 => 100644 src/Steppers/CMakeLists.txt mode change 100755 => 100644 src/Steppers/LF2.h mode change 100755 => 100644 src/Steppers/LF2.hpp mode change 100755 => 100644 src/Steppers/RK4.h mode change 100755 => 100644 src/Steppers/RK4.hpp mode change 100755 => 100644 src/Steppers/Stepper.h mode change 100755 => 100644 src/Steppers/Steppers.h mode change 100755 => 100644 src/Structure/Beam.cpp mode change 100755 => 100644 src/Structure/Beam.h mode change 100755 => 100644 src/Structure/BoundaryGeometry.cpp mode change 100755 => 100644 src/Structure/BoundaryGeometry.h mode change 100755 => 100644 src/Structure/CMakeLists.txt mode change 100755 => 100644 src/Structure/DataSink.cpp mode change 100755 => 100644 src/Structure/DataSink.h mode change 100755 => 100644 src/Structure/FieldSolver.cpp mode change 100755 => 100644 src/Structure/FieldSolver.h mode change 100755 => 100644 src/Structure/H5PartWrapper.cpp mode change 100755 => 100644 src/Structure/H5PartWrapper.h mode change 100755 => 100644 src/Structure/H5PartWrapperForPC.cpp mode change 100755 => 100644 src/Structure/H5PartWrapperForPC.h mode change 100755 => 100644 src/Structure/H5PartWrapperForPS.cpp mode change 100755 => 100644 src/Structure/H5PartWrapperForPS.h mode change 100755 => 100644 src/Structure/H5PartWrapperForPT.cpp mode change 100755 => 100644 src/Structure/H5PartWrapperForPT.h mode change 100755 => 100644 src/Structure/IpplInfoWrapper.cpp mode change 100755 => 100644 src/Structure/IpplInfoWrapper.h mode change 100755 => 100644 src/Structure/OpalInputInterpreter.cpp mode change 100755 => 100644 src/Structure/OpalInputInterpreter.h mode change 100755 => 100644 src/Structure/OpalWake.cpp mode change 100755 => 100644 src/Structure/OpalWake.h mode change 100755 => 100644 src/Structure/ParticleMatterInteraction.cpp mode change 100755 => 100644 src/Structure/ParticleMatterInteraction.h mode change 100755 => 100644 src/Structure/PriEmissionPhysics.cpp mode change 100755 => 100644 src/Structure/PriEmissionPhysics.h mode change 100755 => 100644 src/Structure/SecondaryEmissionPhysics.cpp mode change 100755 => 100644 src/Structure/SecondaryEmissionPhysics.h mode change 100755 => 100644 src/Structure/TracerParticles.cpp mode change 100755 => 100644 src/Structure/TracerParticles.hpp mode change 100755 => 100644 src/Tables/AttList.cpp mode change 100755 => 100644 src/Tables/AttList.h mode change 100755 => 100644 src/Tables/AttWriter.cpp mode change 100755 => 100644 src/Tables/AttWriter.h mode change 100755 => 100644 src/Tables/CMakeLists.txt mode change 100755 => 100644 src/Tables/CorrectionBase.cpp mode change 100755 => 100644 src/Tables/CorrectionBase.h mode change 100755 => 100644 src/Tables/Eigen.cpp mode change 100755 => 100644 src/Tables/Eigen.h mode change 100755 => 100644 src/Tables/Envelope.cpp mode change 100755 => 100644 src/Tables/Envelope.h mode change 100755 => 100644 src/Tables/Flatten.h mode change 100755 => 100644 src/Tables/Insertion.cpp mode change 100755 => 100644 src/Tables/Insertion.h mode change 100755 => 100644 src/Tables/List.cpp mode change 100755 => 100644 src/Tables/List.h mode change 100755 => 100644 src/Tables/MatrixCmd.cpp mode change 100755 => 100644 src/Tables/MatrixCmd.h mode change 100755 => 100644 src/Tables/Micado.cpp mode change 100755 => 100644 src/Tables/Micado.h mode change 100755 => 100644 src/Tables/Period.cpp mode change 100755 => 100644 src/Tables/Period.h mode change 100755 => 100644 src/Tables/RangeSelector.cpp mode change 100755 => 100644 src/Tables/RangeSelector.h mode change 100755 => 100644 src/Tables/Selector.cpp mode change 100755 => 100644 src/Tables/Selector.h mode change 100755 => 100644 src/Tables/Survey.cpp mode change 100755 => 100644 src/Tables/Survey.h mode change 100755 => 100644 src/Tables/TableTester.cpp mode change 100755 => 100644 src/Tables/TableTester.h mode change 100755 => 100644 src/Tables/ThreadAll.cpp mode change 100755 => 100644 src/Tables/ThreadAll.h mode change 100755 => 100644 src/Tables/ThreadBpm.cpp mode change 100755 => 100644 src/Tables/ThreadBpm.h mode change 100755 => 100644 src/Tables/Twiss.cpp mode change 100755 => 100644 src/Tables/Twiss.h mode change 100755 => 100644 src/Tables/Twiss3.cpp mode change 100755 => 100644 src/Tables/Twiss3.h mode change 100755 => 100644 src/Track/CMakeLists.txt mode change 100755 => 100644 src/Track/Track.cpp mode change 100755 => 100644 src/Track/Track.h mode change 100755 => 100644 src/Track/TrackCmd.cpp mode change 100755 => 100644 src/Track/TrackCmd.h mode change 100755 => 100644 src/Track/TrackEnd.cpp mode change 100755 => 100644 src/Track/TrackEnd.h mode change 100755 => 100644 src/Track/TrackParser.cpp mode change 100755 => 100644 src/Track/TrackParser.h mode change 100755 => 100644 src/Track/TrackRun.cpp mode change 100755 => 100644 src/Track/TrackRun.h mode change 100755 => 100644 src/Track/TrackSave.cpp mode change 100755 => 100644 src/Track/TrackSave.h mode change 100755 => 100644 src/Track/TrackStart.cpp mode change 100755 => 100644 src/Track/TrackStart.h mode change 100755 => 100644 src/Utilities/CMakeLists.txt mode change 100755 => 100644 src/Utilities/NumToStr.h mode change 100755 => 100644 src/Utilities/OpalException.cpp mode change 100755 => 100644 src/Utilities/OpalException.h mode change 100755 => 100644 src/Utilities/OpalFilter.cpp mode change 100755 => 100644 src/Utilities/OpalFilter.h mode change 100755 => 100644 src/Utilities/OpalSection.cpp mode change 100755 => 100644 src/Utilities/OpalSection.h mode change 100755 => 100644 src/Utilities/RegularExpression.cpp mode change 100755 => 100644 src/Utilities/RegularExpression.h mode change 100755 => 100644 src/Utilities/Round.cpp mode change 100755 => 100644 src/Utilities/Round.h mode change 100755 => 100644 src/Utilities/Timer.cpp mode change 100755 => 100644 src/Utilities/Timer.h mode change 100755 => 100644 src/Utilities/TpsWerrf.cpp mode change 100755 => 100644 src/Utilities/TpsWerrf.h mode change 100755 => 100644 src/Utilities/Truncate.cpp mode change 100755 => 100644 src/Utilities/Truncate.h mode change 100755 => 100644 src/ValueDefinitions/BoolConstant.cpp mode change 100755 => 100644 src/ValueDefinitions/BoolConstant.h mode change 100755 => 100644 src/ValueDefinitions/CMakeLists.txt mode change 100755 => 100644 src/ValueDefinitions/RealConstant.cpp mode change 100755 => 100644 src/ValueDefinitions/RealConstant.h mode change 100755 => 100644 src/ValueDefinitions/RealVariable.cpp mode change 100755 => 100644 src/ValueDefinitions/RealVariable.h mode change 100755 => 100644 src/ValueDefinitions/RealVector.cpp mode change 100755 => 100644 src/ValueDefinitions/RealVector.h mode change 100755 => 100644 src/ValueDefinitions/StringConstant.cpp mode change 100755 => 100644 src/ValueDefinitions/StringConstant.h mode change 100755 => 100644 src/addToDoxygenMainPage.h mode change 100755 => 100644 src/changes.cpp mode change 100755 => 100644 src/changes.h mode change 100755 => 100644 src/config.h.in mode change 100755 => 100644 src/opal.cpp mode change 100755 => 100644 src/opal.h mode change 100755 => 100644 src/revision.h.in mode change 100755 => 100644 tests/CMakeLists.txt mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1-RT.o mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1.in mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1.rt mode change 100755 => 100644 tests/Kollimator/Degrader/Degrader-1.sge mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.lbal mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.lbal.md5 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.out mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.out.md5 mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.stat mode change 100755 => 100644 tests/Kollimator/Degrader/reference/Degrader-1.stat.md5 mode change 100755 => 100644 tests/Kollimator/collimator.in mode change 100755 => 100644 tests/Main.cpp mode change 100755 => 100644 tests/PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in mode change 100755 => 100644 tests/classic_src/AbsBeamline/CMakeLists.txt mode change 100755 => 100644 tests/classic_src/AbsBeamline/DipoleFieldTest.cpp mode change 100755 => 100644 tests/classic_src/AbsBeamline/MultipoleTTest.cpp mode change 100755 => 100644 tests/classic_src/AbsBeamline/OffsetTest.cpp mode change 100755 => 100644 tests/classic_src/AbsBeamline/RingTest.cpp mode change 100755 => 100644 tests/classic_src/AbsBeamline/SBend3DTest.cpp mode change 100755 => 100644 tests/classic_src/AbsBeamline/SBend3D_map.field mode change 100755 => 100644 tests/classic_src/AbsBeamline/ScalingFFAGMagnetTest.cpp mode change 100755 => 100644 tests/classic_src/AbsBeamline/VariableRFCavityTest.cpp mode change 100755 => 100644 tests/classic_src/Algorithms/CMakeLists.txt mode change 100755 => 100644 tests/classic_src/Algorithms/PolynomialTimeDependenceTest.cpp mode change 100755 => 100644 tests/classic_src/CMakeLists.txt mode change 100755 => 100644 tests/classic_src/Fields/CMakeLists.txt mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/CMakeLists.txt mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/NDGridTest.cpp mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/PPSolveFactoryTest.cpp mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/PolynomialPatchTest.cpp mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/SolveFactoryTest.cpp mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/SquarePolynomialVectorTest.cpp mode change 100755 => 100644 tests/classic_src/Fields/Interpolation/ThreeDGridTest.cpp mode change 100755 => 100644 tests/classic_src/Utilities/CMakeLists.txt mode change 100755 => 100644 tests/classic_src/Utilities/RingSectionTest.cpp mode change 100755 => 100644 tests/ippl_src/CMakeLists.txt mode change 100755 => 100644 tests/ippl_src/Particle/CMakeLists.txt mode change 100755 => 100644 tests/ippl_src/Particle/EdgeCentering.cpp mode change 100755 => 100644 tests/opal_src/Algorithms/StatisticalErrors/CMakeLists.txt mode change 100755 => 100644 tests/opal_src/Algorithms/StatisticalErrors/Test1.cpp mode change 100755 => 100644 tests/opal_src/Algorithms/StatisticalErrors/Test1.h mode change 100755 => 100644 tests/opal_src/BasicActions/CMakeLists.txt mode change 100755 => 100644 tests/opal_src/BasicActions/DumpEMFieldsTest.cpp mode change 100755 => 100644 tests/opal_src/BasicActions/DumpFieldsTest.cpp mode change 100755 => 100644 tests/opal_src/CMakeLists.txt mode change 100755 => 100644 tests/opal_src/Distribution/BinomialTest.cpp mode change 100755 => 100644 tests/opal_src/Distribution/CMakeLists.txt mode change 100755 => 100644 tests/opal_src/Distribution/GaussTest.cpp mode change 100755 => 100644 tests/opal_src/Elements/CMakeLists.txt mode change 100755 => 100644 tests/opal_src/Elements/OpalOffsetTest.cpp mode change 100755 => 100644 tests/opal_src/Elements/OpalPolynomialTimeDependenceTest.cpp mode change 100755 => 100644 tests/opal_src/Elements/OpalVariableRFCavityTest.cpp mode change 100755 => 100644 tests/opal_src/Utilities/CMakeLists.txt mode change 100755 => 100644 tests/opal_src/Utilities/MockComponent.h mode change 100755 => 100644 tests/opal_test_utilities/CMakeLists.txt mode change 100755 => 100644 tests/opal_test_utilities/SilenceTest.cpp mode change 100755 => 100644 tests/opal_test_utilities/SilenceTest.h mode change 100755 => 100644 tests/sc/test-1.in mode change 100755 => 100644 tests/sc/test-2.in mode change 100755 => 100644 tests/sc/test-3.in mode change 100755 => 100644 tools/BandRF/Makefile.def mode change 100755 => 100644 tools/BandRF/Readme mode change 100755 => 100644 tools/BandRF/ascii2h5block_asgic.cpp mode change 100755 => 100644 tools/CMakeLists.txt mode change 100755 => 100644 tools/README mode change 100755 => 100644 tools/SDDS.patch mode change 100755 => 100644 tools/SDDSCMakeLists.tar.gz mode change 100755 => 100644 tools/SDDSReader/CMakeLists.txt mode change 100755 => 100644 tools/SDDSReader/config.h.in mode change 100755 => 100644 tools/SDDSReader/main.cpp mode change 100755 => 100644 tools/emacs/opal.el mode change 100755 => 100644 tools/opal2sdds/CMakeLists.txt mode change 100755 => 100644 tools/opal2sdds/config.h.in mode change 100755 => 100644 tools/opal2sdds/main.cpp mode change 100755 => 100644 tools/sdds2opal/CMakeLists.txt mode change 100755 => 100644 tools/sdds2opal/config.h.in mode change 100755 => 100644 tools/sdds2opal/main.cpp diff --git a/.gitattributes b/.gitattributes old mode 100755 new mode 100644 diff --git a/.gitignore b/.gitignore old mode 100755 new mode 100644 diff --git a/CMakeLists.txt b/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/CMakeModules/FindGSL.cmake b/CMakeModules/FindGSL.cmake old mode 100755 new mode 100644 diff --git a/CMakeModules/FindGTest.cmake b/CMakeModules/FindGTest.cmake old mode 100755 new mode 100644 diff --git a/CMakeModules/FindH5Hut.cmake b/CMakeModules/FindH5Hut.cmake old mode 100755 new mode 100644 diff --git a/CMakeModules/FindHDF5.cmake b/CMakeModules/FindHDF5.cmake old mode 100755 new mode 100644 diff --git a/CMakeModules/FindSDDS.cmake b/CMakeModules/FindSDDS.cmake old mode 100755 new mode 100644 diff --git a/Doxyfile b/Doxyfile old mode 100755 new mode 100644 diff --git a/README.md b/README.md old mode 100755 new mode 100644 diff --git a/cmake/OPALConfig.cmake.in b/cmake/OPALConfig.cmake.in old mode 100755 new mode 100644 diff --git a/doc/randomnotes.txt b/doc/randomnotes.txt old mode 100755 new mode 100644 diff --git a/doc/refcard/opal-ref-card-bibliography.bib b/doc/refcard/opal-ref-card-bibliography.bib old mode 100755 new mode 100644 diff --git a/doc/refcard/opal-refcard.tex b/doc/refcard/opal-refcard.tex old mode 100755 new mode 100644 diff --git a/ippl/CMakeLists.txt b/ippl/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/Doxyfile b/ippl/Doxyfile old mode 100755 new mode 100644 diff --git a/ippl/INSTALL b/ippl/INSTALL old mode 100755 new mode 100644 diff --git a/ippl/LICENSE b/ippl/LICENSE old mode 100755 new mode 100644 diff --git a/ippl/README b/ippl/README old mode 100755 new mode 100644 diff --git a/ippl/cmake/IPPLConfig.cmake.in b/ippl/cmake/IPPLConfig.cmake.in old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/dingbat.sty b/ippl/doc/tex/dingbat.sty old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/error_time.pdf b/ippl/doc/tex/error_time.pdf old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/figures/psi_logo_wide.eps b/ippl/doc/tex/figures/psi_logo_wide.eps old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/figures/psi_logo_wide.pdf b/ippl/doc/tex/figures/psi_logo_wide.pdf old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/greens.pdf b/ippl/doc/tex/greens.pdf old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/greens.ps b/ippl/doc/tex/greens.ps old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/html.sty b/ippl/doc/tex/html.sty old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/introduction.tex b/ippl/doc/tex/introduction.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_centering_ref.tex b/ippl/doc/tex/ippl_centering_ref.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_fft.tex b/ippl/doc/tex/ippl_fft.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_field_ref.tex b/ippl/doc/tex/ippl_field_ref.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_fieldlayout_ref.tex b/ippl/doc/tex/ippl_fieldlayout_ref.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_fields.tex b/ippl/doc/tex/ippl_fields.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_index_ref.tex b/ippl/doc/tex/ippl_index_ref.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_mesh_ref.tex b/ippl/doc/tex/ippl_mesh_ref.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_particles.tex b/ippl/doc/tex/ippl_particles.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_setup.tex b/ippl/doc/tex/ippl_setup.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/ippl_user_guide.tex b/ippl/doc/tex/ippl_user_guide.tex old mode 100755 new mode 100644 diff --git a/ippl/doc/tex/pdfdraftcopy.sty b/ippl/doc/tex/pdfdraftcopy.sty old mode 100755 new mode 100644 diff --git a/ippl/src/.gitignore b/ippl/src/.gitignore old mode 100755 new mode 100644 diff --git a/ippl/src/AmrParticle/AmrParticleBase.h b/ippl/src/AmrParticle/AmrParticleBase.h old mode 100755 new mode 100644 diff --git a/ippl/src/AmrParticle/AmrParticleBase.hpp b/ippl/src/AmrParticle/AmrParticleBase.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/AmrParticle/AmrParticleLevelCounter.h b/ippl/src/AmrParticle/AmrParticleLevelCounter.h old mode 100755 new mode 100644 diff --git a/ippl/src/AmrParticle/CMakeLists.txt b/ippl/src/AmrParticle/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/AmrParticle/ParticleAmrLayout.h b/ippl/src/AmrParticle/ParticleAmrLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/AntiSymTenzor.h b/ippl/src/AppTypes/AntiSymTenzor.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/AppTypeTraits.h b/ippl/src/AppTypes/AppTypeTraits.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/CMakeLists.txt b/ippl/src/AppTypes/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/GenVektor.h b/ippl/src/AppTypes/GenVektor.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/SymTenzor.h b/ippl/src/AppTypes/SymTenzor.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMeta.h b/ippl/src/AppTypes/TSVMeta.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaAssign.h b/ippl/src/AppTypes/TSVMetaAssign.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaBinary.h b/ippl/src/AppTypes/TSVMetaBinary.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaCompare.h b/ippl/src/AppTypes/TSVMetaCompare.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaCross.h b/ippl/src/AppTypes/TSVMetaCross.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaDot.h b/ippl/src/AppTypes/TSVMetaDot.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaDotDot.h b/ippl/src/AppTypes/TSVMetaDotDot.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/TSVMetaUnary.h b/ippl/src/AppTypes/TSVMetaUnary.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/Tenzor.h b/ippl/src/AppTypes/Tenzor.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/Vektor.h b/ippl/src/AppTypes/Vektor.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/dcomplex.h b/ippl/src/AppTypes/dcomplex.h old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp b/ippl/src/AppTypes/inst/AntiSymTenzor_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp b/ippl/src/AppTypes/inst/AntiSymTenzor_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp b/ippl/src/AppTypes/inst/AntiSymTenzor_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/SymTenzor_1D.cpp b/ippl/src/AppTypes/inst/SymTenzor_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/SymTenzor_2D.cpp b/ippl/src/AppTypes/inst/SymTenzor_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/SymTenzor_3D.cpp b/ippl/src/AppTypes/inst/SymTenzor_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/Tenzor_1D.cpp b/ippl/src/AppTypes/inst/Tenzor_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/Tenzor_2D.cpp b/ippl/src/AppTypes/inst/Tenzor_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/Tenzor_3D.cpp b/ippl/src/AppTypes/inst/Tenzor_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/Vektor_1D.cpp b/ippl/src/AppTypes/inst/Vektor_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/Vektor_2D.cpp b/ippl/src/AppTypes/inst/Vektor_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/AppTypes/inst/Vektor_3D.cpp b/ippl/src/AppTypes/inst/Vektor_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/CMakeLists.txt b/ippl/src/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/CMakeLists.txt b/ippl/src/DataSource/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataConnect.cpp b/ippl/src/DataSource/DataConnect.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataConnect.h b/ippl/src/DataSource/DataConnect.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataConnectCreator.cpp b/ippl/src/DataSource/DataConnectCreator.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataConnectCreator.h b/ippl/src/DataSource/DataConnectCreator.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataSource.cpp b/ippl/src/DataSource/DataSource.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataSource.h b/ippl/src/DataSource/DataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/DataSourceObject.h b/ippl/src/DataSource/DataSourceObject.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FieldDataSource.h b/ippl/src/DataSource/FieldDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FieldDataSource.hpp b/ippl/src/DataSource/FieldDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FileDataConnect.h b/ippl/src/DataSource/FileDataConnect.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FileFieldDataSource.h b/ippl/src/DataSource/FileFieldDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FileFieldDataSource.hpp b/ippl/src/DataSource/FileFieldDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FilePtclAttribDataSource.h b/ippl/src/DataSource/FilePtclAttribDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FilePtclAttribDataSource.hpp b/ippl/src/DataSource/FilePtclAttribDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FilePtclBaseDataSource.h b/ippl/src/DataSource/FilePtclBaseDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/FilePtclBaseDataSource.hpp b/ippl/src/DataSource/FilePtclBaseDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/MakeDataSource.h b/ippl/src/DataSource/MakeDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/MakeDataSource.hpp b/ippl/src/DataSource/MakeDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/PtclAttribDataSource.cpp b/ippl/src/DataSource/PtclAttribDataSource.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/PtclAttribDataSource.h b/ippl/src/DataSource/PtclAttribDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/PtclBaseDataSource.cpp b/ippl/src/DataSource/PtclBaseDataSource.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/PtclBaseDataSource.h b/ippl/src/DataSource/PtclBaseDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/ScalarDataSource.h b/ippl/src/DataSource/ScalarDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/ScalarDataSource.hpp b/ippl/src/DataSource/ScalarDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/StringDataSource.h b/ippl/src/DataSource/StringDataSource.h old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/StringDataSource.hpp b/ippl/src/DataSource/StringDataSource.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldAppTypesDS_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_1D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_2D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_3D.cpp b/ippl/src/DataSource/inst/FileFieldDS_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParAttribAppTypesDS_1D.cpp b/ippl/src/DataSource/inst/FileParAttribAppTypesDS_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParAttribAppTypesDS_2D.cpp b/ippl/src/DataSource/inst/FileParAttribAppTypesDS_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParAttribAppTypesDS_3D.cpp b/ippl/src/DataSource/inst/FileParAttribAppTypesDS_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParAttribDS_all.cpp b/ippl/src/DataSource/inst/FileParAttribDS_all.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_1D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_2D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_3D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_1D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_2D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_3D.cpp b/ippl/src/DataSource/inst/FileParBaseInteractDS_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_1D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_2D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_3D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_1D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_2D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_3D.cpp b/ippl/src/DataSource/inst/FileParBaseSpatialDS_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseUniformDS_1D.cpp b/ippl/src/DataSource/inst/FileParBaseUniformDS_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseUniformDS_2D.cpp b/ippl/src/DataSource/inst/FileParBaseUniformDS_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DataSource/inst/FileParBaseUniformDS_3D.cpp b/ippl/src/DataSource/inst/FileParBaseUniformDS_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/DomainMap/CMakeLists.txt b/ippl/src/DomainMap/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/DomainMap/DomainMap.h b/ippl/src/DomainMap/DomainMap.h old mode 100755 new mode 100644 diff --git a/ippl/src/DomainMap/DomainMap.hpp b/ippl/src/DomainMap/DomainMap.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/CMakeLists.txt b/ippl/src/FFT/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/FFT.h b/ippl/src/FFT/FFT.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/FFT.hpp b/ippl/src/FFT/FFT.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/FFTBase.h b/ippl/src/FFT/FFTBase.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/FFTBase.hpp b/ippl/src/FFT/FFTBase.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/SCSL_FFT.F b/ippl/src/FFT/SCSL_FFT.F old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/SCSL_FFT.h b/ippl/src/FFT/SCSL_FFT.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/c_utils.c b/ippl/src/FFT/c_utils.c old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/c_utils.h b/ippl/src/FFT/c_utils.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/f2c.h b/ippl/src/FFT/f2c.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/fftpack.F b/ippl/src/FFT/fftpack.F old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/fftpack.cpp b/ippl/src/FFT/fftpack.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/fftpack.h b/ippl/src/FFT/fftpack.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/fftpack_FFT.h b/ippl/src/FFT/fftpack_FFT.h old mode 100755 new mode 100644 diff --git a/ippl/src/FFT/fftpack_inc.c b/ippl/src/FFT/fftpack_inc.c old mode 100755 new mode 100644 diff --git a/ippl/src/Field/Assign.h b/ippl/src/Field/Assign.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/Assign.hpp b/ippl/src/Field/Assign.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/AssignDefs.h b/ippl/src/Field/AssignDefs.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/AssignGeneralBF.hpp b/ippl/src/Field/AssignGeneralBF.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/AssignGeneralIBF.hpp b/ippl/src/Field/AssignGeneralIBF.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/AssignTags.h b/ippl/src/Field/AssignTags.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BCond.h b/ippl/src/Field/BCond.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BCond.hpp b/ippl/src/Field/BCond.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BareField.h b/ippl/src/Field/BareField.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BareField.hpp b/ippl/src/Field/BareField.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BareFieldIterator.h b/ippl/src/Field/BareFieldIterator.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BrickExpression.h b/ippl/src/Field/BrickExpression.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BrickExpression.hpp b/ippl/src/Field/BrickExpression.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BrickIterator.h b/ippl/src/Field/BrickIterator.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/BrickIterator.hpp b/ippl/src/Field/BrickIterator.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/CMakeLists.txt b/ippl/src/Field/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Field/CompressedBrickIterator.h b/ippl/src/Field/CompressedBrickIterator.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/CompressedBrickIterator.hpp b/ippl/src/Field/CompressedBrickIterator.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/Field.h b/ippl/src/Field/Field.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/Field.hpp b/ippl/src/Field/Field.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/FieldLoc.h b/ippl/src/Field/FieldLoc.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/FieldSpec.h b/ippl/src/Field/FieldSpec.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/GuardCellSizes.h b/ippl/src/Field/GuardCellSizes.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/GuardCellSizes.hpp b/ippl/src/Field/GuardCellSizes.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/IndexedBareField.h b/ippl/src/Field/IndexedBareField.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/IndexedBareField.hpp b/ippl/src/Field/IndexedBareField.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/IndexedField.h b/ippl/src/Field/IndexedField.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/LField.h b/ippl/src/Field/LField.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/LField.hpp b/ippl/src/Field/LField.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/ReductionLoc.h b/ippl/src/Field/ReductionLoc.h old mode 100755 new mode 100644 diff --git a/ippl/src/Field/ReductionLoc.hpp b/ippl/src/Field/ReductionLoc.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_1D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_2D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_3D.cpp b/ippl/src/Field/inst/BCondAppTypes_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp b/ippl/src/Field/inst/BCond_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp b/ippl/src/Field/inst/BCond_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp b/ippl/src/Field/inst/BCond_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp b/ippl/src/Field/inst/BCond_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp b/ippl/src/Field/inst/BCond_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp b/ippl/src/Field/inst/BCond_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp b/ippl/src/Field/inst/BCond_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp b/ippl/src/Field/inst/BCond_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp b/ippl/src/Field/inst/BCond_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp b/ippl/src/Field/inst/BCond_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp b/ippl/src/Field/inst/BCond_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp b/ippl/src/Field/inst/BCond_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareFieldAppTypes_1D.cpp b/ippl/src/Field/inst/BareFieldAppTypes_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareFieldAppTypes_2D.cpp b/ippl/src/Field/inst/BareFieldAppTypes_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareFieldAppTypes_3D.cpp b/ippl/src/Field/inst/BareFieldAppTypes_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_cmplx_1D.cpp b/ippl/src/Field/inst/BareField_cmplx_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_cmplx_2D.cpp b/ippl/src/Field/inst/BareField_cmplx_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_cmplx_3D.cpp b/ippl/src/Field/inst/BareField_cmplx_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_fp_1D.cpp b/ippl/src/Field/inst/BareField_fp_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_fp_2D.cpp b/ippl/src/Field/inst/BareField_fp_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_fp_3D.cpp b/ippl/src/Field/inst/BareField_fp_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_int_1D.cpp b/ippl/src/Field/inst/BareField_int_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_int_2D.cpp b/ippl/src/Field/inst/BareField_int_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/BareField_int_3D.cpp b/ippl/src/Field/inst/BareField_int_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_1D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_2D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_3D.cpp b/ippl/src/Field/inst/FieldAppTypes_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Cell_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Cell_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Cell_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Vert_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Vert_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Cart_Vert_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Cell_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Cell_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Cell_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Vert_1D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Vert_2D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_cmplx_Unif_Vert_3D.cpp b/ippl/src/Field/inst/Field_cmplx_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp b/ippl/src/Field/inst/Field_fp_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp b/ippl/src/Field/inst/Field_fp_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Cart_Cell_1D.cpp b/ippl/src/Field/inst/Field_int_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Cart_Cell_2D.cpp b/ippl/src/Field/inst/Field_int_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Cart_Cell_3D.cpp b/ippl/src/Field/inst/Field_int_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Cart_Vert_1D.cpp b/ippl/src/Field/inst/Field_int_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Cart_Vert_2D.cpp b/ippl/src/Field/inst/Field_int_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Cart_Vert_3D.cpp b/ippl/src/Field/inst/Field_int_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Unif_Cell_1D.cpp b/ippl/src/Field/inst/Field_int_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Unif_Cell_2D.cpp b/ippl/src/Field/inst/Field_int_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Unif_Cell_3D.cpp b/ippl/src/Field/inst/Field_int_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Unif_Vert_1D.cpp b/ippl/src/Field/inst/Field_int_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Unif_Vert_2D.cpp b/ippl/src/Field/inst/Field_int_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/Field_int_Unif_Vert_3D.cpp b/ippl/src/Field/inst/Field_int_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/GuardCellSizes_1D.cpp b/ippl/src/Field/inst/GuardCellSizes_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/GuardCellSizes_2D.cpp b/ippl/src/Field/inst/GuardCellSizes_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/GuardCellSizes_3D.cpp b/ippl/src/Field/inst/GuardCellSizes_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/LFieldAppTypes_1D.cpp b/ippl/src/Field/inst/LFieldAppTypes_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/LFieldAppTypes_2D.cpp b/ippl/src/Field/inst/LFieldAppTypes_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/LFieldAppTypes_3D.cpp b/ippl/src/Field/inst/LFieldAppTypes_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/LField_1D.cpp b/ippl/src/Field/inst/LField_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/LField_2D.cpp b/ippl/src/Field/inst/LField_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Field/inst/LField_3D.cpp b/ippl/src/Field/inst/LField_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/BinaryBalancer.h b/ippl/src/FieldLayout/BinaryBalancer.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/BinaryBalancer.hpp b/ippl/src/FieldLayout/BinaryBalancer.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/CMakeLists.txt b/ippl/src/FieldLayout/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/CenteredFieldLayout.h b/ippl/src/FieldLayout/CenteredFieldLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/CenteredFieldLayout.hpp b/ippl/src/FieldLayout/CenteredFieldLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/ConejoBalancer.h b/ippl/src/FieldLayout/ConejoBalancer.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/ConejoBalancer.hpp b/ippl/src/FieldLayout/ConejoBalancer.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/ConejoBalancer_inst.cpp b/ippl/src/FieldLayout/ConejoBalancer_inst.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/FieldLayout.h b/ippl/src/FieldLayout/FieldLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/FieldLayout.hpp b/ippl/src/FieldLayout/FieldLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/FieldLayoutUser.cpp b/ippl/src/FieldLayout/FieldLayoutUser.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/FieldLayoutUser.h b/ippl/src/FieldLayout/FieldLayoutUser.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/MultiBalancer.cpp b/ippl/src/FieldLayout/MultiBalancer.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/MultiBalancer.h b/ippl/src/FieldLayout/MultiBalancer.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/MultiBalancer.t.cpp b/ippl/src/FieldLayout/MultiBalancer.t.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/VRB.cpp b/ippl/src/FieldLayout/VRB.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/VRB.h b/ippl/src/FieldLayout/VRB.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/Vnode.h b/ippl/src/FieldLayout/Vnode.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/VnodeMultiBalancer.h b/ippl/src/FieldLayout/VnodeMultiBalancer.h old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/VnodeMultiBalancer.hpp b/ippl/src/FieldLayout/VnodeMultiBalancer.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Cart_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Cell_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_1D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_2D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_3D.cpp b/ippl/src/FieldLayout/inst/CenteredFieldLayout_Unif_Vert_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/FieldLayout_1D.cpp b/ippl/src/FieldLayout/inst/FieldLayout_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/FieldLayout_2D.cpp b/ippl/src/FieldLayout/inst/FieldLayout_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/FieldLayout/inst/FieldLayout_3D.cpp b/ippl/src/FieldLayout/inst/FieldLayout_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/CMakeLists.txt b/ippl/src/Index/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Index/Index.cpp b/ippl/src/Index/Index.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/Index.h b/ippl/src/Index/Index.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/IndexInlines.h b/ippl/src/Index/IndexInlines.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/IndexedSIndex.h b/ippl/src/Index/IndexedSIndex.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/LSIndex.h b/ippl/src/Index/LSIndex.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/NDIndex.h b/ippl/src/Index/NDIndex.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/NDIndexInlines.h b/ippl/src/Index/NDIndexInlines.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/SIndex.h b/ippl/src/Index/SIndex.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/SIndex.hpp b/ippl/src/Index/SIndex.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/SIndexAssign.h b/ippl/src/Index/SIndexAssign.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/SIndexAssign.hpp b/ippl/src/Index/SIndexAssign.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/SOffset.h b/ippl/src/Index/SOffset.h old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/LSIndex_1D.cpp b/ippl/src/Index/inst/LSIndex_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/LSIndex_2D.cpp b/ippl/src/Index/inst/LSIndex_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/LSIndex_3D.cpp b/ippl/src/Index/inst/LSIndex_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/NDIndex_1D.cpp b/ippl/src/Index/inst/NDIndex_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/NDIndex_2D.cpp b/ippl/src/Index/inst/NDIndex_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/NDIndex_3D.cpp b/ippl/src/Index/inst/NDIndex_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/SIndex_1D.cpp b/ippl/src/Index/inst/SIndex_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/SIndex_2D.cpp b/ippl/src/Index/inst/SIndex_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/SIndex_3D.cpp b/ippl/src/Index/inst/SIndex_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/SOffset_1D.cpp b/ippl/src/Index/inst/SOffset_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/SOffset_2D.cpp b/ippl/src/Index/inst/SOffset_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Index/inst/SOffset_3D.cpp b/ippl/src/Index/inst/SOffset_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Ippl.h b/ippl/src/Ippl.h old mode 100755 new mode 100644 diff --git a/ippl/src/IpplVersions.h.in b/ippl/src/IpplVersions.h.in old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/CMakeLists.txt b/ippl/src/Meshes/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/Cartesian.h b/ippl/src/Meshes/Cartesian.h old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/Cartesian.hpp b/ippl/src/Meshes/Cartesian.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/CartesianCentering.h b/ippl/src/Meshes/CartesianCentering.h old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/CartesianCentering.hpp b/ippl/src/Meshes/CartesianCentering.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/CartesianCentering_inst.cpp b/ippl/src/Meshes/CartesianCentering_inst.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/CartesianStencilSetup.h b/ippl/src/Meshes/CartesianStencilSetup.h old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/Centering.cpp b/ippl/src/Meshes/Centering.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/Centering.h b/ippl/src/Meshes/Centering.h old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/Mesh.h b/ippl/src/Meshes/Mesh.h old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/Mesh.hpp b/ippl/src/Meshes/Mesh.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/UniformCartesian.h b/ippl/src/Meshes/UniformCartesian.h old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/UniformCartesian.hpp b/ippl/src/Meshes/UniformCartesian.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/Cartesian_1D.cpp b/ippl/src/Meshes/inst/Cartesian_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/Cartesian_2D.cpp b/ippl/src/Meshes/inst/Cartesian_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/Cartesian_3D.cpp b/ippl/src/Meshes/inst/Cartesian_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/Mesh_1D.cpp b/ippl/src/Meshes/inst/Mesh_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/Mesh_2D.cpp b/ippl/src/Meshes/inst/Mesh_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/Mesh_3D.cpp b/ippl/src/Meshes/inst/Mesh_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/UniformCartesian_1D.cpp b/ippl/src/Meshes/inst/UniformCartesian_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/UniformCartesian_2D.cpp b/ippl/src/Meshes/inst/UniformCartesian_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Meshes/inst/UniformCartesian_3D.cpp b/ippl/src/Meshes/inst/UniformCartesian_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CMakeLists.txt b/ippl/src/Message/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CRC.cpp b/ippl/src/Message/CRC.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CRC.h b/ippl/src/Message/CRC.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommCreator.cpp b/ippl/src/Message/CommCreator.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommCreator.h b/ippl/src/Message/CommCreator.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommMPI.cpp b/ippl/src/Message/CommMPI.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommMPI.h b/ippl/src/Message/CommMPI.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommPM.cpp b/ippl/src/Message/CommPM.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommPM.h b/ippl/src/Message/CommPM.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommSHMEMPI.cpp b/ippl/src/Message/CommSHMEMPI.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/CommSHMEMPI.h b/ippl/src/Message/CommSHMEMPI.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Communicate.cpp b/ippl/src/Message/Communicate.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Communicate.h b/ippl/src/Message/Communicate.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/DataTypes.h b/ippl/src/Message/DataTypes.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Formatter.cpp b/ippl/src/Message/Formatter.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Formatter.h b/ippl/src/Message/Formatter.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/GlobalComm.h b/ippl/src/Message/GlobalComm.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/GlobalComm.hpp b/ippl/src/Message/GlobalComm.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Message.h b/ippl/src/Message/Message.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Message.hpp b/ippl/src/Message/Message.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/MessageFunctions.cpp b/ippl/src/Message/MessageFunctions.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Operations.h b/ippl/src/Message/Operations.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/TagMaker.h b/ippl/src/Message/TagMaker.h old mode 100755 new mode 100644 diff --git a/ippl/src/Message/Tags.h b/ippl/src/Message/Tags.h old mode 100755 new mode 100644 diff --git a/ippl/src/PETE/CMakeLists.txt b/ippl/src/PETE/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/PETE/IpplExpressions.h b/ippl/src/PETE/IpplExpressions.h old mode 100755 new mode 100644 diff --git a/ippl/src/PETE/IpplTypeComputations.h b/ippl/src/PETE/IpplTypeComputations.h old mode 100755 new mode 100644 diff --git a/ippl/src/PETE/PETE.h b/ippl/src/PETE/PETE.h old mode 100755 new mode 100644 diff --git a/ippl/src/PETE/TypeComputations.h b/ippl/src/PETE/TypeComputations.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/AbstractParticle.h b/ippl/src/Particle/AbstractParticle.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/BoxParticleCachingPolicy.h b/ippl/src/Particle/BoxParticleCachingPolicy.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/CMakeLists.txt b/ippl/src/Particle/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/CellParticleCachingPolicy.h b/ippl/src/Particle/CellParticleCachingPolicy.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/GenArrayParticle.h b/ippl/src/Particle/GenArrayParticle.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/GenParticle.h b/ippl/src/Particle/GenParticle.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/IntCIC.h b/ippl/src/Particle/IntCIC.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/IntNGP.h b/ippl/src/Particle/IntNGP.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/IntSUDS.h b/ippl/src/Particle/IntSUDS.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/IntTSC.h b/ippl/src/Particle/IntTSC.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/Interpolator.h b/ippl/src/Particle/Interpolator.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/IpplParticleBase.h b/ippl/src/Particle/IpplParticleBase.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/IpplParticleBase.hpp b/ippl/src/Particle/IpplParticleBase.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/NoParticleCachingPolicy.h b/ippl/src/Particle/NoParticleCachingPolicy.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PAssign.h b/ippl/src/Particle/PAssign.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PAssign.hpp b/ippl/src/Particle/PAssign.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PAssignDefs.h b/ippl/src/Particle/PAssignDefs.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/BasicPairBuilder.h b/ippl/src/Particle/PairBuilder/BasicPairBuilder.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/CMakeLists.txt b/ippl/src/Particle/PairBuilder/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilder.h b/ippl/src/Particle/PairBuilder/HashPairBuilder.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodic.h b/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodic.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel.h b/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel_globCHaining.h b/ippl/src/Particle/PairBuilder/HashPairBuilderPeriodicParallel_globCHaining.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/PairConditions.h b/ippl/src/Particle/PairBuilder/PairConditions.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/PairBuilder/SortingPairBuilder.h b/ippl/src/Particle/PairBuilder/SortingPairBuilder.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleAttrib.h b/ippl/src/Particle/ParticleAttrib.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleAttrib.hpp b/ippl/src/Particle/ParticleAttrib.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleAttribBase.h b/ippl/src/Particle/ParticleAttribBase.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleAttribElem.h b/ippl/src/Particle/ParticleAttribElem.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleBConds.h b/ippl/src/Particle/ParticleBConds.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleBalancer.h b/ippl/src/Particle/ParticleBalancer.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleBalancer.hpp b/ippl/src/Particle/ParticleBalancer.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleCashedLayout.h b/ippl/src/Particle/ParticleCashedLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleCashedLayout.hpp b/ippl/src/Particle/ParticleCashedLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleInteractAttrib.h b/ippl/src/Particle/ParticleInteractAttrib.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleInteractAttrib.hpp b/ippl/src/Particle/ParticleInteractAttrib.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleInteractLayout.h b/ippl/src/Particle/ParticleInteractLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleInteractLayout.hpp b/ippl/src/Particle/ParticleInteractLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleLayout.h b/ippl/src/Particle/ParticleLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleLayout.hpp b/ippl/src/Particle/ParticleLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleLayoutFromGrid.cpp b/ippl/src/Particle/ParticleLayoutFromGrid.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleLayoutFromGrid.h b/ippl/src/Particle/ParticleLayoutFromGrid.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleSpatialLayout.cppNudge b/ippl/src/Particle/ParticleSpatialLayout.cppNudge old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleSpatialLayout.h b/ippl/src/Particle/ParticleSpatialLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleSpatialLayout.hNudge b/ippl/src/Particle/ParticleSpatialLayout.hNudge old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleSpatialLayout.hpp b/ippl/src/Particle/ParticleSpatialLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleUniformLayout.h b/ippl/src/Particle/ParticleUniformLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/ParticleUniformLayout.hpp b/ippl/src/Particle/ParticleUniformLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleAttribAppTypes_1D.cpp b/ippl/src/Particle/inst/ParticleAttribAppTypes_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleAttribAppTypes_2D.cpp b/ippl/src/Particle/inst/ParticleAttribAppTypes_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleAttribAppTypes_3D.cpp b/ippl/src/Particle/inst/ParticleAttribAppTypes_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleAttrib_all.cpp b/ippl/src/Particle/inst/ParticleAttrib_all.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBConds_1D.cpp b/ippl/src/Particle/inst/ParticleBConds_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBConds_2D.cpp b/ippl/src/Particle/inst/ParticleBConds_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBConds_3D.cpp b/ippl/src/Particle/inst/ParticleBConds_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseInteract_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleBaseInteract_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleBaseSpatial_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseUniform_1D.cpp b/ippl/src/Particle/inst/ParticleBaseUniform_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseUniform_2D.cpp b/ippl/src/Particle/inst/ParticleBaseUniform_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleBaseUniform_3D.cpp b/ippl/src/Particle/inst/ParticleBaseUniform_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleCashedLayout_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleCashedLayout_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_1D.cpp b/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_2D.cpp b/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_3D.cpp b/ippl/src/Particle/inst/ParticleInteractAttribAppTypes_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractAttrib_all.cpp b/ippl/src/Particle/inst/ParticleInteractAttrib_all.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleInteractLayout_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleInteractLayout_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleLayout_1D.cpp b/ippl/src/Particle/inst/ParticleLayout_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleLayout_2D.cpp b/ippl/src/Particle/inst/ParticleLayout_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleLayout_3D.cpp b/ippl/src/Particle/inst/ParticleLayout_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_1D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_2D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_3D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_1D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_2D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_3D.cpp b/ippl/src/Particle/inst/ParticleSpatialLayout_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleUniformLayout_1D.cpp b/ippl/src/Particle/inst/ParticleUniformLayout_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleUniformLayout_2D.cpp b/ippl/src/Particle/inst/ParticleUniformLayout_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Particle/inst/ParticleUniformLayout_3D.cpp b/ippl/src/Particle/inst/ParticleUniformLayout_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Profile/CMakeLists.txt b/ippl/src/Profile/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Profile/Profiler.cpp b/ippl/src/Profile/Profiler.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Profile/Profiler.h b/ippl/src/Profile/Profiler.h old mode 100755 new mode 100644 diff --git a/ippl/src/ReadMeBuild b/ippl/src/ReadMeBuild old mode 100755 new mode 100644 diff --git a/ippl/src/Region/CMakeLists.txt b/ippl/src/Region/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Region/NDRegion.h b/ippl/src/Region/NDRegion.h old mode 100755 new mode 100644 diff --git a/ippl/src/Region/PRegion.h b/ippl/src/Region/PRegion.h old mode 100755 new mode 100644 diff --git a/ippl/src/Region/RegionLayout.h b/ippl/src/Region/RegionLayout.h old mode 100755 new mode 100644 diff --git a/ippl/src/Region/RegionLayout.hpp b/ippl/src/Region/RegionLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/Rnode.h b/ippl/src/Region/Rnode.h old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/NDRegion_1D.cpp b/ippl/src/Region/inst/NDRegion_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/NDRegion_2D.cpp b/ippl/src/Region/inst/NDRegion_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/NDRegion_3D.cpp b/ippl/src/Region/inst/NDRegion_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/PRegion_all.cpp b/ippl/src/Region/inst/PRegion_all.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/RegionLayout_Cart_1D.cpp b/ippl/src/Region/inst/RegionLayout_Cart_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/RegionLayout_Cart_2D.cpp b/ippl/src/Region/inst/RegionLayout_Cart_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/RegionLayout_Cart_3D.cpp b/ippl/src/Region/inst/RegionLayout_Cart_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/RegionLayout_Unif_1D.cpp b/ippl/src/Region/inst/RegionLayout_Unif_1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/RegionLayout_Unif_2D.cpp b/ippl/src/Region/inst/RegionLayout_Unif_2D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Region/inst/RegionLayout_Unif_3D.cpp b/ippl/src/Region/inst/RegionLayout_Unif_3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/CMakeLists.txt b/ippl/src/SubField/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubBareField.h b/ippl/src/SubField/SubBareField.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubBareField.hpp b/ippl/src/SubField/SubBareField.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubField.h b/ippl/src/SubField/SubField.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubField.hpp b/ippl/src/SubField/SubField.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubFieldAssign.h b/ippl/src/SubField/SubFieldAssign.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubFieldAssign.hpp b/ippl/src/SubField/SubFieldAssign.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubFieldAssignDefs.h b/ippl/src/SubField/SubFieldAssignDefs.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubFieldIter.h b/ippl/src/SubField/SubFieldIter.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubField/SubFieldTraits.h b/ippl/src/SubField/SubFieldTraits.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubParticle/CMakeLists.txt b/ippl/src/SubParticle/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/SubParticle/SubParticleAssign.h b/ippl/src/SubParticle/SubParticleAssign.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubParticle/SubParticleAssign.hpp b/ippl/src/SubParticle/SubParticleAssign.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/SubParticle/SubParticleAssignDefs.h b/ippl/src/SubParticle/SubParticleAssignDefs.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubParticle/SubParticleAttrib.h b/ippl/src/SubParticle/SubParticleAttrib.h old mode 100755 new mode 100644 diff --git a/ippl/src/SubParticle/SubParticleAttrib.hpp b/ippl/src/SubParticle/SubParticleAttrib.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/CMakeLists.txt b/ippl/src/Utility/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscBuffer.cpp b/ippl/src/Utility/DiscBuffer.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscBuffer.h b/ippl/src/Utility/DiscBuffer.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscConfig.cpp b/ippl/src/Utility/DiscConfig.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscConfig.h b/ippl/src/Utility/DiscConfig.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscField.h b/ippl/src/Utility/DiscField.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscField.hpp b/ippl/src/Utility/DiscField.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscMeta.cpp b/ippl/src/Utility/DiscMeta.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscMeta.h b/ippl/src/Utility/DiscMeta.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscParticle.h b/ippl/src/Utility/DiscParticle.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscParticle.hpp b/ippl/src/Utility/DiscParticle.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscParticleFunctions.cpp b/ippl/src/Utility/DiscParticleFunctions.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/DiscType.h b/ippl/src/Utility/DiscType.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldBlock.h b/ippl/src/Utility/FieldBlock.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldBlock.hpp b/ippl/src/Utility/FieldBlock.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldDebug.h b/ippl/src/Utility/FieldDebug.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldDebug.hpp b/ippl/src/Utility/FieldDebug.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldDebugFunctions.cpp b/ippl/src/Utility/FieldDebugFunctions.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldDebugFunctions.h b/ippl/src/Utility/FieldDebugFunctions.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldDebugPrint.h b/ippl/src/Utility/FieldDebugPrint.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldDebugPrint.hpp b/ippl/src/Utility/FieldDebugPrint.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldPrint.h b/ippl/src/Utility/FieldPrint.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldPrint.hpp b/ippl/src/Utility/FieldPrint.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldView.h b/ippl/src/Utility/FieldView.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/FieldView.hpp b/ippl/src/Utility/FieldView.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Inform.cpp b/ippl/src/Utility/Inform.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Inform.h b/ippl/src/Utility/Inform.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IplCounter.h b/ippl/src/Utility/IplCounter.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplCounter.cpp b/ippl/src/Utility/IpplCounter.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplCounter.h b/ippl/src/Utility/IpplCounter.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplException.h b/ippl/src/Utility/IpplException.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplInfo.cpp b/ippl/src/Utility/IpplInfo.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplInfo.h b/ippl/src/Utility/IpplInfo.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplMemoryUsage.cpp b/ippl/src/Utility/IpplMemoryUsage.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplMemoryUsage.h b/ippl/src/Utility/IpplMemoryUsage.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplMessageCounter.cpp b/ippl/src/Utility/IpplMessageCounter.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplMessageCounter.h b/ippl/src/Utility/IpplMessageCounter.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplStats.cpp b/ippl/src/Utility/IpplStats.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplStats.h b/ippl/src/Utility/IpplStats.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplTimings.cpp b/ippl/src/Utility/IpplTimings.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/IpplTimings.h b/ippl/src/Utility/IpplTimings.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/NamedObj.h b/ippl/src/Utility/NamedObj.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/PAssert.cpp b/ippl/src/Utility/PAssert.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/PAssert.h b/ippl/src/Utility/PAssert.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/ParticleDebug.h b/ippl/src/Utility/ParticleDebug.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/ParticleDebug.hpp b/ippl/src/Utility/ParticleDebug.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/ParticleDebugFunctions.cpp b/ippl/src/Utility/ParticleDebugFunctions.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/ParticleDebugFunctions.h b/ippl/src/Utility/ParticleDebugFunctions.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Pool.cpp b/ippl/src/Utility/Pool.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Pool.h b/ippl/src/Utility/Pool.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Pooled.h b/ippl/src/Utility/Pooled.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Pooled.hpp b/ippl/src/Utility/Pooled.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGAssignDefs.h b/ippl/src/Utility/RNGAssignDefs.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGBitReverse.h b/ippl/src/Utility/RNGBitReverse.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGLattice.h b/ippl/src/Utility/RNGLattice.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGRand.h b/ippl/src/Utility/RNGRand.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGSimple.cpp b/ippl/src/Utility/RNGSimple.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGSimple.h b/ippl/src/Utility/RNGSimple.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGXCI.cpp b/ippl/src/Utility/RNGXCI.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGXCI.h b/ippl/src/Utility/RNGXCI.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGXDiv.cpp b/ippl/src/Utility/RNGXDiv.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RNGXDiv.h b/ippl/src/Utility/RNGXDiv.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RandomNumberGen.cpp b/ippl/src/Utility/RandomNumberGen.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RandomNumberGen.h b/ippl/src/Utility/RandomNumberGen.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RefBlock.h b/ippl/src/Utility/RefBlock.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/RefCounted.h b/ippl/src/Utility/RefCounted.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/SequenceGen.h b/ippl/src/Utility/SequenceGen.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/StaticIpplInfo.cpp b/ippl/src/Utility/StaticIpplInfo.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/StaticIpplInfo.h b/ippl/src/Utility/StaticIpplInfo.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Timer.cpp b/ippl/src/Utility/Timer.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Timer.h b/ippl/src/Utility/Timer.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Unique.cpp b/ippl/src/Utility/Unique.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Unique.h b/ippl/src/Utility/Unique.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/User.cpp b/ippl/src/Utility/User.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/User.h b/ippl/src/Utility/User.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/UserList.cpp b/ippl/src/Utility/UserList.cpp old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/UserList.h b/ippl/src/Utility/UserList.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/Vec.h b/ippl/src/Utility/Vec.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/my_auto_ptr.h b/ippl/src/Utility/my_auto_ptr.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/vmap.h b/ippl/src/Utility/vmap.h old mode 100755 new mode 100644 diff --git a/ippl/src/Utility/vmap.hpp b/ippl/src/Utility/vmap.hpp old mode 100755 new mode 100644 diff --git a/ippl/src/config.h.in b/ippl/src/config.h.in old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/.job b/ippl/test/6dtrack/.job old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/CMakeLists.txt b/ippl/test/6dtrack/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.cpp b/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.hh b/ippl/test/6dtrack/GTChargedParticles/GTChargedParticles.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTConfigure/GTConfigure.hh b/ippl/test/6dtrack/GTConfigure/GTConfigure.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/GTDistribution.cc b/ippl/test/6dtrack/GTDistribution/GTDistribution.cc old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/GTDistribution.hh b/ippl/test/6dtrack/GTDistribution/GTDistribution.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/hammersley.cpp b/ippl/test/6dtrack/GTDistribution/hammersley.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/hammersley.h b/ippl/test/6dtrack/GTDistribution/hammersley.h old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/makeranlib b/ippl/test/6dtrack/GTDistribution/makeranlib old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/ranlib.cc b/ippl/test/6dtrack/GTDistribution/ranlib.cc old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTDistribution/ranlib.h b/ippl/test/6dtrack/GTDistribution/ranlib.h old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/ACG.cpp b/ippl/test/6dtrack/GTElements/ACG.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/ACG.h b/ippl/test/6dtrack/GTElements/ACG.h old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/Elements.hh b/ippl/test/6dtrack/GTElements/Elements.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTElemData.hh b/ippl/test/6dtrack/GTElements/GTElemData.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTGenElement.hh b/ippl/test/6dtrack/GTElements/GTGenElement.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTIBS.hh b/ippl/test/6dtrack/GTElements/GTIBS.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTMultipoleMap.hh b/ippl/test/6dtrack/GTElements/GTMultipoleMap.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTRFCavityMap.hh b/ippl/test/6dtrack/GTElements/GTRFCavityMap.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTRadiation.hh b/ippl/test/6dtrack/GTElements/GTRadiation.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/GTRecquadMap.hh b/ippl/test/6dtrack/GTElements/GTRecquadMap.hh old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/IBSProcess.cpp b/ippl/test/6dtrack/GTElements/IBSProcess.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/IBSProcess.h b/ippl/test/6dtrack/GTElements/IBSProcess.h old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/Merlin/PhotonSpectrumGen.cpp b/ippl/test/6dtrack/GTElements/Merlin/PhotonSpectrumGen.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.cpp b/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.h b/ippl/test/6dtrack/GTElements/Merlin/SynchRadParticleProcess.h old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/Makefile b/ippl/test/6dtrack/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/Makefile.def b/ippl/test/6dtrack/Makefile.def old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/dsmc6d.cpp b/ippl/test/6dtrack/dsmc6d.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/lat1.dat b/ippl/test/6dtrack/lat1.dat old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/lat60.dat b/ippl/test/6dtrack/lat60.dat old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/lat61.dat b/ippl/test/6dtrack/lat61.dat old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/lat64.dat b/ippl/test/6dtrack/lat64.dat old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/lat65.dat b/ippl/test/6dtrack/lat65.dat old mode 100755 new mode 100644 diff --git a/ippl/test/6dtrack/lat66.dat b/ippl/test/6dtrack/lat66.dat old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/AmrDoxyfile b/ippl/test/AMR/AmrDoxyfile old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/AmrOpal.cpp b/ippl/test/AMR/AmrOpal.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/AmrOpal.h b/ippl/test/AMR/AmrOpal.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/AmrOpal_F.h b/ippl/test/AMR/AmrOpal_F.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/CMakeLists.txt b/ippl/test/AMR/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/Distribution.cpp b/ippl/test/AMR/Distribution.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/Distribution.h b/ippl/test/AMR/Distribution.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/H5Reader.cpp b/ippl/test/AMR/H5Reader.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/H5Reader.h b/ippl/test/AMR/H5Reader.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/MGTSolver.cpp b/ippl/test/AMR/MGTSolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/MGTSolver.h b/ippl/test/AMR/MGTSolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/README b/ippl/test/AMR/README old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/Solver.cpp b/ippl/test/AMR/Solver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/Solver.h b/ippl/test/AMR/Solver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/Tagging_nd.f90 b/ippl/test/AMR/Tagging_nd.f90 old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/AssignMultiLevelDensity.cpp b/ippl/test/AMR/amrex-only/AssignMultiLevelDensity.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/CMakeLists.txt b/ippl/test/AMR/amrex-only/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/Solver.cpp b/ippl/test/AMR/amrex-only/Solver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/Solver.h b/ippl/test/AMR/amrex-only/Solver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/inputs b/ippl/test/AMR/amrex-only/inputs old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/testDeposition.cpp b/ippl/test/AMR/amrex-only/testDeposition.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/testDepositionFail.cpp b/ippl/test/AMR/amrex-only/testDepositionFail.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/testGeometry.cpp b/ippl/test/AMR/amrex-only/testGeometry.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/amrex-only/testSolverFail.cpp b/ippl/test/AMR/amrex-only/testSolverFail.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp b/ippl/test/AMR/boxlib-amr/AmrPartBunch.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/AmrPartBunch.h b/ippl/test/AMR/boxlib-amr/AmrPartBunch.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/CMakeLists.txt b/ippl/test/AMR/boxlib-amr/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/PartBunch.h b/ippl/test/AMR/boxlib-amr/PartBunch.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/PartBunchBase.h b/ippl/test/AMR/boxlib-amr/PartBunchBase.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/PoissonProblems.cpp b/ippl/test/AMR/boxlib-amr/PoissonProblems.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/PoissonProblems.h b/ippl/test/AMR/boxlib-amr/PoissonProblems.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/error.cpp b/ippl/test/AMR/boxlib-amr/error.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/iterative.cpp b/ippl/test/AMR/boxlib-amr/iterative.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp b/ippl/test/AMR/boxlib-amr/testAmrPartBunch.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testGaussian.cpp b/ippl/test/AMR/boxlib-amr/testGaussian.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testGridSolve.cpp b/ippl/test/AMR/boxlib-amr/testGridSolve.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testH5Read.cpp b/ippl/test/AMR/boxlib-amr/testH5Read.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testHdf5.cpp b/ippl/test/AMR/boxlib-amr/testHdf5.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testMultiBunch.cpp b/ippl/test/AMR/boxlib-amr/testMultiBunch.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testOldPerformance.cpp b/ippl/test/AMR/boxlib-amr/testOldPerformance.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testOldPlasma.cpp b/ippl/test/AMR/boxlib-amr/testOldPlasma.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testPerfectLoadBalancing.cpp b/ippl/test/AMR/boxlib-amr/testPerfectLoadBalancing.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testReal.cpp b/ippl/test/AMR/boxlib-amr/testReal.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testSolver.cpp b/ippl/test/AMR/boxlib-amr/testSolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testTracker.cpp b/ippl/test/AMR/boxlib-amr/testTracker.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testUnifSphere.cpp b/ippl/test/AMR/boxlib-amr/testUnifSphere.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testUnifSphereGrid.cpp b/ippl/test/AMR/boxlib-amr/testUnifSphereGrid.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/testUniform.cpp b/ippl/test/AMR/boxlib-amr/testUniform.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/boxlib-amr/toFile.cpp b/ippl/test/AMR/boxlib-amr/toFile.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/helper_functions.h b/ippl/test/AMR/helper_functions.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/AmrParticleBase.h b/ippl/test/AMR/ippl-amr/AmrParticleBase.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/AmrParticleBase.hpp b/ippl/test/AMR/ippl-amr/AmrParticleBase.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/CMakeLists.txt b/ippl/test/AMR/ippl-amr/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/LevelNumCounter.h b/ippl/test/AMR/ippl-amr/LevelNumCounter.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/PartBunchAmr.h b/ippl/test/AMR/ippl-amr/PartBunchAmr.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/ParticleAmrLayout.h b/ippl/test/AMR/ippl-amr/ParticleAmrLayout.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp b/ippl/test/AMR/ippl-amr/ParticleAmrLayout.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/inputs b/ippl/test/AMR/ippl-amr/inputs old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testAmrPartBase.cpp b/ippl/test/AMR/ippl-amr/testAmrPartBase.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testCRTP.cpp b/ippl/test/AMR/ippl-amr/testCRTP.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testDomainTransformSolve.cpp b/ippl/test/AMR/ippl-amr/testDomainTransformSolve.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testFromH5.cpp b/ippl/test/AMR/ippl-amr/testFromH5.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testGaussian.cpp b/ippl/test/AMR/ippl-amr/testGaussian.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testInitGuessSolver.cpp b/ippl/test/AMR/ippl-amr/testInitGuessSolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testInitialBox.cpp b/ippl/test/AMR/ippl-amr/testInitialBox.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testLayout.cpp b/ippl/test/AMR/ippl-amr/testLayout.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testMultipleSources.cpp b/ippl/test/AMR/ippl-amr/testMultipleSources.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testNewTracker.cpp b/ippl/test/AMR/ippl-amr/testNewTracker.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testPerformance.cpp b/ippl/test/AMR/ippl-amr/testPerformance.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testPlasma.cpp b/ippl/test/AMR/ippl-amr/testPlasma.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testScatterAMReX.cpp b/ippl/test/AMR/ippl-amr/testScatterAMReX.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testTagging.cpp b/ippl/test/AMR/ippl-amr/testTagging.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testUnifBox.cpp b/ippl/test/AMR/ippl-amr/testUnifBox.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-amr/testUnifSphere.cpp b/ippl/test/AMR/ippl-amr/testUnifSphere.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-bunch/AmrPartBunch.h b/ippl/test/AMR/ippl-bunch/AmrPartBunch.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-bunch/CMakeLists.txt b/ippl/test/AMR/ippl-bunch/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-bunch/PartBunch.h b/ippl/test/AMR/ippl-bunch/PartBunch.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-bunch/PartBunchBase.h b/ippl/test/AMR/ippl-bunch/PartBunchBase.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-bunch/testAdapterPattern.cpp b/ippl/test/AMR/ippl-bunch/testAdapterPattern.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/ippl-bunch/testCRTP.cpp b/ippl/test/AMR/ippl-bunch/testCRTP.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/Amesos2BottomSolver.h b/ippl/test/AMR/trilinos/Amesos2BottomSolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/Amesos2BottomSolver.hpp b/ippl/test/AMR/trilinos/Amesos2BottomSolver.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrBoundary.h b/ippl/test/AMR/trilinos/AmrBoundary.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrDirichletBoundary.h b/ippl/test/AMR/trilinos/AmrDirichletBoundary.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrInterpolater.h b/ippl/test/AMR/trilinos/AmrInterpolater.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.h b/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.hpp b/ippl/test/AMR/trilinos/AmrLagrangeInterpolater.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrMultiGrid.cpp b/ippl/test/AMR/trilinos/AmrMultiGrid.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrMultiGrid.h b/ippl/test/AMR/trilinos/AmrMultiGrid.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrMultiGridCore.h b/ippl/test/AMR/trilinos/AmrMultiGridCore.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrMultiGridDefs.h b/ippl/test/AMR/trilinos/AmrMultiGridDefs.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrMultiGridLevel.h b/ippl/test/AMR/trilinos/AmrMultiGridLevel.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp b/ippl/test/AMR/trilinos/AmrMultiGridLevel.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrOpenBoundary.h b/ippl/test/AMR/trilinos/AmrOpenBoundary.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrPCInterpolater.h b/ippl/test/AMR/trilinos/AmrPCInterpolater.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrPCInterpolater.hpp b/ippl/test/AMR/trilinos/AmrPCInterpolater.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrPeriodicBoundary.h b/ippl/test/AMR/trilinos/AmrPeriodicBoundary.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrPreconditioner.h b/ippl/test/AMR/trilinos/AmrPreconditioner.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrRedistributor.cpp b/ippl/test/AMR/trilinos/AmrRedistributor.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrRedistributor.h b/ippl/test/AMR/trilinos/AmrRedistributor.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrSmoother.cpp b/ippl/test/AMR/trilinos/AmrSmoother.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrSmoother.h b/ippl/test/AMR/trilinos/AmrSmoother.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.h b/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.hpp b/ippl/test/AMR/trilinos/AmrTrilinearInterpolater.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/BelosBottomSolver.h b/ippl/test/AMR/trilinos/BelosBottomSolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/BelosBottomSolver.hpp b/ippl/test/AMR/trilinos/BelosBottomSolver.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/BottomSolver.h b/ippl/test/AMR/trilinos/BottomSolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/CMakeLists.txt b/ippl/test/AMR/trilinos/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/FFTBottomSolver.cpp b/ippl/test/AMR/trilinos/FFTBottomSolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/FFTBottomSolver.h b/ippl/test/AMR/trilinos/FFTBottomSolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/Ifpack2Preconditioner.h b/ippl/test/AMR/trilinos/Ifpack2Preconditioner.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/Ifpack2Preconditioner.hpp b/ippl/test/AMR/trilinos/Ifpack2Preconditioner.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/MueLuBottomSolver.h b/ippl/test/AMR/trilinos/MueLuBottomSolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/MueLuBottomSolver.hpp b/ippl/test/AMR/trilinos/MueLuBottomSolver.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/MueLuPreconditioner.h b/ippl/test/AMR/trilinos/MueLuPreconditioner.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/MueLuPreconditioner.hpp b/ippl/test/AMR/trilinos/MueLuPreconditioner.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/build.h b/ippl/test/AMR/trilinos/build.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testAmrMultigrid.cpp b/ippl/test/AMR/trilinos/testAmrMultigrid.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testBitPattern.cpp b/ippl/test/AMR/trilinos/testBitPattern.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testBoundaryMatrix.cpp b/ippl/test/AMR/trilinos/testBoundaryMatrix.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testBoundaryVector.cpp b/ippl/test/AMR/trilinos/testBoundaryVector.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testCopy.cpp b/ippl/test/AMR/trilinos/testCopy.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testInterpolationMatrix.cpp b/ippl/test/AMR/trilinos/testInterpolationMatrix.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testLagrange.cpp b/ippl/test/AMR/trilinos/testLagrange.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testNoFine.cpp b/ippl/test/AMR/trilinos/testNoFine.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testPoissonMatrix.cpp b/ippl/test/AMR/trilinos/testPoissonMatrix.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testRestrictionMatrix.cpp b/ippl/test/AMR/trilinos/testRestrictionMatrix.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testSmootherMatrix.cpp b/ippl/test/AMR/trilinos/testSmootherMatrix.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testSolverComparison.cpp b/ippl/test/AMR/trilinos/testSolverComparison.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testSpecialPoissonMatrix.cpp b/ippl/test/AMR/trilinos/testSpecialPoissonMatrix.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testTrilinosSolver.cpp b/ippl/test/AMR/trilinos/testTrilinosSolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/testWithFine.cpp b/ippl/test/AMR/trilinos/testWithFine.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/tools.h b/ippl/test/AMR/trilinos/tools.h old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/trilinos/trilinos2ippl.cpp b/ippl/test/AMR/trilinos/trilinos2ippl.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/AMR/writePlotFile.H b/ippl/test/AMR/writePlotFile.H old mode 100755 new mode 100644 diff --git a/ippl/test/CMakeLists.txt b/ippl/test/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/Cartesian/CMakeLists.txt b/ippl/test/Cartesian/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/Cartesian/Makefile b/ippl/test/Cartesian/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/Cartesian/TestCartesian-1.cpp b/ippl/test/Cartesian/TestCartesian-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/CMakeLists.txt b/ippl/test/CavityTrack/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/CavitySolver.cpp b/ippl/test/CavityTrack/CavitySolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/CavitySolver.h b/ippl/test/CavityTrack/CavitySolver.h old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/ChargedParticles/ChargedParticles.hh b/ippl/test/CavityTrack/ChargedParticles/ChargedParticles.hh old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Distribution/Distribution.cpp b/ippl/test/CavityTrack/Distribution/Distribution.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Distribution/Distribution.hh b/ippl/test/CavityTrack/Distribution/Distribution.hh old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Distribution/makefile b/ippl/test/CavityTrack/Distribution/makefile old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Distribution/ranlib.cc b/ippl/test/CavityTrack/Distribution/ranlib.cc old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Makefile b/ippl/test/CavityTrack/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/TestRun/fort.22 b/ippl/test/CavityTrack/TestRun/fort.22 old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/CavAccel-1.mws b/ippl/test/CavityTrack/Validation/CavAccel-1.mws old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/ReadMe b/ippl/test/CavityTrack/Validation/ReadMe old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/makePlot.glp b/ippl/test/CavityTrack/Validation/makePlot.glp old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/swk/getPosVel.swk b/ippl/test/CavityTrack/Validation/swk/getPosVel.swk old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/swk/sk-Tint.swk b/ippl/test/CavityTrack/Validation/swk/sk-Tint.swk old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/swk/sk-Tint2.swk b/ippl/test/CavityTrack/Validation/swk/sk-Tint2.swk old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/Validation/trial.mws b/ippl/test/CavityTrack/Validation/trial.mws old mode 100755 new mode 100644 diff --git a/ippl/test/CavityTrack/cavitytrack.cpp b/ippl/test/CavityTrack/cavitytrack.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/CMakeLists.txt b/ippl/test/FFT/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/Makefile b/ippl/test/FFT/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/TestA-DAccuracy.ps b/ippl/test/FFT/SeaborgRes/SPP/TestA-DAccuracy.ps old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps b/ippl/test/FFT/SeaborgRes/SPP/TestA-DSpeed.ps old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestA64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestB64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestC64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestD128.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestD128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestD256.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestD256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/data/TestD512.out b/ippl/test/FFT/SeaborgRes/SPP/data/TestD512.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl b/ippl/test/FFT/SeaborgRes/SPP/makePlot.gpl old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestA64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestB64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestC64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestD128.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestD128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestD256.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestD256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/SSP/data/TestD512.out b/ippl/test/FFT/SeaborgRes/SSP/data/TestD512.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps b/ippl/test/FFT/SeaborgRes/TestA-DAccuracy.ps old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps b/ippl/test/FFT/SeaborgRes/TestA-DSpeed.ps old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps b/ippl/test/FFT/SeaborgRes/TestA-DSpeed1.ps old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp b/ippl/test/FFT/SeaborgRes/TestFFT-PPP.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp b/ippl/test/FFT/SeaborgRes/TestFFT-SPP.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp b/ippl/test/FFT/SeaborgRes/TestFFT-SSP.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestFFT.cpp b/ippl/test/FFT/SeaborgRes/TestFFT.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/TestRC.cpp b/ippl/test/FFT/SeaborgRes/TestRC.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA1024.out b/ippl/test/FFT/SeaborgRes/data/TestA1024.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA128.out b/ippl/test/FFT/SeaborgRes/data/TestA128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA16.out b/ippl/test/FFT/SeaborgRes/data/TestA16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA256.out b/ippl/test/FFT/SeaborgRes/data/TestA256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA32.out b/ippl/test/FFT/SeaborgRes/data/TestA32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA512.out b/ippl/test/FFT/SeaborgRes/data/TestA512.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestA64.out b/ippl/test/FFT/SeaborgRes/data/TestA64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB1024.out b/ippl/test/FFT/SeaborgRes/data/TestB1024.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB128.out b/ippl/test/FFT/SeaborgRes/data/TestB128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB16.out b/ippl/test/FFT/SeaborgRes/data/TestB16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB256.out b/ippl/test/FFT/SeaborgRes/data/TestB256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB32.out b/ippl/test/FFT/SeaborgRes/data/TestB32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB512.out b/ippl/test/FFT/SeaborgRes/data/TestB512.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestB64.out b/ippl/test/FFT/SeaborgRes/data/TestB64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC1024.out b/ippl/test/FFT/SeaborgRes/data/TestC1024.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC128.out b/ippl/test/FFT/SeaborgRes/data/TestC128.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC16.out b/ippl/test/FFT/SeaborgRes/data/TestC16.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC256.out b/ippl/test/FFT/SeaborgRes/data/TestC256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC32.out b/ippl/test/FFT/SeaborgRes/data/TestC32.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC512.out b/ippl/test/FFT/SeaborgRes/data/TestC512.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestC64.out b/ippl/test/FFT/SeaborgRes/data/TestC64.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/TestD256.out b/ippl/test/FFT/SeaborgRes/data/TestD256.out old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/data/makePlot.gpl b/ippl/test/FFT/SeaborgRes/data/makePlot.gpl old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/fftspeed.cpp b/ippl/test/FFT/SeaborgRes/fftspeed.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/SeaborgRes/makePlot.gpl b/ippl/test/FFT/SeaborgRes/makePlot.gpl old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestFFT-1.cpp b/ippl/test/FFT/TestFFT-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestFFT-2.cpp b/ippl/test/FFT/TestFFT-2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestFFT-XT3.cpp b/ippl/test/FFT/TestFFT-XT3.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestFFT.cpp.org b/ippl/test/FFT/TestFFT.cpp.org old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestFFTCos.cpp b/ippl/test/FFT/TestFFTCos.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestFFTSin.cpp b/ippl/test/FFT/TestFFTSin.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/TestRC.cpp b/ippl/test/FFT/TestRC.cpp index fc1923e10..b1963f596 100644 --- a/ippl/test/FFT/TestRC.cpp +++ b/ippl/test/FFT/TestRC.cpp @@ -250,25 +250,25 @@ int main(int argc, char *argv[]) // all parallel layout, standard domain, normal axis order FieldLayout<D> layoutPPStan(ndiStandard,allParallel,vnodes); + // zeroth axis serial, standard domain, normal axis order + FieldLayout<D> layoutSPStan(ndiStandard,serialParallel,vnodes); // all parallel layout, zeroth axis half-size domain, normal axis order FieldLayout<D> layoutPPStan0h(ndiStandard0h,allParallel,vnodes); - - - FieldLayout<D> layoutSPStan(ndiStandard,serialParallel,vnodes); + // zeroth axis serial, zeroth axis half-size domain, normal axis order FieldLayout<D> layoutSPStan0h(ndiStandard0h,serialParallel,vnodes); - - + // create test Fields for complex-to-complex FFT BareField<dcomplex,D> CFieldPPStan(layoutPPStan); + BareField<dcomplex,D> CFieldSPStan(layoutSPStan); + BareField<double,D> diffFieldSPStan(layoutSPStan); // create test Fields for real-to-complex FFT BareField<double,D> RFieldSPStan(layoutSPStan); BareField<double,D> RFieldSPStan_save(layoutSPStan); - BareField<dcomplex,D> CFieldSPStan0h(layoutSPStan0h); // Rather more complete test functions (sine or cosine mode): @@ -280,7 +280,7 @@ int main(int argc, char *argv[]) yfact = 2.0*twopi/(ngrid[1]); zfact = 2.0*twopi/(ngrid[2]); kx = 1.0; ky = 2.0; kz = 32.0; // wavenumbers - msg << "Init 1 fields done ..." << endl; + CFieldPPStan[ndiStandard[0]][ndiStandard[1]][ndiStandard[2]] = sfact * ( sin( (ndiStandard[0]+1) * kx * xfact + ndiStandard[1] * ky * yfact + @@ -295,7 +295,7 @@ int main(int argc, char *argv[]) ndiStandard[1] * ky * yfact - ndiStandard[2] * kz * zfact ) ); // RC FFT tests - msg << "Init 2 fields done ..." << endl; + RFieldSPStan = real(CFieldPPStan); CFieldSPStan0h = dcomplex(0.0,0.0); @@ -321,7 +321,7 @@ int main(int argc, char *argv[]) IpplMemoryUsage::IpplMemory_p memory = IpplMemoryUsage::getInstance(); memory->sample(); writeMemoryData(os_memData, pwi, 0); - msg << "Setup FFT done ..." << endl; + for (unsigned i=0; i<nLoop; i++) { RFieldSPStan_save = RFieldSPStan; @@ -351,3 +351,50 @@ int main(int argc, char *argv[]) } + + + /* cout << "TYPEINFO:" << endl; + cout << typeid(RFieldSPStan[0][0][0]).name() << endl; + cout << typeid(CFieldPPStan[0][0][0]).name() << endl; + */ + + /* + for(int x = ndiStandard[0].first(); x <= ndiStandard[0].last(); x++) { + for(int y = ndiStandard[1].first(); y <= ndiStandard[1].last(); y++) { + for(int z = ndiStandard[2].first(); z <= ndiStandard[2].last(); z++) { + RFieldSPStan[x][y][z] = real(CFieldPPStan[x][y][z].get()); + } + } + } + */ + + + // Inform fo2(NULL,"FFTrealField.dat",Inform::OVERWRITE); + + + + //double total_time = 0; + //total_time+= timer.cpu_time(); + /* + Inform fo2(NULL,"FFTrealResult.dat",Inform::OVERWRITE); + for(int x = ndiStandard[0].first(); x <= ndiStandard[0].last(); x++) { + for(int y = ndiStandard[1].first(); y <= ndiStandard[1].last(); y++) { + for(int z = ndiStandard[2].first(); z <= ndiStandard[2].last(); z++) { + fo2 << x << " " << y << " " << z << " " << RFieldSPStan[x][y][z].get() << endl; + } + } + } + */ + + +/*************************************************************************** + * $RCSfile: TestRC.cpp,v $ $Author: adelmann $ + * $Revision: 1.1.1.1 $ $Date: 2003/01/23 07:40:36 $ + ***************************************************************************/ + +/*************************************************************************** + * $RCSfile: addheaderfooter,v $ $Author: adelmann $ + * $Revision: 1.1.1.1 $ $Date: 2003/01/23 07:40:17 $ + * IPPL_VERSION_ID: $Id: addheaderfooter,v 1.1.1.1 2003/01/23 07:40:17 adelmann Exp $ + ***************************************************************************/ + diff --git a/ippl/test/FFT/TestRCMIC.cpp b/ippl/test/FFT/TestRCMIC.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/fftspeed.cpp b/ippl/test/FFT/fftspeed.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/nodefile b/ippl/test/FFT/nodefile old mode 100755 new mode 100644 diff --git a/ippl/test/FFT/run b/ippl/test/FFT/run old mode 100755 new mode 100644 diff --git a/ippl/test/Hal/CMakeLists.txt b/ippl/test/Hal/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/Hal/Makefile b/ippl/test/Hal/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/Hal/yfld_q1.cpp b/ippl/test/Hal/yfld_q1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/Hal/yfld_q1_err.txt b/ippl/test/Hal/yfld_q1_err.txt old mode 100755 new mode 100644 diff --git a/ippl/test/Hal/yfld_q2.cpp b/ippl/test/Hal/yfld_q2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/Makefile.def b/ippl/test/Makefile.def old mode 100755 new mode 100644 diff --git a/ippl/test/PwrSpec/CMakeLists.txt b/ippl/test/PwrSpec/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/PwrSpec/Makefile b/ippl/test/PwrSpec/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/PwrSpec/PwrSpec.cpp b/ippl/test/PwrSpec/PwrSpec.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/PwrSpec/PwrSpec.h b/ippl/test/PwrSpec/PwrSpec.h old mode 100755 new mode 100644 diff --git a/ippl/test/PwrSpec/testPwrSpec.cpp b/ippl/test/PwrSpec/testPwrSpec.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/adaTests/CMakeLists.txt b/ippl/test/adaTests/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/adaTests/Makefile b/ippl/test/adaTests/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/adaTests/TestDot1.cpp b/ippl/test/adaTests/TestDot1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/adaTests/TestDot2.cpp b/ippl/test/adaTests/TestDot2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/.depend b/ippl/test/hdf5/.depend old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/CMakeLists.txt b/ippl/test/hdf5/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/Makefile b/ippl/test/hdf5/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/hdf5para-1.inp b/ippl/test/hdf5/hdf5para-1.inp old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/hdf5para-2.inp b/ippl/test/hdf5/hdf5para-2.inp old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/hdf5read-1.cpp b/ippl/test/hdf5/hdf5read-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/hdf5write-1.cpp b/ippl/test/hdf5/hdf5write-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/hdf5/testHdf5-1.cpp b/ippl/test/hdf5/testHdf5-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/nok/CMakeLists.txt b/ippl/test/nok/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/nok/t3.cpp b/ippl/test/nok/t3.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/2ddens.cpp b/ippl/test/parallel/2ddens.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/CMakeLists.txt b/ippl/test/parallel/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/Makefile b/ippl/test/parallel/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/dualmpi.cpp b/ippl/test/parallel/dualmpi.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/reduce-1.cpp b/ippl/test/parallel/reduce-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/reduce-2.cpp b/ippl/test/parallel/reduce-2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/parallel/volley.cpp b/ippl/test/parallel/volley.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/1dperiodic.cpp b/ippl/test/particle/1dperiodic.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/CMakeLists.txt b/ippl/test/particle/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/particle/CacheTest.cpp b/ippl/test/particle/CacheTest.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/ChargedParticleFactory.hpp b/ippl/test/particle/ChargedParticleFactory.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/DiscParticle.cpp b/ippl/test/particle/DiscParticle.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/FFTFieldSolver.cpp b/ippl/test/particle/FFTFieldSolver.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/FieldCompare.cpp b/ippl/test/particle/FieldCompare.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/Makefile b/ippl/test/particle/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/particle/PIC2d.cpp b/ippl/test/particle/PIC2d.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/PIC3d.cpp b/ippl/test/particle/PIC3d.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/PIC3dBCo-p.cpp b/ippl/test/particle/PIC3dBCo-p.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/PIC3dBCo-p.cpp.nok b/ippl/test/particle/PIC3dBCo-p.cpp.nok old mode 100755 new mode 100644 diff --git a/ippl/test/particle/PairTest.cpp b/ippl/test/particle/PairTest.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/VTKFieldWriterParallel.hpp b/ippl/test/particle/VTKFieldWriterParallel.hpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/chsr-1.cpp b/ippl/test/particle/chsr-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/chsr-2.cpp b/ippl/test/particle/chsr-2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/cref.cpp b/ippl/test/particle/cref.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/interpolate.cpp b/ippl/test/particle/interpolate.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/loadbalance.cpp b/ippl/test/particle/loadbalance.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/neighNodeTest1.cpp b/ippl/test/particle/neighNodeTest1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/nodefile b/ippl/test/particle/nodefile old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3d.cpp b/ippl/test/particle/p3m3d.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dHeating.cpp b/ippl/test/particle/p3m3dHeating.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dMicrobunching.cpp b/ippl/test/particle/p3m3dMicrobunching.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dRegressionTests.cpp b/ippl/test/particle/p3m3dRegressionTests.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dTwoStream.cpp b/ippl/test/particle/p3m3dTwoStream.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dTwoStreamParallel.cpp b/ippl/test/particle/p3m3dTwoStreamParallel.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dplot.p b/ippl/test/particle/p3m3dplot.p old mode 100755 new mode 100644 diff --git a/ippl/test/particle/p3m3dreadme.txt b/ippl/test/particle/p3m3dreadme.txt old mode 100755 new mode 100644 diff --git a/ippl/test/particle/parexp.cpp b/ippl/test/particle/parexp.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/pbconds.cpp b/ippl/test/particle/pbconds.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/pbconds3D.cpp b/ippl/test/particle/pbconds3D.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/pbconds_vis.cpp b/ippl/test/particle/pbconds_vis.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/pdbtest.cpp b/ippl/test/particle/pdbtest.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/run b/ippl/test/particle/run old mode 100755 new mode 100644 diff --git a/ippl/test/particle/salman-1.cpp b/ippl/test/particle/salman-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/spatial.cpp b/ippl/test/particle/spatial.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/spatial.cpp.org b/ippl/test/particle/spatial.cpp.org old mode 100755 new mode 100644 diff --git a/ippl/test/particle/test-scatter-1.cpp b/ippl/test/particle/test-scatter-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/test-update-1.cpp b/ippl/test/particle/test-update-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/test-update-1.sge b/ippl/test/particle/test-update-1.sge old mode 100755 new mode 100644 diff --git a/ippl/test/particle/typtest.cpp b/ippl/test/particle/typtest.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/uniform.cpp b/ippl/test/particle/uniform.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/particle/vlasovBB1D.cpp b/ippl/test/particle/vlasovBB1D.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/poissonsolvers/CMakeLists.txt b/ippl/test/poissonsolvers/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/poissonsolvers/Makefile b/ippl/test/poissonsolvers/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/poissonsolvers/ReadMe b/ippl/test/poissonsolvers/ReadMe old mode 100755 new mode 100644 diff --git a/ippl/test/poissonsolvers/data1.dat b/ippl/test/poissonsolvers/data1.dat old mode 100755 new mode 100644 diff --git a/ippl/test/poissonsolvers/femmgTest.cpp b/ippl/test/poissonsolvers/femmgTest.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/.depend b/ippl/test/simple-new/.depend old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/CMakeLists.txt b/ippl/test/simple-new/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/Makefile b/ippl/test/simple-new/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/id-test1.cpp b/ippl/test/simple-new/id-test1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/memcheck-1.cpp b/ippl/test/simple-new/memcheck-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t1.cpp b/ippl/test/simple-new/t1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t2.cpp b/ippl/test/simple-new/t2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t3.cpp b/ippl/test/simple-new/t3.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t4.cpp b/ippl/test/simple-new/t4.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t5.cpp b/ippl/test/simple-new/t5.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t6.cpp b/ippl/test/simple-new/t6.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t7.cpp b/ippl/test/simple-new/t7.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple-new/t8.cpp b/ippl/test/simple-new/t8.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/.depend b/ippl/test/simple/.depend old mode 100755 new mode 100644 diff --git a/ippl/test/simple/2ddiffusion-1.cpp b/ippl/test/simple/2ddiffusion-1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/CMakeLists.txt b/ippl/test/simple/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/simple/Clock.h b/ippl/test/simple/Clock.h old mode 100755 new mode 100644 diff --git a/ippl/test/simple/FVecOps.cpp b/ippl/test/simple/FVecOps.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/Makefile b/ippl/test/simple/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/simple/ScalarAdvection.cpp b/ippl/test/simple/ScalarAdvection.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/Slice.cpp b/ippl/test/simple/Slice.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestAverageVC_CV.cpp b/ippl/test/simple/TestAverageVC_CV.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestBC.cpp b/ippl/test/simple/TestBC.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestCartesianCentering.cpp b/ippl/test/simple/TestCartesianCentering.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestEureka.cpp b/ippl/test/simple/TestEureka.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestFieldDebug.cpp b/ippl/test/simple/TestFieldDebug.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestFieldDebug2.cpp b/ippl/test/simple/TestFieldDebug2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestParticleDebug.cpp b/ippl/test/simple/TestParticleDebug.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestParticleDebugParallel.cpp b/ippl/test/simple/TestParticleDebugParallel.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestPeriodicBC.cpp b/ippl/test/simple/TestPeriodicBC.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestPeriodicBC.txt b/ippl/test/simple/TestPeriodicBC.txt old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestPeriodicBCGuardCell1.txt b/ippl/test/simple/TestPeriodicBCGuardCell1.txt old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestPeriodicBCGuardCell2.txt b/ippl/test/simple/TestPeriodicBCGuardCell2.txt old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestScalarIndexing.cpp b/ippl/test/simple/TestScalarIndexing.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/TestTensorUnaryOps.cpp b/ippl/test/simple/TestTensorUnaryOps.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/balance.cpp b/ippl/test/simple/balance.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/bc.cpp b/ippl/test/simple/bc.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/bc2.cpp b/ippl/test/simple/bc2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/bc3.cpp b/ippl/test/simple/bc3.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/bc_convert.cpp b/ippl/test/simple/bc_convert.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/bool.cpp b/ippl/test/simple/bool.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/component.cpp b/ippl/test/simple/component.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/compressed.cpp b/ippl/test/simple/compressed.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/conejo_balance.cpp b/ippl/test/simple/conejo_balance.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/ctoc.cpp b/ippl/test/simple/ctoc.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/cv.cpp b/ippl/test/simple/cv.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof2d_a.cpp b/ippl/test/simple/doof2d_a.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof2d_complex.cpp b/ippl/test/simple/doof2d_complex.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof2d_file.cpp b/ippl/test/simple/doof2d_file.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof2d_simple.cpp b/ippl/test/simple/doof2d_simple.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof2d_vis.cpp b/ippl/test/simple/doof2d_vis.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof3d_file.cpp b/ippl/test/simple/doof3d_file.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/doof3d_vis.cpp b/ippl/test/simple/doof3d_vis.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/fermi-dirac-field.cpp b/ippl/test/simple/fermi-dirac-field.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/fivefields.cpp b/ippl/test/simple/fivefields.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/float.cpp b/ippl/test/simple/float.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/flyercode.cpp b/ippl/test/simple/flyercode.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/funcface.cpp b/ippl/test/simple/funcface.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/gcprint.cpp b/ippl/test/simple/gcprint.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/itercompress.cpp b/ippl/test/simple/itercompress.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/left.cpp b/ippl/test/simple/left.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/minmax.cpp b/ippl/test/simple/minmax.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/patches.cpp b/ippl/test/simple/patches.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/reduce.cpp b/ippl/test/simple/reduce.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/reduceloc.cpp b/ippl/test/simple/reduceloc.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/repartition.cpp b/ippl/test/simple/repartition.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/repartition.cpp.org b/ippl/test/simple/repartition.cpp.org old mode 100755 new mode 100644 diff --git a/ippl/test/simple/send b/ippl/test/simple/send old mode 100755 new mode 100644 diff --git a/ippl/test/simple/single.cpp b/ippl/test/simple/single.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/slices.cpp b/ippl/test/simple/slices.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/soffset.cpp b/ippl/test/simple/soffset.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/subdivide.cpp b/ippl/test/simple/subdivide.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/subreadtest.cpp b/ippl/test/simple/subreadtest.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t.cpp b/ippl/test/simple/t.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t1.cpp b/ippl/test/simple/t1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t2.cpp b/ippl/test/simple/t2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t3.cpp b/ippl/test/simple/t3.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t4.cpp b/ippl/test/simple/t4.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t5.cpp b/ippl/test/simple/t5.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t6.cpp b/ippl/test/simple/t6.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t7.cpp b/ippl/test/simple/t7.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/t8.cpp b/ippl/test/simple/t8.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/transpose.cpp b/ippl/test/simple/transpose.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/tv.cpp b/ippl/test/simple/tv.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/tz.cpp b/ippl/test/simple/tz.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/simple/vc.cpp b/ippl/test/simple/vc.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/CMakeLists.txt b/ippl/test/sindex/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/Makefile b/ippl/test/sindex/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/TestSIndex.cpp b/ippl/test/sindex/TestSIndex.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/compsindex.cpp b/ippl/test/sindex/compsindex.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/sindex.cpp b/ippl/test/sindex/sindex.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/subfield.cpp b/ippl/test/sindex/subfield.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/sindex/vertcell.cpp b/ippl/test/sindex/vertcell.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/CMakeLists.txt b/ippl/test/speed/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/speed/Makefile b/ippl/test/speed/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/speed/diskfield.cpp b/ippl/test/speed/diskfield.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/gcspeed.cpp b/ippl/test/speed/gcspeed.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/make.out b/ippl/test/speed/make.out old mode 100755 new mode 100644 diff --git a/ippl/test/speed/particle_simple.cpp b/ippl/test/speed/particle_simple.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/reducespeed.cpp b/ippl/test/speed/reducespeed.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/speed1.cpp b/ippl/test/speed/speed1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/stencil1.cpp b/ippl/test/speed/stencil1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/speed/stencil_c.c b/ippl/test/speed/stencil_c.c old mode 100755 new mode 100644 diff --git a/ippl/test/toyfdtf/CMakeLists.txt b/ippl/test/toyfdtf/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/toyfdtf/Makefile b/ippl/test/toyfdtf/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.cpp b/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h b/ippl/test/toyfdtf/ToyFDTD-DataSink/DataSink.h old mode 100755 new mode 100644 diff --git a/ippl/test/toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp b/ippl/test/toyfdtf/ToyFDTD-DataSink/ipplToyFDTD2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/toyfdtf/ipplToyFDTD2.cpp b/ippl/test/toyfdtf/ipplToyFDTD2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/CMakeLists.txt b/ippl/test/ttrack/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/Doxyfile b/ippl/test/ttrack/Doxyfile old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.cpp b/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.hh b/ippl/test/ttrack/GTChargedParticles/GTChargedParticles.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTConfigure/GTConfigure.hh b/ippl/test/ttrack/GTConfigure/GTConfigure.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTDistribution/GTDistribution.cc b/ippl/test/ttrack/GTDistribution/GTDistribution.cc old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTDistribution/GTDistribution.hh b/ippl/test/ttrack/GTDistribution/GTDistribution.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTDistribution/hammersley.cpp b/ippl/test/ttrack/GTDistribution/hammersley.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTDistribution/hammersley.h b/ippl/test/ttrack/GTDistribution/hammersley.h old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTDistribution/ranlib.cc b/ippl/test/ttrack/GTDistribution/ranlib.cc old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTDistribution/ranlib.h b/ippl/test/ttrack/GTDistribution/ranlib.h old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/ACG.cpp b/ippl/test/ttrack/GTElements/ACG.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/ACG.h b/ippl/test/ttrack/GTElements/ACG.h old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/Elements.hh b/ippl/test/ttrack/GTElements/Elements.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTElemData.hh b/ippl/test/ttrack/GTElements/GTElemData.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTGenElement.hh b/ippl/test/ttrack/GTElements/GTGenElement.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTIBS.hh b/ippl/test/ttrack/GTElements/GTIBS.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTMultipoleMap.hh b/ippl/test/ttrack/GTElements/GTMultipoleMap.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTRFCavityMap.hh b/ippl/test/ttrack/GTElements/GTRFCavityMap.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTRadiation.hh b/ippl/test/ttrack/GTElements/GTRadiation.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/GTRecquadMap.hh b/ippl/test/ttrack/GTElements/GTRecquadMap.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/IBSProcess.cpp b/ippl/test/ttrack/GTElements/IBSProcess.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/IBSProcess.h b/ippl/test/ttrack/GTElements/IBSProcess.h old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/Merlin/PhotonSpectrumGen.cpp b/ippl/test/ttrack/GTElements/Merlin/PhotonSpectrumGen.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.cpp b/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.h b/ippl/test/ttrack/GTElements/Merlin/SynchRadParticleProcess.h old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTUtilities/GTConst.hh b/ippl/test/ttrack/GTUtilities/GTConst.hh old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTUtilities/GTPhysics.cc b/ippl/test/ttrack/GTUtilities/GTPhysics.cc old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/GTUtilities/GTPhysics.h b/ippl/test/ttrack/GTUtilities/GTPhysics.h old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/Makefile b/ippl/test/ttrack/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/Makefile.def b/ippl/test/ttrack/Makefile.def old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/README b/ippl/test/ttrack/README old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/aur-1.dat b/ippl/test/ttrack/aur-1.dat old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/dsmc.cpp b/ippl/test/ttrack/dsmc.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/direct.tex b/ippl/test/ttrack/report/direct.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/divrad.png b/ippl/test/ttrack/report/divrad.png old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/feynman.png b/ippl/test/ttrack/report/feynman.png old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/future.tex b/ippl/test/ttrack/report/future.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/implementation.tex b/ippl/test/ttrack/report/implementation.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/introduction.tex b/ippl/test/ttrack/report/introduction.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/literature.tex b/ippl/test/ttrack/report/literature.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/longtermbehavior.png b/ippl/test/ttrack/report/longtermbehavior.png old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/aurlong.pdf b/ippl/test/ttrack/report/presentation/aurlong.pdf old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/inter.pdf b/ippl/test/ttrack/report/presentation/inter.pdf old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/lowemi.dat b/ippl/test/ttrack/report/presentation/lowemi.dat old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/presentation.tex b/ippl/test/ttrack/report/presentation/presentation.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/scaling.dat b/ippl/test/ttrack/report/presentation/scaling.dat old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/sls-acceptancevslifetime.dat b/ippl/test/ttrack/report/presentation/sls-acceptancevslifetime.dat old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/presentation/sls-longterm.pdf b/ippl/test/ttrack/report/presentation/sls-longterm.pdf old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/radius.png b/ippl/test/ttrack/report/radius.png old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/radius2.png b/ippl/test/ttrack/report/radius2.png old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/report.tex b/ippl/test/ttrack/report/report.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/results.tex b/ippl/test/ttrack/report/results.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/simulation.tex b/ippl/test/ttrack/report/simulation.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/report/theory.tex b/ippl/test/ttrack/report/theory.tex old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/sls-1.dat b/ippl/test/ttrack/sls-1.dat old mode 100755 new mode 100644 diff --git a/ippl/test/ttrack/touscheklifetime.nb b/ippl/test/ttrack/touscheklifetime.nb old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/.depend b/ippl/test/twostream-1/.depend old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/CMakeLists.txt b/ippl/test/twostream-1/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Makefile b/ippl/test/twostream-1/Makefile old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.h b/ippl/test/twostream-1/Utility/Algorithms/AbstractMapper.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.h b/ippl/test/twostream-1/Utility/Algorithms/AbstractTracker.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.cpp b/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.h b/ippl/test/twostream-1/Utility/Algorithms/DefaultVisitor.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Flagger.cpp b/ippl/test/twostream-1/Utility/Algorithms/Flagger.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Flagger.h b/ippl/test/twostream-1/Utility/Algorithms/Flagger.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.h b/ippl/test/twostream-1/Utility/Algorithms/IdealMapper.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.h b/ippl/test/twostream-1/Utility/Algorithms/LinearMapper.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.cpp b/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.h b/ippl/test/twostream-1/Utility/Algorithms/MapIntegrator.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Mapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/Mapper.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Mapper.h b/ippl/test/twostream-1/Utility/Algorithms/Mapper.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.h b/ippl/test/twostream-1/Utility/Algorithms/OrbitTracker.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartBunch.cpp b/ippl/test/twostream-1/Utility/Algorithms/PartBunch.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartBunch.h b/ippl/test/twostream-1/Utility/Algorithms/PartBunch.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartData.cpp b/ippl/test/twostream-1/Utility/Algorithms/PartData.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/PartData.h b/ippl/test/twostream-1/Utility/Algorithms/PartData.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Particle.cpp b/ippl/test/twostream-1/Utility/Algorithms/Particle.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Particle.h b/ippl/test/twostream-1/Utility/Algorithms/Particle.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Surveyor.cpp b/ippl/test/twostream-1/Utility/Algorithms/Surveyor.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Surveyor.h b/ippl/test/twostream-1/Utility/Algorithms/Surveyor.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.cpp b/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.h b/ippl/test/twostream-1/Utility/Algorithms/ThinMapper.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.h b/ippl/test/twostream-1/Utility/Algorithms/ThinTracker.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.cpp b/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.h b/ippl/test/twostream-1/Utility/Algorithms/TrackIntegrator.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Tracker.cpp b/ippl/test/twostream-1/Utility/Algorithms/Tracker.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/Tracker.h b/ippl/test/twostream-1/Utility/Algorithms/Tracker.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Algorithms/rbendmap.h b/ippl/test/twostream-1/Utility/Algorithms/rbendmap.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/MemoryManagement/OwnPtr.h b/ippl/test/twostream-1/Utility/MemoryManagement/OwnPtr.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/MemoryManagement/Pointer.h b/ippl/test/twostream-1/Utility/MemoryManagement/Pointer.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/MemoryManagement/RCObject.h b/ippl/test/twostream-1/Utility/MemoryManagement/RCObject.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/AbsFileStream.cpp b/ippl/test/twostream-1/Utility/Parser/AbsFileStream.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/AbsFileStream.h b/ippl/test/twostream-1/Utility/Parser/AbsFileStream.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/ClassicParser.cpp b/ippl/test/twostream-1/Utility/Parser/ClassicParser.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/ClassicParser.h b/ippl/test/twostream-1/Utility/Parser/ClassicParser.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/FileStream.cpp b/ippl/test/twostream-1/Utility/Parser/FileStream.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/FileStream.h b/ippl/test/twostream-1/Utility/Parser/FileStream.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/Parser.cpp b/ippl/test/twostream-1/Utility/Parser/Parser.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/Parser.h b/ippl/test/twostream-1/Utility/Parser/Parser.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/SimpleStatement.cpp b/ippl/test/twostream-1/Utility/Parser/SimpleStatement.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/SimpleStatement.h b/ippl/test/twostream-1/Utility/Parser/SimpleStatement.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/Statement.cpp b/ippl/test/twostream-1/Utility/Parser/Statement.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/Statement.h b/ippl/test/twostream-1/Utility/Parser/Statement.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/StringStream.cpp b/ippl/test/twostream-1/Utility/Parser/StringStream.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/StringStream.h b/ippl/test/twostream-1/Utility/Parser/StringStream.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/TerminalStream.cpp b/ippl/test/twostream-1/Utility/Parser/TerminalStream.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/TerminalStream.h b/ippl/test/twostream-1/Utility/Parser/TerminalStream.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/Token.cpp b/ippl/test/twostream-1/Utility/Parser/Token.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/Token.h b/ippl/test/twostream-1/Utility/Parser/Token.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/TokenStream.cpp b/ippl/test/twostream-1/Utility/Parser/TokenStream.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Parser/TokenStream.h b/ippl/test/twostream-1/Utility/Parser/TokenStream.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Physics/Physics.cpp b/ippl/test/twostream-1/Utility/Physics/Physics.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Physics/Physics.h b/ippl/test/twostream-1/Utility/Physics/Physics.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.cpp b/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.h b/ippl/test/twostream-1/Utility/Utilities/ArithmeticError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/AttributeError.cpp b/ippl/test/twostream-1/Utility/Utilities/AttributeError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/AttributeError.h b/ippl/test/twostream-1/Utility/Utilities/AttributeError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ClassicException.cpp b/ippl/test/twostream-1/Utility/Utilities/ClassicException.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ClassicException.h b/ippl/test/twostream-1/Utility/Utilities/ClassicException.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.cpp b/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.h b/ippl/test/twostream-1/Utility/Utilities/ComplexErrorFun.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.cpp b/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.h b/ippl/test/twostream-1/Utility/Utilities/ConvergenceError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/DivideError.cpp b/ippl/test/twostream-1/Utility/Utilities/DivideError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/DivideError.h b/ippl/test/twostream-1/Utility/Utilities/DivideError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/DomainError.cpp b/ippl/test/twostream-1/Utility/Utilities/DomainError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/DomainError.h b/ippl/test/twostream-1/Utility/Utilities/DomainError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.cpp b/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.h b/ippl/test/twostream-1/Utility/Utilities/EigenvalueError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/FormatError.cpp b/ippl/test/twostream-1/Utility/Utilities/FormatError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/FormatError.h b/ippl/test/twostream-1/Utility/Utilities/FormatError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/Gauss.cpp b/ippl/test/twostream-1/Utility/Utilities/Gauss.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/Gauss.h b/ippl/test/twostream-1/Utility/Utilities/Gauss.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/InverseGauss.cpp b/ippl/test/twostream-1/Utility/Utilities/InverseGauss.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/InverseGauss.h b/ippl/test/twostream-1/Utility/Utilities/InverseGauss.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/LogicalError.cpp b/ippl/test/twostream-1/Utility/Utilities/LogicalError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/LogicalError.h b/ippl/test/twostream-1/Utility/Utilities/LogicalError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/NormalFormError.cpp b/ippl/test/twostream-1/Utility/Utilities/NormalFormError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/NormalFormError.h b/ippl/test/twostream-1/Utility/Utilities/NormalFormError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/OverflowError.cpp b/ippl/test/twostream-1/Utility/Utilities/OverflowError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/OverflowError.h b/ippl/test/twostream-1/Utility/Utilities/OverflowError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ParseError.cpp b/ippl/test/twostream-1/Utility/Utilities/ParseError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/ParseError.h b/ippl/test/twostream-1/Utility/Utilities/ParseError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/Random.cpp b/ippl/test/twostream-1/Utility/Utilities/Random.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/Random.h b/ippl/test/twostream-1/Utility/Utilities/Random.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/RangeError.cpp b/ippl/test/twostream-1/Utility/Utilities/RangeError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/RangeError.h b/ippl/test/twostream-1/Utility/Utilities/RangeError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.cpp b/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.h b/ippl/test/twostream-1/Utility/Utilities/SingularMatrixError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/SizeError.cpp b/ippl/test/twostream-1/Utility/Utilities/SizeError.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/SizeError.h b/ippl/test/twostream-1/Utility/Utilities/SizeError.h old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/User0.cpp b/ippl/test/twostream-1/Utility/Utilities/User0.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/User1.cpp b/ippl/test/twostream-1/Utility/Utilities/User1.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/Utility/Utilities/User2.cpp b/ippl/test/twostream-1/Utility/Utilities/User2.cpp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/anal.gpl b/ippl/test/twostream-1/anal.gpl old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/anal.kumac b/ippl/test/twostream-1/anal.kumac old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/analtest.gpl b/ippl/test/twostream-1/analtest.gpl old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/constfoc-1.inp b/ippl/test/twostream-1/constfoc-1.inp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/data1.dat b/ippl/test/twostream-1/data1.dat old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/data2.dat b/ippl/test/twostream-1/data2.dat old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/driftsc-1.inp b/ippl/test/twostream-1/driftsc-1.inp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/driftsc-2.inp b/ippl/test/twostream-1/driftsc-2.inp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/test-1.inp b/ippl/test/twostream-1/test-1.inp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/test-2.inp b/ippl/test/twostream-1/test-2.inp old mode 100755 new mode 100644 diff --git a/ippl/test/twostream-1/twostream-2.cpp b/ippl/test/twostream-1/twostream-2.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/.gitignore b/opt-pilot/.gitignore old mode 100755 new mode 100644 diff --git a/opt-pilot/CMakeLists.txt b/opt-pilot/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/CommSplitter.h b/opt-pilot/Comm/CommSplitter.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/MasterGraph/NDimMesh.h b/opt-pilot/Comm/MasterGraph/NDimMesh.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/MasterGraph/NoMasterGraph.h b/opt-pilot/Comm/MasterGraph/NoMasterGraph.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/MasterGraph/SocialNetworkGraph.h b/opt-pilot/Comm/MasterGraph/SocialNetworkGraph.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/MasterNode.h b/opt-pilot/Comm/MasterNode.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Splitter/GeometricStrategy.h b/opt-pilot/Comm/Splitter/GeometricStrategy.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Splitter/ManyMasterSplit.h b/opt-pilot/Comm/Splitter/ManyMasterSplit.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Splitter/RandomStrategy.h b/opt-pilot/Comm/Splitter/RandomStrategy.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Splitter/ReadSplitFromFile.h b/opt-pilot/Comm/Splitter/ReadSplitFromFile.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Splitter/SplitStrategy.h b/opt-pilot/Comm/Splitter/SplitStrategy.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Topology/CommTopology.h b/opt-pilot/Comm/Topology/CommTopology.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/Topology/NoCommTopology.h b/opt-pilot/Comm/Topology/NoCommTopology.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Comm/types.h b/opt-pilot/Comm/types.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Doxyfile b/opt-pilot/Doxyfile old mode 100755 new mode 100644 diff --git a/opt-pilot/Drivers/CMakeLists.txt b/opt-pilot/Drivers/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Drivers/pisa-opal/CMakeLists.txt b/opt-pilot/Drivers/pisa-opal/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Drivers/pisa-opal/pisa-opal.cpp b/opt-pilot/Drivers/pisa-opal/pisa-opal.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Drivers/pisa-standalone/CMakeLists.txt b/opt-pilot/Drivers/pisa-standalone/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Drivers/pisa-standalone/pisa-standalone.cpp b/opt-pilot/Drivers/pisa-standalone/pisa-standalone.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/CMakeLists.txt b/opt-pilot/Expression/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Expression.h b/opt-pilot/Expression/Expression.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/FromFile.cpp b/opt-pilot/Expression/FromFile.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/FromFile.h b/opt-pilot/Expression/FromFile.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/GlobalFunctions.h b/opt-pilot/Expression/GlobalFunctions.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/annotation.hpp b/opt-pilot/Expression/Parser/annotation.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/ast.hpp b/opt-pilot/Expression/Parser/ast.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/error_handler.hpp b/opt-pilot/Expression/Parser/error_handler.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/evaluator.cpp b/opt-pilot/Expression/Parser/evaluator.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/evaluator.hpp b/opt-pilot/Expression/Parser/evaluator.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/expression.cpp b/opt-pilot/Expression/Parser/expression.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/expression.hpp b/opt-pilot/Expression/Parser/expression.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/expression_def.hpp b/opt-pilot/Expression/Parser/expression_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/function.hpp b/opt-pilot/Expression/Parser/function.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/requirements.hpp b/opt-pilot/Expression/Parser/requirements.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/Parser/skipper.hpp b/opt-pilot/Expression/Parser/skipper.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/ProbeVariable.h b/opt-pilot/Expression/ProbeVariable.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/PythonExpr.h b/opt-pilot/Expression/PythonExpr.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/RadialPeak.cpp b/opt-pilot/Expression/RadialPeak.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/RadialPeak.h b/opt-pilot/Expression/RadialPeak.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/SDDSVariable.h b/opt-pilot/Expression/SDDSVariable.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/SumErrSq.cpp b/opt-pilot/Expression/SumErrSq.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/SumErrSq.h b/opt-pilot/Expression/SumErrSq.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/SumErrSqRadialPeak.cpp b/opt-pilot/Expression/SumErrSqRadialPeak.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Expression/SumErrSqRadialPeak.h b/opt-pilot/Expression/SumErrSqRadialPeak.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/BlendCrossover.h b/opt-pilot/Optimizer/EA/BlendCrossover.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/FixedPisaNsga2.h b/opt-pilot/Optimizer/EA/FixedPisaNsga2.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc b/opt-pilot/Optimizer/EA/FixedPisaNsga2.tcc old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/IndependentBitMutation.h b/opt-pilot/Optimizer/EA/IndependentBitMutation.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/Individual.h b/opt-pilot/Optimizer/EA/Individual.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/NaiveOnePointCrossover.h b/opt-pilot/Optimizer/EA/NaiveOnePointCrossover.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/NaiveUniformCrossover.h b/opt-pilot/Optimizer/EA/NaiveUniformCrossover.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/OneBitMutation.h b/opt-pilot/Optimizer/EA/OneBitMutation.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/Population.h b/opt-pilot/Optimizer/EA/Population.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/SimulatedBinaryCrossover.h b/opt-pilot/Optimizer/EA/SimulatedBinaryCrossover.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/EA/Variator.h b/opt-pilot/Optimizer/EA/Variator.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Optimizer/Optimizer.h b/opt-pilot/Optimizer/Optimizer.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Pilot/Pilot.h b/opt-pilot/Pilot/Pilot.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Pilot/Poller.h b/opt-pilot/Pilot/Poller.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Pilot/Worker.h b/opt-pilot/Pilot/Worker.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Problems/FON.h b/opt-pilot/Problems/FON.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Problems/ProblemInterface.h b/opt-pilot/Problems/ProblemInterface.h old mode 100755 new mode 100644 diff --git a/opt-pilot/README.mkd b/opt-pilot/README.mkd old mode 100755 new mode 100644 diff --git a/opt-pilot/Simulation/FunctionEvaluator.cpp b/opt-pilot/Simulation/FunctionEvaluator.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Simulation/FunctionEvaluator.h b/opt-pilot/Simulation/FunctionEvaluator.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Simulation/GenerateOpalSimulation.h b/opt-pilot/Simulation/GenerateOpalSimulation.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Simulation/Simulation.h b/opt-pilot/Simulation/Simulation.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/CMakeLists.txt b/opt-pilot/Tests/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/CmdArgumentsTest.cpp b/opt-pilot/Tests/CmdArgumentsTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/ExpressionTest.cpp b/opt-pilot/Tests/ExpressionTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/FromFileExpressionTest.cpp b/opt-pilot/Tests/FromFileExpressionTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/HashNameGeneratorTest.cpp b/opt-pilot/Tests/HashNameGeneratorTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/Homotopy/Problem.in b/opt-pilot/Tests/Homotopy/Problem.in old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/IndividualTest.cpp b/opt-pilot/Tests/IndividualTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/MPIHelperTest.cpp b/opt-pilot/Tests/MPIHelperTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/ManagedIDsTest.cpp b/opt-pilot/Tests/ManagedIDsTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/Opal/FiPha3Opt1.data b/opt-pilot/Tests/Opal/FiPha3Opt1.data old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/Opal/FiPha3Opt1.tmpl b/opt-pilot/Tests/Opal/FiPha3Opt1.tmpl old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/Opal/fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat b/opt-pilot/Tests/Opal/fieldmaps/INSB_MSLAC_Bz_NOFRINGE_OPAL.dat old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/Opal/fieldmaps/NEW_SINGLE_SOL_NOFRINGE_OPAL.dat b/opt-pilot/Tests/Opal/fieldmaps/NEW_SINGLE_SOL_NOFRINGE_OPAL.dat old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/Opal/nsga2/nsga2_param.txt b/opt-pilot/Tests/Opal/nsga2/nsga2_param.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/OpalInputFileParserTest.cpp b/opt-pilot/Tests/OpalInputFileParserTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/PisaStandAlone/Problem.in b/opt-pilot/Tests/PisaStandAlone/Problem.in old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/PisaStandAlone/nsga2/nsga2_param.txt b/opt-pilot/Tests/PisaStandAlone/nsga2/nsga2_param.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/PopulationTest.cpp b/opt-pilot/Tests/PopulationTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/PythonExprTest.cpp b/opt-pilot/Tests/PythonExprTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/SDDSParserTest.cpp b/opt-pilot/Tests/SDDSParserTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/SumErrSqExpressionTest.cpp b/opt-pilot/Tests/SumErrSqExpressionTest.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/generatesim.cpp b/opt-pilot/Tests/generatesim.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/gentest.data b/opt-pilot/Tests/gentest.data old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/gentest.tmpl b/opt-pilot/Tests/gentest.tmpl old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/resources/fromfile_test.dat b/opt-pilot/Tests/resources/fromfile_test.dat old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/resources/fromfile_test2.dat b/opt-pilot/Tests/resources/fromfile_test2.dat old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/resources/measurement_test.dat b/opt-pilot/Tests/resources/measurement_test.dat old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/resources/test.in b/opt-pilot/Tests/resources/test.in old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/resources/test.py b/opt-pilot/Tests/resources/test.py old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/resources/test.stat b/opt-pilot/Tests/resources/test.stat old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/runsim.cpp b/opt-pilot/Tests/runsim.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Tests/schedsim.cpp b/opt-pilot/Tests/schedsim.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/AsyncSendBuffers.h b/opt-pilot/Util/AsyncSendBuffers.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/CMakeLists.txt b/opt-pilot/Util/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/CmdArguments.cpp b/opt-pilot/Util/CmdArguments.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/CmdArguments.h b/opt-pilot/Util/CmdArguments.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/CommentAnnotatedInputFileParser.cpp b/opt-pilot/Util/CommentAnnotatedInputFileParser.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/CommentAnnotatedInputFileParser.h b/opt-pilot/Util/CommentAnnotatedInputFileParser.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/HashNameGenerator.h b/opt-pilot/Util/HashNameGenerator.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/InputFileParser.h b/opt-pilot/Util/InputFileParser.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/MPIHelper.cpp b/opt-pilot/Util/MPIHelper.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/MPIHelper.h b/opt-pilot/Util/MPIHelper.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/ManagedIDs.h b/opt-pilot/Util/ManagedIDs.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/OpalInputFileParser.h b/opt-pilot/Util/OpalInputFileParser.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/OptPilotException.h b/opt-pilot/Util/OptPilotException.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/PeakReader.cpp b/opt-pilot/Util/PeakReader.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/PeakReader.h b/opt-pilot/Util/PeakReader.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/PlainInputFileParser.h b/opt-pilot/Util/PlainInputFileParser.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/ProbeReader.cpp b/opt-pilot/Util/ProbeReader.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/ProbeReader.h b/opt-pilot/Util/ProbeReader.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser.cpp b/opt-pilot/Util/SDDSParser.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser.h b/opt-pilot/Util/SDDSParser.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/SDDSParserException.h b/opt-pilot/Util/SDDSParser/SDDSParserException.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/array.cpp b/opt-pilot/Util/SDDSParser/array.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/array.hpp b/opt-pilot/Util/SDDSParser/array.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/array_def.hpp b/opt-pilot/Util/SDDSParser/array_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/associate.cpp b/opt-pilot/Util/SDDSParser/associate.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/associate.hpp b/opt-pilot/Util/SDDSParser/associate.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/associate_def.hpp b/opt-pilot/Util/SDDSParser/associate_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/ast.cpp b/opt-pilot/Util/SDDSParser/ast.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/ast.hpp b/opt-pilot/Util/SDDSParser/ast.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/ast_def.hpp b/opt-pilot/Util/SDDSParser/ast_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/column.cpp b/opt-pilot/Util/SDDSParser/column.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/column.hpp b/opt-pilot/Util/SDDSParser/column.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/column_def.hpp b/opt-pilot/Util/SDDSParser/column_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/data.cpp b/opt-pilot/Util/SDDSParser/data.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/data.hpp b/opt-pilot/Util/SDDSParser/data.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/data_def.hpp b/opt-pilot/Util/SDDSParser/data_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/description.cpp b/opt-pilot/Util/SDDSParser/description.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/description.hpp b/opt-pilot/Util/SDDSParser/description.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/description_def.hpp b/opt-pilot/Util/SDDSParser/description_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/error_handler.hpp b/opt-pilot/Util/SDDSParser/error_handler.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/file.cpp b/opt-pilot/Util/SDDSParser/file.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/file.hpp b/opt-pilot/Util/SDDSParser/file.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/file_def.hpp b/opt-pilot/Util/SDDSParser/file_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/include.cpp b/opt-pilot/Util/SDDSParser/include.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/include.hpp b/opt-pilot/Util/SDDSParser/include.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/include_def.hpp b/opt-pilot/Util/SDDSParser/include_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/parameter.cpp b/opt-pilot/Util/SDDSParser/parameter.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/parameter.hpp b/opt-pilot/Util/SDDSParser/parameter.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/parameter_def.hpp b/opt-pilot/Util/SDDSParser/parameter_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/skipper.hpp b/opt-pilot/Util/SDDSParser/skipper.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/version.cpp b/opt-pilot/Util/SDDSParser/version.cpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/version.hpp b/opt-pilot/Util/SDDSParser/version.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSParser/version_def.hpp b/opt-pilot/Util/SDDSParser/version_def.hpp old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/SDDSReader.h b/opt-pilot/Util/SDDSReader.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Statistics.h b/opt-pilot/Util/Statistics.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Trace/CoutSink.h b/opt-pilot/Util/Trace/CoutSink.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Trace/FileSink.h b/opt-pilot/Util/Trace/FileSink.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Trace/MyPid.h b/opt-pilot/Util/Trace/MyPid.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Trace/Timestamp.h b/opt-pilot/Util/Trace/Timestamp.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Trace/Trace.h b/opt-pilot/Util/Trace/Trace.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Trace/TraceComponent.h b/opt-pilot/Util/Trace/TraceComponent.h old mode 100755 new mode 100644 diff --git a/opt-pilot/Util/Types.h b/opt-pilot/Util/Types.h old mode 100755 new mode 100644 diff --git a/opt-pilot/config.h.in b/opt-pilot/config.h.in old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/CMakeLists.txt b/opt-pilot/extlib/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/PISA_cfg b/opt-pilot/extlib/nsga2/PISA_cfg old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/nsga2.c b/opt-pilot/extlib/nsga2/nsga2.c old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/nsga2.h b/opt-pilot/extlib/nsga2/nsga2.h old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/nsga2_documentation.txt b/opt-pilot/extlib/nsga2/nsga2_documentation.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/nsga2_functions.c b/opt-pilot/extlib/nsga2/nsga2_functions.c old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/nsga2_io.c b/opt-pilot/extlib/nsga2/nsga2_io.c old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/nsga2/nsga2_param.txt b/opt-pilot/extlib/nsga2/nsga2_param.txt old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT b/opt-pilot/extlib/wfgHypervolume/CHANGELOG.TXT old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/wfgHypervolume/LICENSE b/opt-pilot/extlib/wfgHypervolume/LICENSE old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/wfgHypervolume/README.TXT b/opt-pilot/extlib/wfgHypervolume/README.TXT old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/wfgHypervolume/avl.h b/opt-pilot/extlib/wfgHypervolume/avl.h old mode 100755 new mode 100644 diff --git a/opt-pilot/extlib/wfgHypervolume/wfg.h b/opt-pilot/extlib/wfgHypervolume/wfg.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Action.cpp b/src/AbstractObjects/Action.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Action.h b/src/AbstractObjects/Action.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Attribute.cpp b/src/AbstractObjects/Attribute.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Attribute.h b/src/AbstractObjects/Attribute.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/AttributeBase.cpp b/src/AbstractObjects/AttributeBase.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/AttributeBase.h b/src/AbstractObjects/AttributeBase.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/AttributeHandler.cpp b/src/AbstractObjects/AttributeHandler.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/AttributeHandler.h b/src/AbstractObjects/AttributeHandler.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/BeamSequence.cpp b/src/AbstractObjects/BeamSequence.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/BeamSequence.h b/src/AbstractObjects/BeamSequence.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/CMakeLists.txt b/src/AbstractObjects/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Definition.cpp b/src/AbstractObjects/Definition.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Definition.h b/src/AbstractObjects/Definition.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Directory.cpp b/src/AbstractObjects/Directory.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Directory.h b/src/AbstractObjects/Directory.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Editor.cpp b/src/AbstractObjects/Editor.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Editor.h b/src/AbstractObjects/Editor.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Element.cpp b/src/AbstractObjects/Element.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Element.h b/src/AbstractObjects/Element.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Expressions.h b/src/AbstractObjects/Expressions.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Invalidator.cpp b/src/AbstractObjects/Invalidator.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Invalidator.h b/src/AbstractObjects/Invalidator.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Object.cpp b/src/AbstractObjects/Object.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Object.h b/src/AbstractObjects/Object.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/ObjectFunction.cpp b/src/AbstractObjects/ObjectFunction.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/ObjectFunction.h b/src/AbstractObjects/ObjectFunction.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/OpalData.cpp b/src/AbstractObjects/OpalData.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/OpalData.h b/src/AbstractObjects/OpalData.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/PlaceRep.cpp b/src/AbstractObjects/PlaceRep.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/PlaceRep.h b/src/AbstractObjects/PlaceRep.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/RangeRep.cpp b/src/AbstractObjects/RangeRep.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/RangeRep.h b/src/AbstractObjects/RangeRep.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Table.cpp b/src/AbstractObjects/Table.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/Table.h b/src/AbstractObjects/Table.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/TableRowRep.cpp b/src/AbstractObjects/TableRowRep.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/TableRowRep.h b/src/AbstractObjects/TableRowRep.h old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/ValueDefinition.cpp b/src/AbstractObjects/ValueDefinition.cpp old mode 100755 new mode 100644 diff --git a/src/AbstractObjects/ValueDefinition.h b/src/AbstractObjects/ValueDefinition.h old mode 100755 new mode 100644 diff --git a/src/Algebra/CMakeLists.txt b/src/Algebra/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Algebra/QRSolver.cpp b/src/Algebra/QRSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Algebra/QRSolver.h b/src/Algebra/QRSolver.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/AutophaseTracker.cpp b/src/Algorithms/AutophaseTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/AutophaseTracker.h b/src/Algorithms/AutophaseTracker.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/BeamBeam3D.cpp b/src/Algorithms/BeamBeam3D.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/BeamBeam3D.h b/src/Algorithms/BeamBeam3D.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/CMakeLists.txt b/src/Algorithms/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Algorithms/CavityAutophaser.cpp b/src/Algorithms/CavityAutophaser.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/CavityAutophaser.h b/src/Algorithms/CavityAutophaser.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/Ctunes.h b/src/Algorithms/Ctunes.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/Ctunes.hpp b/src/Algorithms/Ctunes.hpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/IndexMap.cpp b/src/Algorithms/IndexMap.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/IndexMap.h b/src/Algorithms/IndexMap.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/LieMapper.cpp b/src/Algorithms/LieMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/LieMapper.h b/src/Algorithms/LieMapper.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/MPSplitIntegrator.cpp b/src/Algorithms/MPSplitIntegrator.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/MPSplitIntegrator.h b/src/Algorithms/MPSplitIntegrator.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/NilTracker.cpp b/src/Algorithms/NilTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/NilTracker.h b/src/Algorithms/NilTracker.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/OrbitThreader.cpp b/src/Algorithms/OrbitThreader.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/OrbitThreader.h b/src/Algorithms/OrbitThreader.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/ParallelCyclotronTracker.cpp b/src/Algorithms/ParallelCyclotronTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/ParallelCyclotronTracker.h b/src/Algorithms/ParallelCyclotronTracker.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/ParallelSliceTracker.cpp b/src/Algorithms/ParallelSliceTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/ParallelSliceTracker.h b/src/Algorithms/ParallelSliceTracker.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/ParallelTTracker.cpp b/src/Algorithms/ParallelTTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/ParallelTTracker.h b/src/Algorithms/ParallelTTracker.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/StatisticalErrors.cpp b/src/Algorithms/StatisticalErrors.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/StatisticalErrors.h b/src/Algorithms/StatisticalErrors.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/StatisticalErrorsUtilities.cpp b/src/Algorithms/StatisticalErrorsUtilities.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/StatisticalErrorsUtilities.h b/src/Algorithms/StatisticalErrorsUtilities.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/ThickMapper.cpp b/src/Algorithms/ThickMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/ThickMapper.h b/src/Algorithms/ThickMapper.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/ThickTracker.cpp b/src/Algorithms/ThickTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/ThickTracker.h b/src/Algorithms/ThickTracker.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/TransportMapper.cpp b/src/Algorithms/TransportMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/TransportMapper.h b/src/Algorithms/TransportMapper.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/BetError.cpp b/src/Algorithms/bet/BetError.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/BetError.h b/src/Algorithms/bet/BetError.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/EnvelopeBunch.cpp b/src/Algorithms/bet/EnvelopeBunch.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/EnvelopeBunch.h b/src/Algorithms/bet/EnvelopeBunch.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/EnvelopeSlice.cpp b/src/Algorithms/bet/EnvelopeSlice.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/EnvelopeSlice.h b/src/Algorithms/bet/EnvelopeSlice.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/error.cpp b/src/Algorithms/bet/error.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/error.h b/src/Algorithms/bet/error.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/functions.cpp b/src/Algorithms/bet/math/functions.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/functions.h b/src/Algorithms/bet/math/functions.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/integrate.cpp b/src/Algorithms/bet/math/integrate.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/integrate.h b/src/Algorithms/bet/math/integrate.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/interpol.cpp b/src/Algorithms/bet/math/interpol.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/interpol.h b/src/Algorithms/bet/math/interpol.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/linfit.cpp b/src/Algorithms/bet/math/linfit.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/linfit.h b/src/Algorithms/bet/math/linfit.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/rk.cpp b/src/Algorithms/bet/math/rk.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/rk.h b/src/Algorithms/bet/math/rk.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/root.cpp b/src/Algorithms/bet/math/root.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/root.h b/src/Algorithms/bet/math/root.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/savgol.cpp b/src/Algorithms/bet/math/savgol.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/savgol.h b/src/Algorithms/bet/math/savgol.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/sort.cpp b/src/Algorithms/bet/math/sort.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/sort.h b/src/Algorithms/bet/math/sort.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/svdfit.cpp b/src/Algorithms/bet/math/svdfit.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/math/svdfit.h b/src/Algorithms/bet/math/svdfit.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/profile.cpp b/src/Algorithms/bet/profile.cpp old mode 100755 new mode 100644 diff --git a/src/Algorithms/bet/profile.h b/src/Algorithms/bet/profile.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/lomb.h b/src/Algorithms/lomb.h old mode 100755 new mode 100644 diff --git a/src/Algorithms/lomb.hpp b/src/Algorithms/lomb.hpp old mode 100755 new mode 100644 diff --git a/src/Amr/AbstractAmrWriter.h b/src/Amr/AbstractAmrWriter.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrBoxLib.cpp b/src/Amr/AmrBoxLib.cpp old mode 100755 new mode 100644 diff --git a/src/Amr/AmrBoxLib.h b/src/Amr/AmrBoxLib.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrBoxLib_F.h b/src/Amr/AmrBoxLib_F.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrDefs.h b/src/Amr/AmrDefs.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrObject.cpp b/src/Amr/AmrObject.cpp old mode 100755 new mode 100644 diff --git a/src/Amr/AmrObject.h b/src/Amr/AmrObject.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrPythonWriter.cpp b/src/Amr/AmrPythonWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Amr/AmrPythonWriter.h b/src/Amr/AmrPythonWriter.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrSliceWriter.cpp b/src/Amr/AmrSliceWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Amr/AmrSliceWriter.h b/src/Amr/AmrSliceWriter.h old mode 100755 new mode 100644 diff --git a/src/Amr/AmrYtWriter.cpp b/src/Amr/AmrYtWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Amr/AmrYtWriter.h b/src/Amr/AmrYtWriter.h old mode 100755 new mode 100644 diff --git a/src/Amr/BoxLibLayout.h b/src/Amr/BoxLibLayout.h old mode 100755 new mode 100644 diff --git a/src/Amr/BoxLibLayout.hpp b/src/Amr/BoxLibLayout.hpp old mode 100755 new mode 100644 diff --git a/src/Amr/BoxLibParticle.h b/src/Amr/BoxLibParticle.h old mode 100755 new mode 100644 diff --git a/src/Amr/BoxLibParticle.hpp b/src/Amr/BoxLibParticle.hpp old mode 100755 new mode 100644 diff --git a/src/Amr/CMakeLists.txt b/src/Amr/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Amr/Tagging_nd.f90 b/src/Amr/Tagging_nd.f90 old mode 100755 new mode 100644 diff --git a/src/Aperture/Aperture.cpp b/src/Aperture/Aperture.cpp old mode 100755 new mode 100644 diff --git a/src/Aperture/Aperture.h b/src/Aperture/Aperture.h old mode 100755 new mode 100644 diff --git a/src/Aperture/CMakeLists.txt b/src/Aperture/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Aperture/Split.cpp b/src/Aperture/Split.cpp old mode 100755 new mode 100644 diff --git a/src/Aperture/Split.h b/src/Aperture/Split.h old mode 100755 new mode 100644 diff --git a/src/Attributes/Attributes.cpp b/src/Attributes/Attributes.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/Attributes.h b/src/Attributes/Attributes.h old mode 100755 new mode 100644 diff --git a/src/Attributes/Bool.cpp b/src/Attributes/Bool.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/Bool.h b/src/Attributes/Bool.h old mode 100755 new mode 100644 diff --git a/src/Attributes/BoolArray.cpp b/src/Attributes/BoolArray.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/BoolArray.h b/src/Attributes/BoolArray.h old mode 100755 new mode 100644 diff --git a/src/Attributes/CMakeLists.txt b/src/Attributes/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Attributes/Place.cpp b/src/Attributes/Place.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/Place.h b/src/Attributes/Place.h old mode 100755 new mode 100644 diff --git a/src/Attributes/Range.cpp b/src/Attributes/Range.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/Range.h b/src/Attributes/Range.h old mode 100755 new mode 100644 diff --git a/src/Attributes/Real.cpp b/src/Attributes/Real.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/Real.h b/src/Attributes/Real.h old mode 100755 new mode 100644 diff --git a/src/Attributes/RealArray.cpp b/src/Attributes/RealArray.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/RealArray.h b/src/Attributes/RealArray.h old mode 100755 new mode 100644 diff --git a/src/Attributes/Reference.cpp b/src/Attributes/Reference.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/Reference.h b/src/Attributes/Reference.h old mode 100755 new mode 100644 diff --git a/src/Attributes/StringArray.cpp b/src/Attributes/StringArray.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/StringArray.h b/src/Attributes/StringArray.h old mode 100755 new mode 100644 diff --git a/src/Attributes/TableRow.cpp b/src/Attributes/TableRow.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/TableRow.h b/src/Attributes/TableRow.h old mode 100755 new mode 100644 diff --git a/src/Attributes/TokenList.cpp b/src/Attributes/TokenList.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/TokenList.h b/src/Attributes/TokenList.h old mode 100755 new mode 100644 diff --git a/src/Attributes/TokenListArray.cpp b/src/Attributes/TokenListArray.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/TokenListArray.h b/src/Attributes/TokenListArray.h old mode 100755 new mode 100644 diff --git a/src/Attributes/opalstr.cpp b/src/Attributes/opalstr.cpp old mode 100755 new mode 100644 diff --git a/src/Attributes/opalstr.h b/src/Attributes/opalstr.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/CMakeLists.txt b/src/BasicActions/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/BasicActions/Call.cpp b/src/BasicActions/Call.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Call.h b/src/BasicActions/Call.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Dump.cpp b/src/BasicActions/Dump.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Dump.h b/src/BasicActions/Dump.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/DumpEMFields.cpp b/src/BasicActions/DumpEMFields.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/DumpEMFields.h b/src/BasicActions/DumpEMFields.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/DumpFields.cpp b/src/BasicActions/DumpFields.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/DumpFields.h b/src/BasicActions/DumpFields.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Echo.cpp b/src/BasicActions/Echo.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Echo.h b/src/BasicActions/Echo.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Help.cpp b/src/BasicActions/Help.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Help.h b/src/BasicActions/Help.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Option.cpp b/src/BasicActions/Option.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Option.h b/src/BasicActions/Option.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/PSystem.cpp b/src/BasicActions/PSystem.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/PSystem.h b/src/BasicActions/PSystem.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Quit.cpp b/src/BasicActions/Quit.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Quit.h b/src/BasicActions/Quit.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Save.cpp b/src/BasicActions/Save.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Save.h b/src/BasicActions/Save.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Select.cpp b/src/BasicActions/Select.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Select.h b/src/BasicActions/Select.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Show.cpp b/src/BasicActions/Show.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Show.h b/src/BasicActions/Show.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Stop.cpp b/src/BasicActions/Stop.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Stop.h b/src/BasicActions/Stop.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/System.cpp b/src/BasicActions/System.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/System.h b/src/BasicActions/System.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Title.cpp b/src/BasicActions/Title.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Title.h b/src/BasicActions/Title.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/Value.cpp b/src/BasicActions/Value.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/Value.h b/src/BasicActions/Value.h old mode 100755 new mode 100644 diff --git a/src/BasicActions/What.cpp b/src/BasicActions/What.cpp old mode 100755 new mode 100644 diff --git a/src/BasicActions/What.h b/src/BasicActions/What.h old mode 100755 new mode 100644 diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/AlignWrapper.cpp b/src/Classic/AbsBeamline/AlignWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/AlignWrapper.h b/src/Classic/AbsBeamline/AlignWrapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/AttributeSet.cpp b/src/Classic/AbsBeamline/AttributeSet.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/AttributeSet.h b/src/Classic/AbsBeamline/AttributeSet.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/BeamBeam.cpp b/src/Classic/AbsBeamline/BeamBeam.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/BeamBeam.h b/src/Classic/AbsBeamline/BeamBeam.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/BeamlineVisitor.cpp b/src/Classic/AbsBeamline/BeamlineVisitor.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/BeamlineVisitor.h b/src/Classic/AbsBeamline/BeamlineVisitor.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Bend.cpp b/src/Classic/AbsBeamline/Bend.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Bend.h b/src/Classic/AbsBeamline/Bend.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/BendBase.cpp b/src/Classic/AbsBeamline/BendBase.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/BendBase.h b/src/Classic/AbsBeamline/BendBase.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/CMakeLists.txt b/src/Classic/AbsBeamline/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Collimator.cpp b/src/Classic/AbsBeamline/Collimator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Collimator.h b/src/Classic/AbsBeamline/Collimator.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Component.cpp b/src/Classic/AbsBeamline/Component.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Component.h b/src/Classic/AbsBeamline/Component.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Corrector.cpp b/src/Classic/AbsBeamline/Corrector.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Corrector.h b/src/Classic/AbsBeamline/Corrector.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Cyclotron.cpp b/src/Classic/AbsBeamline/Cyclotron.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Cyclotron.h b/src/Classic/AbsBeamline/Cyclotron.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/CyclotronValley.cpp b/src/Classic/AbsBeamline/CyclotronValley.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/CyclotronValley.h b/src/Classic/AbsBeamline/CyclotronValley.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Degrader.cpp b/src/Classic/AbsBeamline/Degrader.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Degrader.h b/src/Classic/AbsBeamline/Degrader.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Diagnostic.cpp b/src/Classic/AbsBeamline/Diagnostic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Diagnostic.h b/src/Classic/AbsBeamline/Diagnostic.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Drift.cpp b/src/Classic/AbsBeamline/Drift.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Drift.h b/src/Classic/AbsBeamline/Drift.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ElementBase.cpp b/src/Classic/AbsBeamline/ElementBase.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ElementBase.h b/src/Classic/AbsBeamline/ElementBase.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ElementImage.cpp b/src/Classic/AbsBeamline/ElementImage.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ElementImage.h b/src/Classic/AbsBeamline/ElementImage.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/CMakeLists.txt b/src/Classic/AbsBeamline/EndFieldModel/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.cpp b/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.h b/src/Classic/AbsBeamline/EndFieldModel/EndFieldModel.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/Enge.cpp b/src/Classic/AbsBeamline/EndFieldModel/Enge.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/Enge.h b/src/Classic/AbsBeamline/EndFieldModel/Enge.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/Tanh.cpp b/src/Classic/AbsBeamline/EndFieldModel/Tanh.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/EndFieldModel/Tanh.h b/src/Classic/AbsBeamline/EndFieldModel/Tanh.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Integrator.cpp b/src/Classic/AbsBeamline/Integrator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Integrator.h b/src/Classic/AbsBeamline/Integrator.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Lambertson.cpp b/src/Classic/AbsBeamline/Lambertson.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Lambertson.h b/src/Classic/AbsBeamline/Lambertson.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Marker.cpp b/src/Classic/AbsBeamline/Marker.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Marker.h b/src/Classic/AbsBeamline/Marker.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Monitor.cpp b/src/Classic/AbsBeamline/Monitor.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Monitor.h b/src/Classic/AbsBeamline/Monitor.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Multipole.cpp b/src/Classic/AbsBeamline/Multipole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Multipole.h b/src/Classic/AbsBeamline/Multipole.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/MultipoleT.cpp b/src/Classic/AbsBeamline/MultipoleT.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/MultipoleT.h b/src/Classic/AbsBeamline/MultipoleT.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/MultipoleT.png b/src/Classic/AbsBeamline/MultipoleT.png old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Offset.cpp b/src/Classic/AbsBeamline/Offset.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Offset.h b/src/Classic/AbsBeamline/Offset.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ParallelPlate.cpp b/src/Classic/AbsBeamline/ParallelPlate.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ParallelPlate.h b/src/Classic/AbsBeamline/ParallelPlate.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Patch.cpp b/src/Classic/AbsBeamline/Patch.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Patch.h b/src/Classic/AbsBeamline/Patch.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Probe.cpp b/src/Classic/AbsBeamline/Probe.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Probe.h b/src/Classic/AbsBeamline/Probe.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RBend.cpp b/src/Classic/AbsBeamline/RBend.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RBend.h b/src/Classic/AbsBeamline/RBend.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RBend3D.cpp b/src/Classic/AbsBeamline/RBend3D.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RBend3D.h b/src/Classic/AbsBeamline/RBend3D.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RFCavity.cpp b/src/Classic/AbsBeamline/RFCavity.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RFCavity.h b/src/Classic/AbsBeamline/RFCavity.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RFQuadrupole.cpp b/src/Classic/AbsBeamline/RFQuadrupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/RFQuadrupole.h b/src/Classic/AbsBeamline/RFQuadrupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Ring.cpp b/src/Classic/AbsBeamline/Ring.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Ring.h b/src/Classic/AbsBeamline/Ring.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/SBend.cpp b/src/Classic/AbsBeamline/SBend.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/SBend.h b/src/Classic/AbsBeamline/SBend.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/SBend3D.cpp b/src/Classic/AbsBeamline/SBend3D.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/SBend3D.h b/src/Classic/AbsBeamline/SBend3D.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp b/src/Classic/AbsBeamline/ScalingFFAGMagnet.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/ScalingFFAGMagnet.h b/src/Classic/AbsBeamline/ScalingFFAGMagnet.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/SectorFieldMapComponent.h b/src/Classic/AbsBeamline/SectorFieldMapComponent.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Separator.cpp b/src/Classic/AbsBeamline/Separator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Separator.h b/src/Classic/AbsBeamline/Separator.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Septum.cpp b/src/Classic/AbsBeamline/Septum.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Septum.h b/src/Classic/AbsBeamline/Septum.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Solenoid.cpp b/src/Classic/AbsBeamline/Solenoid.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Solenoid.h b/src/Classic/AbsBeamline/Solenoid.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Source.cpp b/src/Classic/AbsBeamline/Source.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Source.h b/src/Classic/AbsBeamline/Source.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/SpecificElementVisitor.h b/src/Classic/AbsBeamline/SpecificElementVisitor.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Stripper.cpp b/src/Classic/AbsBeamline/Stripper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/Stripper.h b/src/Classic/AbsBeamline/Stripper.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/TravelingWave.cpp b/src/Classic/AbsBeamline/TravelingWave.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/TravelingWave.h b/src/Classic/AbsBeamline/TravelingWave.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/VariableRFCavity.cpp b/src/Classic/AbsBeamline/VariableRFCavity.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/VariableRFCavity.h b/src/Classic/AbsBeamline/VariableRFCavity.h old mode 100755 new mode 100644 diff --git a/src/Classic/AbsBeamline/multipole_t.tex b/src/Classic/AbsBeamline/multipole_t.tex old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Array1D.h b/src/Classic/Algebra/Array1D.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Array2D.h b/src/Classic/Algebra/Array2D.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/CMakeLists.txt b/src/Classic/Algebra/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/ComplexEigen.cpp b/src/Classic/Algebra/ComplexEigen.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/ComplexEigen.h b/src/Classic/Algebra/ComplexEigen.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/DoubleEigen.cpp b/src/Classic/Algebra/DoubleEigen.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/DoubleEigen.h b/src/Classic/Algebra/DoubleEigen.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/DynamicFixedPoint.cpp b/src/Classic/Algebra/DynamicFixedPoint.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/DynamicFixedPoint.h b/src/Classic/Algebra/DynamicFixedPoint.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/LUMatrix.h b/src/Classic/Algebra/LUMatrix.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/LieMap.h b/src/Classic/Algebra/LieMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Matrix.h b/src/Classic/Algebra/Matrix.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/NormalForm.cpp b/src/Classic/Algebra/NormalForm.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/NormalForm.h b/src/Classic/Algebra/NormalForm.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/SliceIterator.h b/src/Classic/Algebra/SliceIterator.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/StaticFixedPoint.cpp b/src/Classic/Algebra/StaticFixedPoint.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/StaticFixedPoint.h b/src/Classic/Algebra/StaticFixedPoint.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Tps.cpp b/src/Classic/Algebra/Tps.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Tps.h b/src/Classic/Algebra/Tps.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsComplex.cpp b/src/Classic/Algebra/TpsComplex.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsData.cpp b/src/Classic/Algebra/TpsData.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsData.h b/src/Classic/Algebra/TpsData.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsDouble.cpp b/src/Classic/Algebra/TpsDouble.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsMath.h b/src/Classic/Algebra/TpsMath.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsMonomial.cpp b/src/Classic/Algebra/TpsMonomial.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsMonomial.h b/src/Classic/Algebra/TpsMonomial.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsSubstitution.h b/src/Classic/Algebra/TpsSubstitution.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/TpsTps.cpp b/src/Classic/Algebra/TpsTps.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Vector.h b/src/Classic/Algebra/Vector.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Vps.cpp b/src/Classic/Algebra/Vps.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/Vps.h b/src/Classic/Algebra/Vps.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/VpsInvMap.h b/src/Classic/Algebra/VpsInvMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algebra/VpsMap.h b/src/Classic/Algebra/VpsMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AbstractMapper.cpp b/src/Classic/Algorithms/AbstractMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AbstractMapper.h b/src/Classic/Algorithms/AbstractMapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AbstractTimeDependence.cpp b/src/Classic/Algorithms/AbstractTimeDependence.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AbstractTimeDependence.h b/src/Classic/Algorithms/AbstractTimeDependence.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AbstractTracker.cpp b/src/Classic/Algorithms/AbstractTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AbstractTracker.h b/src/Classic/Algorithms/AbstractTracker.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AmrPartBunch.cpp b/src/Classic/Algorithms/AmrPartBunch.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/AmrPartBunch.h b/src/Classic/Algorithms/AmrPartBunch.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/CMakeLists.txt b/src/Classic/Algorithms/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/CoordinateSystemTrafo.cpp b/src/Classic/Algorithms/CoordinateSystemTrafo.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/CoordinateSystemTrafo.h b/src/Classic/Algorithms/CoordinateSystemTrafo.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/DefaultVisitor.cpp b/src/Classic/Algorithms/DefaultVisitor.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/DefaultVisitor.h b/src/Classic/Algorithms/DefaultVisitor.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Flagger.cpp b/src/Classic/Algorithms/Flagger.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Flagger.h b/src/Classic/Algorithms/Flagger.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/IdealMapper.cpp b/src/Classic/Algorithms/IdealMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/IdealMapper.h b/src/Classic/Algorithms/IdealMapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/LinearMapper.cpp b/src/Classic/Algorithms/LinearMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/LinearMapper.h b/src/Classic/Algorithms/LinearMapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/ListElem.h b/src/Classic/Algorithms/ListElem.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/MapIntegrator.cpp b/src/Classic/Algorithms/MapIntegrator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/MapIntegrator.h b/src/Classic/Algorithms/MapIntegrator.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Mapper.cpp b/src/Classic/Algorithms/Mapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Mapper.h b/src/Classic/Algorithms/Mapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/OpalParticle.cpp b/src/Classic/Algorithms/OpalParticle.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/OpalParticle.h b/src/Classic/Algorithms/OpalParticle.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/OrbitTracker.cpp b/src/Classic/Algorithms/OrbitTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/OrbitTracker.h b/src/Classic/Algorithms/OrbitTracker.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PBunchDefs.h b/src/Classic/Algorithms/PBunchDefs.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBins.cpp b/src/Classic/Algorithms/PartBins.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBins.h b/src/Classic/Algorithms/PartBins.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBinsCyc.cpp b/src/Classic/Algorithms/PartBinsCyc.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBinsCyc.h b/src/Classic/Algorithms/PartBinsCyc.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBunch.cpp b/src/Classic/Algorithms/PartBunch.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBunch.h b/src/Classic/Algorithms/PartBunch.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBunchBase.h b/src/Classic/Algorithms/PartBunchBase.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartBunchBase.hpp b/src/Classic/Algorithms/PartBunchBase.hpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartData.cpp b/src/Classic/Algorithms/PartData.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PartData.h b/src/Classic/Algorithms/PartData.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PolynomialTimeDependence.cpp b/src/Classic/Algorithms/PolynomialTimeDependence.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/PolynomialTimeDependence.h b/src/Classic/Algorithms/PolynomialTimeDependence.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Quaternion.cpp b/src/Classic/Algorithms/Quaternion.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Quaternion.h b/src/Classic/Algorithms/Quaternion.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Surveyor.cpp b/src/Classic/Algorithms/Surveyor.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Surveyor.h b/src/Classic/Algorithms/Surveyor.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/ThinMapper.cpp b/src/Classic/Algorithms/ThinMapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/ThinMapper.h b/src/Classic/Algorithms/ThinMapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/ThinTracker.cpp b/src/Classic/Algorithms/ThinTracker.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/ThinTracker.h b/src/Classic/Algorithms/ThinTracker.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/TrackIntegrator.cpp b/src/Classic/Algorithms/TrackIntegrator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/TrackIntegrator.h b/src/Classic/Algorithms/TrackIntegrator.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Tracker.cpp b/src/Classic/Algorithms/Tracker.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Tracker.h b/src/Classic/Algorithms/Tracker.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/Vektor.h b/src/Classic/Algorithms/Vektor.h old mode 100755 new mode 100644 diff --git a/src/Classic/Algorithms/rbendmap.h b/src/Classic/Algorithms/rbendmap.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/BeamBeamRep.cpp b/src/Classic/BeamlineCore/BeamBeamRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/BeamBeamRep.h b/src/Classic/BeamlineCore/BeamBeamRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CMakeLists.txt b/src/Classic/BeamlineCore/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CollimatorRep.cpp b/src/Classic/BeamlineCore/CollimatorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CollimatorRep.h b/src/Classic/BeamlineCore/CollimatorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CorrectorRep.cpp b/src/Classic/BeamlineCore/CorrectorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CorrectorRep.h b/src/Classic/BeamlineCore/CorrectorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CyclotronRep.cpp b/src/Classic/BeamlineCore/CyclotronRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CyclotronRep.h b/src/Classic/BeamlineCore/CyclotronRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CyclotronValleyRep.cpp b/src/Classic/BeamlineCore/CyclotronValleyRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/CyclotronValleyRep.h b/src/Classic/BeamlineCore/CyclotronValleyRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/DegraderRep.cpp b/src/Classic/BeamlineCore/DegraderRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/DegraderRep.h b/src/Classic/BeamlineCore/DegraderRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/DriftRep.cpp b/src/Classic/BeamlineCore/DriftRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/DriftRep.h b/src/Classic/BeamlineCore/DriftRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/MarkerRep.cpp b/src/Classic/BeamlineCore/MarkerRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/MarkerRep.h b/src/Classic/BeamlineCore/MarkerRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/MonitorRep.cpp b/src/Classic/BeamlineCore/MonitorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/MonitorRep.h b/src/Classic/BeamlineCore/MonitorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/MultipoleRep.cpp b/src/Classic/BeamlineCore/MultipoleRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/MultipoleRep.h b/src/Classic/BeamlineCore/MultipoleRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/Octupole.cpp b/src/Classic/BeamlineCore/Octupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/Octupole.h b/src/Classic/BeamlineCore/Octupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/ParallelPlateRep.cpp b/src/Classic/BeamlineCore/ParallelPlateRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/ParallelPlateRep.h b/src/Classic/BeamlineCore/ParallelPlateRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/PatchRep.cpp b/src/Classic/BeamlineCore/PatchRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/PatchRep.h b/src/Classic/BeamlineCore/PatchRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/ProbeRep.cpp b/src/Classic/BeamlineCore/ProbeRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/ProbeRep.h b/src/Classic/BeamlineCore/ProbeRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/Quadrupole.cpp b/src/Classic/BeamlineCore/Quadrupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/Quadrupole.h b/src/Classic/BeamlineCore/Quadrupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/RBendRep.cpp b/src/Classic/BeamlineCore/RBendRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/RBendRep.h b/src/Classic/BeamlineCore/RBendRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/RFCavityRep.cpp b/src/Classic/BeamlineCore/RFCavityRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/RFCavityRep.h b/src/Classic/BeamlineCore/RFCavityRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SBendRep.cpp b/src/Classic/BeamlineCore/SBendRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SBendRep.h b/src/Classic/BeamlineCore/SBendRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SeparatorRep.cpp b/src/Classic/BeamlineCore/SeparatorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SeparatorRep.h b/src/Classic/BeamlineCore/SeparatorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SeptumRep.cpp b/src/Classic/BeamlineCore/SeptumRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SeptumRep.h b/src/Classic/BeamlineCore/SeptumRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/Sextupole.cpp b/src/Classic/BeamlineCore/Sextupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/Sextupole.h b/src/Classic/BeamlineCore/Sextupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SingleMultipole.h b/src/Classic/BeamlineCore/SingleMultipole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SkewOctupole.cpp b/src/Classic/BeamlineCore/SkewOctupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SkewOctupole.h b/src/Classic/BeamlineCore/SkewOctupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SkewQuadrupole.cpp b/src/Classic/BeamlineCore/SkewQuadrupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SkewQuadrupole.h b/src/Classic/BeamlineCore/SkewQuadrupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SkewSextupole.cpp b/src/Classic/BeamlineCore/SkewSextupole.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SkewSextupole.h b/src/Classic/BeamlineCore/SkewSextupole.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SolenoidRep.cpp b/src/Classic/BeamlineCore/SolenoidRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SolenoidRep.h b/src/Classic/BeamlineCore/SolenoidRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SourceRep.cpp b/src/Classic/BeamlineCore/SourceRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/SourceRep.h b/src/Classic/BeamlineCore/SourceRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/StripperRep.cpp b/src/Classic/BeamlineCore/StripperRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/StripperRep.h b/src/Classic/BeamlineCore/StripperRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/TravelingWaveRep.cpp b/src/Classic/BeamlineCore/TravelingWaveRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/TravelingWaveRep.h b/src/Classic/BeamlineCore/TravelingWaveRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/XCorrectorRep.cpp b/src/Classic/BeamlineCore/XCorrectorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/XCorrectorRep.h b/src/Classic/BeamlineCore/XCorrectorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/XMonitorRep.cpp b/src/Classic/BeamlineCore/XMonitorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/XMonitorRep.h b/src/Classic/BeamlineCore/XMonitorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/YCorrectorRep.cpp b/src/Classic/BeamlineCore/YCorrectorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/YCorrectorRep.h b/src/Classic/BeamlineCore/YCorrectorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/YMonitorRep.cpp b/src/Classic/BeamlineCore/YMonitorRep.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineCore/YMonitorRep.h b/src/Classic/BeamlineCore/YMonitorRep.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/CMakeLists.txt b/src/Classic/BeamlineGeometry/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Euclid3D.cpp b/src/Classic/BeamlineGeometry/Euclid3D.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Euclid3D.h b/src/Classic/BeamlineGeometry/Euclid3D.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Euclid3DGeometry.cpp b/src/Classic/BeamlineGeometry/Euclid3DGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Euclid3DGeometry.h b/src/Classic/BeamlineGeometry/Euclid3DGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Geometry.cpp b/src/Classic/BeamlineGeometry/Geometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Geometry.h b/src/Classic/BeamlineGeometry/Geometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Matrix3D.cpp b/src/Classic/BeamlineGeometry/Matrix3D.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Matrix3D.h b/src/Classic/BeamlineGeometry/Matrix3D.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/NullGeometry.cpp b/src/Classic/BeamlineGeometry/NullGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/NullGeometry.h b/src/Classic/BeamlineGeometry/NullGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/OffsetGeometry.cpp b/src/Classic/BeamlineGeometry/OffsetGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/OffsetGeometry.h b/src/Classic/BeamlineGeometry/OffsetGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/PlanarArcGeometry.cpp b/src/Classic/BeamlineGeometry/PlanarArcGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/PlanarArcGeometry.h b/src/Classic/BeamlineGeometry/PlanarArcGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/RBendGeometry.cpp b/src/Classic/BeamlineGeometry/RBendGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/RBendGeometry.h b/src/Classic/BeamlineGeometry/RBendGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Rotation3D.cpp b/src/Classic/BeamlineGeometry/Rotation3D.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Rotation3D.h b/src/Classic/BeamlineGeometry/Rotation3D.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/SRotatedGeometry.cpp b/src/Classic/BeamlineGeometry/SRotatedGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/SRotatedGeometry.h b/src/Classic/BeamlineGeometry/SRotatedGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/StraightGeometry.cpp b/src/Classic/BeamlineGeometry/StraightGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/StraightGeometry.h b/src/Classic/BeamlineGeometry/StraightGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Vector3D.cpp b/src/Classic/BeamlineGeometry/Vector3D.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/BeamlineGeometry/Vector3D.h b/src/Classic/BeamlineGeometry/Vector3D.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/Beamline.cpp b/src/Classic/Beamlines/Beamline.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/Beamline.h b/src/Classic/Beamlines/Beamline.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/BeamlineGeometry.cpp b/src/Classic/Beamlines/BeamlineGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/BeamlineGeometry.h b/src/Classic/Beamlines/BeamlineGeometry.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/CMakeLists.txt b/src/Classic/Beamlines/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/ElmPtr.cpp b/src/Classic/Beamlines/ElmPtr.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/ElmPtr.h b/src/Classic/Beamlines/ElmPtr.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/FlaggedBeamline.cpp b/src/Classic/Beamlines/FlaggedBeamline.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/FlaggedBeamline.h b/src/Classic/Beamlines/FlaggedBeamline.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/FlaggedElmPtr.cpp b/src/Classic/Beamlines/FlaggedElmPtr.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/FlaggedElmPtr.h b/src/Classic/Beamlines/FlaggedElmPtr.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/SimpleBeamline.cpp b/src/Classic/Beamlines/SimpleBeamline.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/SimpleBeamline.h b/src/Classic/Beamlines/SimpleBeamline.h old mode 100755 new mode 100644 diff --git a/src/Classic/Beamlines/TBeamline.h b/src/Classic/Beamlines/TBeamline.h old mode 100755 new mode 100644 diff --git a/src/Classic/CMakeLists.txt b/src/Classic/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/CMakeLists.txt b/src/Classic/Channels/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/Channel.cpp b/src/Classic/Channels/Channel.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/Channel.h b/src/Classic/Channels/Channel.h old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/ConstChannel.cpp b/src/Classic/Channels/ConstChannel.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/ConstChannel.h b/src/Classic/Channels/ConstChannel.h old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/DirectChannel.h b/src/Classic/Channels/DirectChannel.h old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/IndexedChannel.h b/src/Classic/Channels/IndexedChannel.h old mode 100755 new mode 100644 diff --git a/src/Classic/Channels/IndirectChannel.h b/src/Classic/Channels/IndirectChannel.h old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/CMakeLists.txt b/src/Classic/ComponentWrappers/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/CorrectorWrapper.cpp b/src/Classic/ComponentWrappers/CorrectorWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/CorrectorWrapper.h b/src/Classic/ComponentWrappers/CorrectorWrapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/CyclotronWrapper.cpp b/src/Classic/ComponentWrappers/CyclotronWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/CyclotronWrapper.h b/src/Classic/ComponentWrappers/CyclotronWrapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/MultipoleWrapper.cpp b/src/Classic/ComponentWrappers/MultipoleWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/MultipoleWrapper.h b/src/Classic/ComponentWrappers/MultipoleWrapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/RBendWrapper.cpp b/src/Classic/ComponentWrappers/RBendWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/RBendWrapper.h b/src/Classic/ComponentWrappers/RBendWrapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/SBendWrapper.cpp b/src/Classic/ComponentWrappers/SBendWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/ComponentWrappers/SBendWrapper.h b/src/Classic/ComponentWrappers/SBendWrapper.h old mode 100755 new mode 100644 diff --git a/src/Classic/Construction/CMakeLists.txt b/src/Classic/Construction/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Construction/ElementFactory.cpp b/src/Classic/Construction/ElementFactory.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Construction/ElementFactory.h b/src/Classic/Construction/ElementFactory.h old mode 100755 new mode 100644 diff --git a/src/Classic/Construction/Factory.cpp b/src/Classic/Construction/Factory.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Construction/Factory.h b/src/Classic/Construction/Factory.h old mode 100755 new mode 100644 diff --git a/src/Classic/DipoleFieldTest.cpp b/src/Classic/DipoleFieldTest.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/AcceleratingField.h b/src/Classic/Fields/AcceleratingField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DDynamic.cpp b/src/Classic/Fields/Astra1DDynamic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DDynamic.h b/src/Classic/Fields/Astra1DDynamic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DDynamic_fast.cpp b/src/Classic/Fields/Astra1DDynamic_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DDynamic_fast.h b/src/Classic/Fields/Astra1DDynamic_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DElectroStatic.cpp b/src/Classic/Fields/Astra1DElectroStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DElectroStatic.h b/src/Classic/Fields/Astra1DElectroStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DElectroStatic_fast.cpp b/src/Classic/Fields/Astra1DElectroStatic_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DElectroStatic_fast.h b/src/Classic/Fields/Astra1DElectroStatic_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DMagnetoStatic.cpp b/src/Classic/Fields/Astra1DMagnetoStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DMagnetoStatic.h b/src/Classic/Fields/Astra1DMagnetoStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DMagnetoStatic_fast.cpp b/src/Classic/Fields/Astra1DMagnetoStatic_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1DMagnetoStatic_fast.h b/src/Classic/Fields/Astra1DMagnetoStatic_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1D_fast.cpp b/src/Classic/Fields/Astra1D_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Astra1D_fast.h b/src/Classic/Fields/Astra1D_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/BDipoleField.cpp b/src/Classic/Fields/BDipoleField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/BDipoleField.h b/src/Classic/Fields/BDipoleField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/BMultipoleField.cpp b/src/Classic/Fields/BMultipoleField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/BMultipoleField.h b/src/Classic/Fields/BMultipoleField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/BSingleMultipoleField.h b/src/Classic/Fields/BSingleMultipoleField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/CMakeLists.txt b/src/Classic/Fields/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstBField.cpp b/src/Classic/Fields/ConstBField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstBField.h b/src/Classic/Fields/ConstBField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstBzField.cpp b/src/Classic/Fields/ConstBzField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstBzField.h b/src/Classic/Fields/ConstBzField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstEField.cpp b/src/Classic/Fields/ConstEField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstEField.h b/src/Classic/Fields/ConstEField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstEzField.cpp b/src/Classic/Fields/ConstEzField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/ConstEzField.h b/src/Classic/Fields/ConstEzField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/EDipoleField.cpp b/src/Classic/Fields/EDipoleField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/EDipoleField.h b/src/Classic/Fields/EDipoleField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/EMField.cpp b/src/Classic/Fields/EMField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/EMField.h b/src/Classic/Fields/EMField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DDynamic.cpp b/src/Classic/Fields/FM1DDynamic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DDynamic.h b/src/Classic/Fields/FM1DDynamic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DDynamic_fast.cpp b/src/Classic/Fields/FM1DDynamic_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DDynamic_fast.h b/src/Classic/Fields/FM1DDynamic_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DElectroStatic.cpp b/src/Classic/Fields/FM1DElectroStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DElectroStatic.h b/src/Classic/Fields/FM1DElectroStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DElectroStatic_fast.cpp b/src/Classic/Fields/FM1DElectroStatic_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DElectroStatic_fast.h b/src/Classic/Fields/FM1DElectroStatic_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DMagnetoStatic.cpp b/src/Classic/Fields/FM1DMagnetoStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DMagnetoStatic.h b/src/Classic/Fields/FM1DMagnetoStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DMagnetoStatic_fast.cpp b/src/Classic/Fields/FM1DMagnetoStatic_fast.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DMagnetoStatic_fast.h b/src/Classic/Fields/FM1DMagnetoStatic_fast.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DProfile1.cpp b/src/Classic/Fields/FM1DProfile1.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DProfile1.h b/src/Classic/Fields/FM1DProfile1.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DProfile2.cpp b/src/Classic/Fields/FM1DProfile2.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM1DProfile2.h b/src/Classic/Fields/FM1DProfile2.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM2DDynamic.cpp b/src/Classic/Fields/FM2DDynamic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM2DDynamic.h b/src/Classic/Fields/FM2DDynamic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM2DElectroStatic.cpp b/src/Classic/Fields/FM2DElectroStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM2DElectroStatic.h b/src/Classic/Fields/FM2DElectroStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM2DMagnetoStatic.cpp b/src/Classic/Fields/FM2DMagnetoStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM2DMagnetoStatic.h b/src/Classic/Fields/FM2DMagnetoStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DDynamic.cpp b/src/Classic/Fields/FM3DDynamic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DDynamic.h b/src/Classic/Fields/FM3DDynamic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DH5Block.cpp b/src/Classic/Fields/FM3DH5Block.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DH5Block.h b/src/Classic/Fields/FM3DH5Block.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DH5Block_nonscale.cpp b/src/Classic/Fields/FM3DH5Block_nonscale.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DH5Block_nonscale.h b/src/Classic/Fields/FM3DH5Block_nonscale.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DMagnetoStatic.cpp b/src/Classic/Fields/FM3DMagnetoStatic.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DMagnetoStatic.h b/src/Classic/Fields/FM3DMagnetoStatic.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DMagnetoStaticExtended.cpp b/src/Classic/Fields/FM3DMagnetoStaticExtended.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DMagnetoStaticExtended.h b/src/Classic/Fields/FM3DMagnetoStaticExtended.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DMagnetoStaticH5Block.cpp b/src/Classic/Fields/FM3DMagnetoStaticH5Block.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FM3DMagnetoStaticH5Block.h b/src/Classic/Fields/FM3DMagnetoStaticH5Block.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FMDummy.cpp b/src/Classic/Fields/FMDummy.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/FMDummy.h b/src/Classic/Fields/FMDummy.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Fieldmap.cpp b/src/Classic/Fields/Fieldmap.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Fieldmap.h b/src/Classic/Fields/Fieldmap.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Fieldmap.hpp b/src/Classic/Fields/Fieldmap.hpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/CMakeLists.txt b/src/Classic/Fields/Interpolation/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.cpp b/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.h b/src/Classic/Fields/Interpolation/Interpolator3dGridTo1d.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.cpp b/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.h b/src/Classic/Fields/Interpolation/Interpolator3dGridTo3d.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/MMatrix.cpp b/src/Classic/Fields/Interpolation/MMatrix.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/MMatrix.h b/src/Classic/Fields/Interpolation/MMatrix.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/MVector.cpp b/src/Classic/Fields/Interpolation/MVector.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/MVector.h b/src/Classic/Fields/Interpolation/MVector.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Mesh-inl.icc b/src/Classic/Fields/Interpolation/Mesh-inl.icc old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Mesh.cpp b/src/Classic/Fields/Interpolation/Mesh.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/Mesh.h b/src/Classic/Fields/Interpolation/Mesh.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/NDGrid.cpp b/src/Classic/Fields/Interpolation/NDGrid.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/NDGrid.h b/src/Classic/Fields/Interpolation/NDGrid.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/PPSolveFactory.cpp b/src/Classic/Fields/Interpolation/PPSolveFactory.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/PPSolveFactory.h b/src/Classic/Fields/Interpolation/PPSolveFactory.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/PolynomialCoefficient.cpp b/src/Classic/Fields/Interpolation/PolynomialCoefficient.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/PolynomialCoefficient.h b/src/Classic/Fields/Interpolation/PolynomialCoefficient.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/PolynomialPatch.cpp b/src/Classic/Fields/Interpolation/PolynomialPatch.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/PolynomialPatch.h b/src/Classic/Fields/Interpolation/PolynomialPatch.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/SolveFactory.cpp b/src/Classic/Fields/Interpolation/SolveFactory.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/SolveFactory.h b/src/Classic/Fields/Interpolation/SolveFactory.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/SquarePolynomialVector.cpp b/src/Classic/Fields/Interpolation/SquarePolynomialVector.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/SquarePolynomialVector.h b/src/Classic/Fields/Interpolation/SquarePolynomialVector.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/ThreeDGrid.cpp b/src/Classic/Fields/Interpolation/ThreeDGrid.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/ThreeDGrid.h b/src/Classic/Fields/Interpolation/ThreeDGrid.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/TriLinearInterpolator.cpp b/src/Classic/Fields/Interpolation/TriLinearInterpolator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/TriLinearInterpolator.h b/src/Classic/Fields/Interpolation/TriLinearInterpolator.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/TwoDGrid.cpp b/src/Classic/Fields/Interpolation/TwoDGrid.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/TwoDGrid.h b/src/Classic/Fields/Interpolation/TwoDGrid.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/VectorMap.cpp b/src/Classic/Fields/Interpolation/VectorMap.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/VectorMap.h b/src/Classic/Fields/Interpolation/VectorMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/Interpolation/polynomial_solve_with_smoothing.tex b/src/Classic/Fields/Interpolation/polynomial_solve_with_smoothing.tex old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/NullField.cpp b/src/Classic/Fields/NullField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/NullField.h b/src/Classic/Fields/NullField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/OscillatingField.h b/src/Classic/Fields/OscillatingField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/SectorField.cpp b/src/Classic/Fields/SectorField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/SectorField.h b/src/Classic/Fields/SectorField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/SectorMagneticFieldMap.cpp b/src/Classic/Fields/SectorMagneticFieldMap.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/SectorMagneticFieldMap.h b/src/Classic/Fields/SectorMagneticFieldMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/StaticElectricField.cpp b/src/Classic/Fields/StaticElectricField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/StaticElectricField.h b/src/Classic/Fields/StaticElectricField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/StaticMagneticField.cpp b/src/Classic/Fields/StaticMagneticField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Fields/StaticMagneticField.h b/src/Classic/Fields/StaticMagneticField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/CMakeLists.txt b/src/Classic/Filters/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/Filter.h b/src/Classic/Filters/Filter.h old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/Filters.h b/src/Classic/Filters/Filters.h old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/FixedFFTLowPass.cpp b/src/Classic/Filters/FixedFFTLowPass.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/FixedFFTLowPass.h b/src/Classic/Filters/FixedFFTLowPass.h old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/RelativeFFTLowPass.cpp b/src/Classic/Filters/RelativeFFTLowPass.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/RelativeFFTLowPass.h b/src/Classic/Filters/RelativeFFTLowPass.h old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/SavitzkyGolay.cpp b/src/Classic/Filters/SavitzkyGolay.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/SavitzkyGolay.h b/src/Classic/Filters/SavitzkyGolay.h old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/Stencil.cpp b/src/Classic/Filters/Stencil.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Filters/Stencil.h b/src/Classic/Filters/Stencil.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/CMakeLists.txt b/src/Classic/FixedAlgebra/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/DragtFinnMap.cpp b/src/Classic/FixedAlgebra/DragtFinnMap.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/DragtFinnMap.h b/src/Classic/FixedAlgebra/DragtFinnMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/DragtFinnNormalForm.h b/src/Classic/FixedAlgebra/DragtFinnNormalForm.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FArray1D.h b/src/Classic/FixedAlgebra/FArray1D.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FArray2D.h b/src/Classic/FixedAlgebra/FArray2D.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FComplexEigen.h b/src/Classic/FixedAlgebra/FComplexEigen.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FDoubleEigen.h b/src/Classic/FixedAlgebra/FDoubleEigen.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FDynamicFP.h b/src/Classic/FixedAlgebra/FDynamicFP.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FLUMatrix.h b/src/Classic/FixedAlgebra/FLUMatrix.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FLieGenerator.cpp b/src/Classic/FixedAlgebra/FLieGenerator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FLieGenerator.h b/src/Classic/FixedAlgebra/FLieGenerator.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FMatrix.h b/src/Classic/FixedAlgebra/FMatrix.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FMonomial.h b/src/Classic/FixedAlgebra/FMonomial.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FNormalForm.h b/src/Classic/FixedAlgebra/FNormalForm.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FSlice.h b/src/Classic/FixedAlgebra/FSlice.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FStaticFP.h b/src/Classic/FixedAlgebra/FStaticFP.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FTps.cpp b/src/Classic/FixedAlgebra/FTps.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FTps.h b/src/Classic/FixedAlgebra/FTps.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FTpsData.h b/src/Classic/FixedAlgebra/FTpsData.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FTpsMath.h b/src/Classic/FixedAlgebra/FTpsMath.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FVector.h b/src/Classic/FixedAlgebra/FVector.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FVps.cpp b/src/Classic/FixedAlgebra/FVps.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/FVps.h b/src/Classic/FixedAlgebra/FVps.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/LinearFun.cpp b/src/Classic/FixedAlgebra/LinearFun.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/LinearFun.h b/src/Classic/FixedAlgebra/LinearFun.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/LinearMap.cpp b/src/Classic/FixedAlgebra/LinearMap.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/LinearMap.h b/src/Classic/FixedAlgebra/LinearMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/LinearMath.h b/src/Classic/FixedAlgebra/LinearMath.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/Taylor.cpp b/src/Classic/FixedAlgebra/Taylor.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/Taylor.h b/src/Classic/FixedAlgebra/Taylor.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/TransportFun.cpp b/src/Classic/FixedAlgebra/TransportFun.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/TransportFun.h b/src/Classic/FixedAlgebra/TransportFun.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/TransportMap.cpp b/src/Classic/FixedAlgebra/TransportMap.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/TransportMap.h b/src/Classic/FixedAlgebra/TransportMap.h old mode 100755 new mode 100644 diff --git a/src/Classic/FixedAlgebra/TransportMath.h b/src/Classic/FixedAlgebra/TransportMath.h old mode 100755 new mode 100644 diff --git a/src/Classic/Main.cpp b/src/Classic/Main.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/MemoryManagement/CMakeLists.txt b/src/Classic/MemoryManagement/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/MemoryManagement/OwnPtr.h b/src/Classic/MemoryManagement/OwnPtr.h old mode 100755 new mode 100644 diff --git a/src/Classic/MemoryManagement/Pointer.h b/src/Classic/MemoryManagement/Pointer.h old mode 100755 new mode 100644 diff --git a/src/Classic/MemoryManagement/RCObject.h b/src/Classic/MemoryManagement/RCObject.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/AbsFileStream.cpp b/src/Classic/Parser/AbsFileStream.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/AbsFileStream.h b/src/Classic/Parser/AbsFileStream.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/CMakeLists.txt b/src/Classic/Parser/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/FileStream.cpp b/src/Classic/Parser/FileStream.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/FileStream.h b/src/Classic/Parser/FileStream.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/Parser.h b/src/Classic/Parser/Parser.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/SimpleStatement.cpp b/src/Classic/Parser/SimpleStatement.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/SimpleStatement.h b/src/Classic/Parser/SimpleStatement.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/Statement.cpp b/src/Classic/Parser/Statement.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/Statement.h b/src/Classic/Parser/Statement.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/StringStream.cpp b/src/Classic/Parser/StringStream.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/StringStream.h b/src/Classic/Parser/StringStream.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/TerminalStream.cpp b/src/Classic/Parser/TerminalStream.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/TerminalStream.h b/src/Classic/Parser/TerminalStream.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/Token.cpp b/src/Classic/Parser/Token.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/Token.h b/src/Classic/Parser/Token.h old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/TokenStream.cpp b/src/Classic/Parser/TokenStream.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Parser/TokenStream.h b/src/Classic/Parser/TokenStream.h old mode 100755 new mode 100644 diff --git a/src/Classic/Physics/CMakeLists.txt b/src/Classic/Physics/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Physics/Physics.h b/src/Classic/Physics/Physics.h old mode 100755 new mode 100644 diff --git a/src/Classic/ReadMe b/src/Classic/ReadMe old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CMakeLists.txt b/src/Classic/Solvers/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CSRIGFWakeFunction.cpp b/src/Classic/Solvers/CSRIGFWakeFunction.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CSRIGFWakeFunction.hh b/src/Classic/Solvers/CSRIGFWakeFunction.hh old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CSRWakeFunction.cpp b/src/Classic/Solvers/CSRWakeFunction.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CSRWakeFunction.hh b/src/Classic/Solvers/CSRWakeFunction.hh old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CollimatorPhysics.cpp b/src/Classic/Solvers/CollimatorPhysics.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/CollimatorPhysics.hh b/src/Classic/Solvers/CollimatorPhysics.hh old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/GreenWakeFunction.cpp b/src/Classic/Solvers/GreenWakeFunction.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/GreenWakeFunction.hh b/src/Classic/Solvers/GreenWakeFunction.hh old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/ParticleMatterInteractionHandler.hh b/src/Classic/Solvers/ParticleMatterInteractionHandler.hh old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/TestLambda.h b/src/Classic/Solvers/TestLambda.h old mode 100755 new mode 100644 diff --git a/src/Classic/Solvers/WakeFunction.hh b/src/Classic/Solvers/WakeFunction.hh old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/CMakeLists.txt b/src/Classic/Structure/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/LossDataSink.cpp b/src/Classic/Structure/LossDataSink.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/LossDataSink.h b/src/Classic/Structure/LossDataSink.h old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/MeshGenerator.cpp b/src/Classic/Structure/MeshGenerator.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/MeshGenerator.h b/src/Classic/Structure/MeshGenerator.h old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/PeakFinder.cpp b/src/Classic/Structure/PeakFinder.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Structure/PeakFinder.h b/src/Classic/Structure/PeakFinder.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ArithmeticError.cpp b/src/Classic/Utilities/ArithmeticError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ArithmeticError.h b/src/Classic/Utilities/ArithmeticError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/AttributeError.cpp b/src/Classic/Utilities/AttributeError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/AttributeError.h b/src/Classic/Utilities/AttributeError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/CLRangeError.cpp b/src/Classic/Utilities/CLRangeError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/CLRangeError.h b/src/Classic/Utilities/CLRangeError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/CMakeLists.txt b/src/Classic/Utilities/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ClassicException.cpp b/src/Classic/Utilities/ClassicException.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ClassicException.h b/src/Classic/Utilities/ClassicException.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ClassicField.cpp b/src/Classic/Utilities/ClassicField.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ClassicField.h b/src/Classic/Utilities/ClassicField.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ClassicRandom.cpp b/src/Classic/Utilities/ClassicRandom.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ClassicRandom.h b/src/Classic/Utilities/ClassicRandom.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ComplexErrorFun.cpp b/src/Classic/Utilities/ComplexErrorFun.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ComplexErrorFun.h b/src/Classic/Utilities/ComplexErrorFun.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ConvergenceError.cpp b/src/Classic/Utilities/ConvergenceError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ConvergenceError.h b/src/Classic/Utilities/ConvergenceError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/DivideError.cpp b/src/Classic/Utilities/DivideError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/DivideError.h b/src/Classic/Utilities/DivideError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/DomainError.cpp b/src/Classic/Utilities/DomainError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/DomainError.h b/src/Classic/Utilities/DomainError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/EigenvalueError.cpp b/src/Classic/Utilities/EigenvalueError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/EigenvalueError.h b/src/Classic/Utilities/EigenvalueError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/FormatError.cpp b/src/Classic/Utilities/FormatError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/FormatError.h b/src/Classic/Utilities/FormatError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/Gauss.cpp b/src/Classic/Utilities/Gauss.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/Gauss.h b/src/Classic/Utilities/Gauss.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/GeneralClassicException.cpp b/src/Classic/Utilities/GeneralClassicException.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/GeneralClassicException.h b/src/Classic/Utilities/GeneralClassicException.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/InverseGauss.cpp b/src/Classic/Utilities/InverseGauss.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/InverseGauss.h b/src/Classic/Utilities/InverseGauss.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/LogicalError.cpp b/src/Classic/Utilities/LogicalError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/LogicalError.h b/src/Classic/Utilities/LogicalError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/NormalFormError.cpp b/src/Classic/Utilities/NormalFormError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/NormalFormError.h b/src/Classic/Utilities/NormalFormError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/OptionTypes.h b/src/Classic/Utilities/OptionTypes.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/Options.cpp b/src/Classic/Utilities/Options.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/Options.h b/src/Classic/Utilities/Options.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/OverflowError.cpp b/src/Classic/Utilities/OverflowError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/OverflowError.h b/src/Classic/Utilities/OverflowError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ParseError.cpp b/src/Classic/Utilities/ParseError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/ParseError.h b/src/Classic/Utilities/ParseError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/RingSection.cpp b/src/Classic/Utilities/RingSection.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/RingSection.h b/src/Classic/Utilities/RingSection.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/SingularMatrixError.cpp b/src/Classic/Utilities/SingularMatrixError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/SingularMatrixError.h b/src/Classic/Utilities/SingularMatrixError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/SizeError.cpp b/src/Classic/Utilities/SizeError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/SizeError.h b/src/Classic/Utilities/SizeError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/SwitcherError.cpp b/src/Classic/Utilities/SwitcherError.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/SwitcherError.h b/src/Classic/Utilities/SwitcherError.h old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/Util.cpp b/src/Classic/Utilities/Util.cpp old mode 100755 new mode 100644 diff --git a/src/Classic/Utilities/Util.h b/src/Classic/Utilities/Util.h old mode 100755 new mode 100644 diff --git a/src/Classic/autogen-gele.sh b/src/Classic/autogen-gele.sh old mode 100755 new mode 100644 diff --git a/src/Classic/autogen-palu.sh b/src/Classic/autogen-palu.sh old mode 100755 new mode 100644 diff --git a/src/Classic/autogen-regression.sh b/src/Classic/autogen-regression.sh old mode 100755 new mode 100644 diff --git a/src/Classic/autogen.sh b/src/Classic/autogen.sh old mode 100755 new mode 100644 diff --git a/src/Classic/configure.ac b/src/Classic/configure.ac old mode 100755 new mode 100644 diff --git a/src/Copyright.readme b/src/Copyright.readme old mode 100755 new mode 100644 diff --git a/src/Distribution/CMakeLists.txt b/src/Distribution/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Distribution/ClosedOrbitFinder.h b/src/Distribution/ClosedOrbitFinder.h old mode 100755 new mode 100644 diff --git a/src/Distribution/Distribution.cpp b/src/Distribution/Distribution.cpp old mode 100755 new mode 100644 diff --git a/src/Distribution/Distribution.h b/src/Distribution/Distribution.h old mode 100755 new mode 100644 diff --git a/src/Distribution/Harmonics.h b/src/Distribution/Harmonics.h old mode 100755 new mode 100644 diff --git a/src/Distribution/LaserProfile.cpp b/src/Distribution/LaserProfile.cpp old mode 100755 new mode 100644 diff --git a/src/Distribution/LaserProfile.h b/src/Distribution/LaserProfile.h old mode 100755 new mode 100644 diff --git a/src/Distribution/MagneticField.cpp b/src/Distribution/MagneticField.cpp old mode 100755 new mode 100644 diff --git a/src/Distribution/MagneticField.h b/src/Distribution/MagneticField.h old mode 100755 new mode 100644 diff --git a/src/Distribution/MapGenerator.h b/src/Distribution/MapGenerator.h old mode 100755 new mode 100644 diff --git a/src/Distribution/SigmaGenerator.h b/src/Distribution/SigmaGenerator.h old mode 100755 new mode 100644 diff --git a/src/Distribution/halton1d_sequence.cpp b/src/Distribution/halton1d_sequence.cpp old mode 100755 new mode 100644 diff --git a/src/Distribution/halton1d_sequence.hh b/src/Distribution/halton1d_sequence.hh old mode 100755 new mode 100644 diff --git a/src/Distribution/matrix_vector_operation.h b/src/Distribution/matrix_vector_operation.h old mode 100755 new mode 100644 diff --git a/src/Distribution/rdm.h b/src/Distribution/rdm.h old mode 100755 new mode 100644 diff --git a/src/Editor/CMakeLists.txt b/src/Editor/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Editor/Edit.cpp b/src/Editor/Edit.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/Edit.h b/src/Editor/Edit.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditCmd.cpp b/src/Editor/EditCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditCmd.h b/src/Editor/EditCmd.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditCycle.cpp b/src/Editor/EditCycle.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditCycle.h b/src/Editor/EditCycle.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditEnd.cpp b/src/Editor/EditEnd.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditEnd.h b/src/Editor/EditEnd.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditFlatten.cpp b/src/Editor/EditFlatten.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditFlatten.h b/src/Editor/EditFlatten.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditInstall.cpp b/src/Editor/EditInstall.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditInstall.h b/src/Editor/EditInstall.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditMove.cpp b/src/Editor/EditMove.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditMove.h b/src/Editor/EditMove.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditParser.cpp b/src/Editor/EditParser.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditParser.h b/src/Editor/EditParser.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditReflect.cpp b/src/Editor/EditReflect.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditReflect.h b/src/Editor/EditReflect.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditRemove.cpp b/src/Editor/EditRemove.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditRemove.h b/src/Editor/EditRemove.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditReplace.cpp b/src/Editor/EditReplace.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditReplace.h b/src/Editor/EditReplace.h old mode 100755 new mode 100644 diff --git a/src/Editor/EditSelect.cpp b/src/Editor/EditSelect.cpp old mode 100755 new mode 100644 diff --git a/src/Editor/EditSelect.h b/src/Editor/EditSelect.h old mode 100755 new mode 100644 diff --git a/src/Elements/AttCell.cpp b/src/Elements/AttCell.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/AttCell.h b/src/Elements/AttCell.h old mode 100755 new mode 100644 diff --git a/src/Elements/CMakeLists.txt b/src/Elements/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBeamBeam.cpp b/src/Elements/OpalBeamBeam.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBeamBeam.h b/src/Elements/OpalBeamBeam.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBeamBeam3D.cpp b/src/Elements/OpalBeamBeam3D.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBeamBeam3D.h b/src/Elements/OpalBeamBeam3D.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBeamline.cpp b/src/Elements/OpalBeamline.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBeamline.h b/src/Elements/OpalBeamline.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBend.cpp b/src/Elements/OpalBend.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalBend.h b/src/Elements/OpalBend.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCCollimator.cpp b/src/Elements/OpalCCollimator.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCCollimator.h b/src/Elements/OpalCCollimator.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCavity.cpp b/src/Elements/OpalCavity.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCavity.h b/src/Elements/OpalCavity.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCyclotron.cpp b/src/Elements/OpalCyclotron.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCyclotron.h b/src/Elements/OpalCyclotron.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCyclotronValley.cpp b/src/Elements/OpalCyclotronValley.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalCyclotronValley.h b/src/Elements/OpalCyclotronValley.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalDegrader.cpp b/src/Elements/OpalDegrader.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalDegrader.h b/src/Elements/OpalDegrader.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalDrift.cpp b/src/Elements/OpalDrift.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalDrift.h b/src/Elements/OpalDrift.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalECollimator.cpp b/src/Elements/OpalECollimator.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalECollimator.h b/src/Elements/OpalECollimator.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalElement.cpp b/src/Elements/OpalElement.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalElement.h b/src/Elements/OpalElement.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalHKicker.cpp b/src/Elements/OpalHKicker.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalHKicker.h b/src/Elements/OpalHKicker.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalHMonitor.cpp b/src/Elements/OpalHMonitor.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalHMonitor.h b/src/Elements/OpalHMonitor.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalInstrument.cpp b/src/Elements/OpalInstrument.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalInstrument.h b/src/Elements/OpalInstrument.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalKicker.cpp b/src/Elements/OpalKicker.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalKicker.h b/src/Elements/OpalKicker.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMarker.cpp b/src/Elements/OpalMarker.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMarker.h b/src/Elements/OpalMarker.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMonitor.cpp b/src/Elements/OpalMonitor.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMonitor.h b/src/Elements/OpalMonitor.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMultipole.cpp b/src/Elements/OpalMultipole.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMultipole.h b/src/Elements/OpalMultipole.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMultipoleT.cpp b/src/Elements/OpalMultipoleT.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalMultipoleT.h b/src/Elements/OpalMultipoleT.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOctupole.cpp b/src/Elements/OpalOctupole.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOctupole.h b/src/Elements/OpalOctupole.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalGlobalCartesianOffset.cpp b/src/Elements/OpalOffset/OpalGlobalCartesianOffset.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalGlobalCartesianOffset.h b/src/Elements/OpalOffset/OpalGlobalCartesianOffset.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.cpp b/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.h b/src/Elements/OpalOffset/OpalGlobalCylindricalOffset.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalLocalCartesianOffset.cpp b/src/Elements/OpalOffset/OpalLocalCartesianOffset.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalLocalCartesianOffset.h b/src/Elements/OpalOffset/OpalLocalCartesianOffset.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalLocalCylindricalOffset.cpp b/src/Elements/OpalOffset/OpalLocalCylindricalOffset.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalOffset/OpalLocalCylindricalOffset.h b/src/Elements/OpalOffset/OpalLocalCylindricalOffset.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalParallelPlate.cpp b/src/Elements/OpalParallelPlate.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalParallelPlate.h b/src/Elements/OpalParallelPlate.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalPatch.cpp b/src/Elements/OpalPatch.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalPatch.h b/src/Elements/OpalPatch.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalPepperPot.cpp b/src/Elements/OpalPepperPot.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalPepperPot.h b/src/Elements/OpalPepperPot.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalPolynomialTimeDependence.cpp b/src/Elements/OpalPolynomialTimeDependence.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalPolynomialTimeDependence.h b/src/Elements/OpalPolynomialTimeDependence.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalProbe.cpp b/src/Elements/OpalProbe.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalProbe.h b/src/Elements/OpalProbe.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalQuadrupole.cpp b/src/Elements/OpalQuadrupole.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalQuadrupole.h b/src/Elements/OpalQuadrupole.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRBend.cpp b/src/Elements/OpalRBend.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRBend.h b/src/Elements/OpalRBend.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRBend3D.cpp b/src/Elements/OpalRBend3D.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRBend3D.h b/src/Elements/OpalRBend3D.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRCollimator.cpp b/src/Elements/OpalRCollimator.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRCollimator.h b/src/Elements/OpalRCollimator.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRingDefinition.cpp b/src/Elements/OpalRingDefinition.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalRingDefinition.h b/src/Elements/OpalRingDefinition.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSBend.cpp b/src/Elements/OpalSBend.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSBend.h b/src/Elements/OpalSBend.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSBend3D.cpp b/src/Elements/OpalSBend3D.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSBend3D.h b/src/Elements/OpalSBend3D.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSRot.cpp b/src/Elements/OpalSRot.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSRot.h b/src/Elements/OpalSRot.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalScalingFFAGMagnet.cpp b/src/Elements/OpalScalingFFAGMagnet.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalScalingFFAGMagnet.h b/src/Elements/OpalScalingFFAGMagnet.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSeparator.cpp b/src/Elements/OpalSeparator.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSeparator.h b/src/Elements/OpalSeparator.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSeptum.cpp b/src/Elements/OpalSeptum.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSeptum.h b/src/Elements/OpalSeptum.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSextupole.cpp b/src/Elements/OpalSextupole.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSextupole.h b/src/Elements/OpalSextupole.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSlit.cpp b/src/Elements/OpalSlit.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSlit.h b/src/Elements/OpalSlit.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSolenoid.cpp b/src/Elements/OpalSolenoid.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSolenoid.h b/src/Elements/OpalSolenoid.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSource.cpp b/src/Elements/OpalSource.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalSource.h b/src/Elements/OpalSource.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalStripper.cpp b/src/Elements/OpalStripper.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalStripper.h b/src/Elements/OpalStripper.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalTravelingWave.cpp b/src/Elements/OpalTravelingWave.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalTravelingWave.h b/src/Elements/OpalTravelingWave.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalVKicker.cpp b/src/Elements/OpalVKicker.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalVKicker.h b/src/Elements/OpalVKicker.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalVMonitor.cpp b/src/Elements/OpalVMonitor.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalVMonitor.h b/src/Elements/OpalVMonitor.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalVariableRFCavity.cpp b/src/Elements/OpalVariableRFCavity.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalVariableRFCavity.h b/src/Elements/OpalVariableRFCavity.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalWire.cpp b/src/Elements/OpalWire.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalWire.h b/src/Elements/OpalWire.h old mode 100755 new mode 100644 diff --git a/src/Elements/OpalYRot.cpp b/src/Elements/OpalYRot.cpp old mode 100755 new mode 100644 diff --git a/src/Elements/OpalYRot.h b/src/Elements/OpalYRot.h old mode 100755 new mode 100644 diff --git a/src/Errors/AlignBase.cpp b/src/Errors/AlignBase.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/AlignBase.h b/src/Errors/AlignBase.h old mode 100755 new mode 100644 diff --git a/src/Errors/AlignHandler.cpp b/src/Errors/AlignHandler.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/AlignHandler.h b/src/Errors/AlignHandler.h old mode 100755 new mode 100644 diff --git a/src/Errors/AlignReader.cpp b/src/Errors/AlignReader.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/AlignReader.h b/src/Errors/AlignReader.h old mode 100755 new mode 100644 diff --git a/src/Errors/AlignRemover.cpp b/src/Errors/AlignRemover.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/AlignRemover.h b/src/Errors/AlignRemover.h old mode 100755 new mode 100644 diff --git a/src/Errors/AlignWriter.cpp b/src/Errors/AlignWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/AlignWriter.h b/src/Errors/AlignWriter.h old mode 100755 new mode 100644 diff --git a/src/Errors/CMakeLists.txt b/src/Errors/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Errors/Error.cpp b/src/Errors/Error.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/Error.h b/src/Errors/Error.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorAlign.cpp b/src/Errors/ErrorAlign.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorAlign.h b/src/Errors/ErrorAlign.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorCmd.cpp b/src/Errors/ErrorCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorCmd.h b/src/Errors/ErrorCmd.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorComp.cpp b/src/Errors/ErrorComp.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorComp.h b/src/Errors/ErrorComp.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorEnd.cpp b/src/Errors/ErrorEnd.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorEnd.h b/src/Errors/ErrorEnd.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorField.cpp b/src/Errors/ErrorField.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorField.h b/src/Errors/ErrorField.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorParser.cpp b/src/Errors/ErrorParser.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorParser.h b/src/Errors/ErrorParser.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorPrint.cpp b/src/Errors/ErrorPrint.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorPrint.h b/src/Errors/ErrorPrint.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorSave.cpp b/src/Errors/ErrorSave.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorSave.h b/src/Errors/ErrorSave.h old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorSelect.cpp b/src/Errors/ErrorSelect.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/ErrorSelect.h b/src/Errors/ErrorSelect.h old mode 100755 new mode 100644 diff --git a/src/Errors/MPBase.cpp b/src/Errors/MPBase.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/MPBase.h b/src/Errors/MPBase.h old mode 100755 new mode 100644 diff --git a/src/Errors/MPHandler.cpp b/src/Errors/MPHandler.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/MPHandler.h b/src/Errors/MPHandler.h old mode 100755 new mode 100644 diff --git a/src/Errors/MPReader.cpp b/src/Errors/MPReader.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/MPReader.h b/src/Errors/MPReader.h old mode 100755 new mode 100644 diff --git a/src/Errors/MPRemover.cpp b/src/Errors/MPRemover.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/MPRemover.h b/src/Errors/MPRemover.h old mode 100755 new mode 100644 diff --git a/src/Errors/MPWriter.cpp b/src/Errors/MPWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Errors/MPWriter.h b/src/Errors/MPWriter.h old mode 100755 new mode 100644 diff --git a/src/Expressions/AAutomatic.h b/src/Expressions/AAutomatic.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ABinary.h b/src/Expressions/ABinary.h old mode 100755 new mode 100644 diff --git a/src/Expressions/AColumn.cpp b/src/Expressions/AColumn.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/AColumn.h b/src/Expressions/AColumn.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ADeferred.h b/src/Expressions/ADeferred.h old mode 100755 new mode 100644 diff --git a/src/Expressions/AList.h b/src/Expressions/AList.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ARefAttr.h b/src/Expressions/ARefAttr.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ARefExpr.h b/src/Expressions/ARefExpr.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ARow.cpp b/src/Expressions/ARow.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/ARow.h b/src/Expressions/ARow.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ASUnary.h b/src/Expressions/ASUnary.h old mode 100755 new mode 100644 diff --git a/src/Expressions/ATable.cpp b/src/Expressions/ATable.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/ATable.h b/src/Expressions/ATable.h old mode 100755 new mode 100644 diff --git a/src/Expressions/AUnary.h b/src/Expressions/AUnary.h old mode 100755 new mode 100644 diff --git a/src/Expressions/AValue.h b/src/Expressions/AValue.h old mode 100755 new mode 100644 diff --git a/src/Expressions/CMakeLists.txt b/src/Expressions/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Expressions/Expressions.cpp b/src/Expressions/Expressions.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/Expressions.h b/src/Expressions/Expressions.h old mode 100755 new mode 100644 diff --git a/src/Expressions/Indexer.h b/src/Expressions/Indexer.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SAutomatic.h b/src/Expressions/SAutomatic.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SBinary.h b/src/Expressions/SBinary.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SCell.cpp b/src/Expressions/SCell.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/SCell.h b/src/Expressions/SCell.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SConstant.h b/src/Expressions/SConstant.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SDeferred.h b/src/Expressions/SDeferred.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SFunction.cpp b/src/Expressions/SFunction.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/SFunction.h b/src/Expressions/SFunction.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SHash.cpp b/src/Expressions/SHash.cpp old mode 100755 new mode 100644 diff --git a/src/Expressions/SHash.h b/src/Expressions/SHash.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SNull.h b/src/Expressions/SNull.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SRefAttr.h b/src/Expressions/SRefAttr.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SRefExpr.h b/src/Expressions/SRefExpr.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SUnary.h b/src/Expressions/SUnary.h old mode 100755 new mode 100644 diff --git a/src/Expressions/SValue.h b/src/Expressions/SValue.h old mode 100755 new mode 100644 diff --git a/src/Expressions/TFind.h b/src/Expressions/TFind.h old mode 100755 new mode 100644 diff --git a/src/Expressions/TFunction0.h b/src/Expressions/TFunction0.h old mode 100755 new mode 100644 diff --git a/src/Expressions/TFunction1.h b/src/Expressions/TFunction1.h old mode 100755 new mode 100644 diff --git a/src/Expressions/TFunction2.h b/src/Expressions/TFunction2.h old mode 100755 new mode 100644 diff --git a/src/Lines/CMakeLists.txt b/src/Lines/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Lines/FlatWriter.cpp b/src/Lines/FlatWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/FlatWriter.h b/src/Lines/FlatWriter.h old mode 100755 new mode 100644 diff --git a/src/Lines/Line.cpp b/src/Lines/Line.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/Line.h b/src/Lines/Line.h old mode 100755 new mode 100644 diff --git a/src/Lines/LineTemplate.cpp b/src/Lines/LineTemplate.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/LineTemplate.h b/src/Lines/LineTemplate.h old mode 100755 new mode 100644 diff --git a/src/Lines/Replacer.cpp b/src/Lines/Replacer.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/Replacer.h b/src/Lines/Replacer.h old mode 100755 new mode 100644 diff --git a/src/Lines/Sequence.cpp b/src/Lines/Sequence.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/Sequence.h b/src/Lines/Sequence.h old mode 100755 new mode 100644 diff --git a/src/Lines/SequenceMember.cpp b/src/Lines/SequenceMember.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/SequenceMember.h b/src/Lines/SequenceMember.h old mode 100755 new mode 100644 diff --git a/src/Lines/SequenceParser.cpp b/src/Lines/SequenceParser.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/SequenceParser.h b/src/Lines/SequenceParser.h old mode 100755 new mode 100644 diff --git a/src/Lines/SequenceTemplate.cpp b/src/Lines/SequenceTemplate.cpp old mode 100755 new mode 100644 diff --git a/src/Lines/SequenceTemplate.h b/src/Lines/SequenceTemplate.h old mode 100755 new mode 100644 diff --git a/src/Main.cpp b/src/Main.cpp old mode 100755 new mode 100644 diff --git a/src/Match/AbstractFun.cpp b/src/Match/AbstractFun.cpp old mode 100755 new mode 100644 diff --git a/src/Match/AbstractFun.h b/src/Match/AbstractFun.h old mode 100755 new mode 100644 diff --git a/src/Match/AbstractVar.cpp b/src/Match/AbstractVar.cpp old mode 100755 new mode 100644 diff --git a/src/Match/AbstractVar.h b/src/Match/AbstractVar.h old mode 100755 new mode 100644 diff --git a/src/Match/CMakeLists.txt b/src/Match/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Match/ConcreteFun.cpp b/src/Match/ConcreteFun.cpp old mode 100755 new mode 100644 diff --git a/src/Match/ConcreteFun.h b/src/Match/ConcreteFun.h old mode 100755 new mode 100644 diff --git a/src/Match/ConcreteVar.cpp b/src/Match/ConcreteVar.cpp old mode 100755 new mode 100644 diff --git a/src/Match/ConcreteVar.h b/src/Match/ConcreteVar.h old mode 100755 new mode 100644 diff --git a/src/Match/ConstraintCmd.cpp b/src/Match/ConstraintCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Match/ConstraintCmd.h b/src/Match/ConstraintCmd.h old mode 100755 new mode 100644 diff --git a/src/Match/LMDif.cpp b/src/Match/LMDif.cpp old mode 100755 new mode 100644 diff --git a/src/Match/LMDif.h b/src/Match/LMDif.h old mode 100755 new mode 100644 diff --git a/src/Match/Match.cpp b/src/Match/Match.cpp old mode 100755 new mode 100644 diff --git a/src/Match/Match.h b/src/Match/Match.h old mode 100755 new mode 100644 diff --git a/src/Match/MatchCmd.cpp b/src/Match/MatchCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Match/MatchCmd.h b/src/Match/MatchCmd.h old mode 100755 new mode 100644 diff --git a/src/Match/MatchEnd.cpp b/src/Match/MatchEnd.cpp old mode 100755 new mode 100644 diff --git a/src/Match/MatchEnd.h b/src/Match/MatchEnd.h old mode 100755 new mode 100644 diff --git a/src/Match/MatchLimits.h b/src/Match/MatchLimits.h old mode 100755 new mode 100644 diff --git a/src/Match/MatchOption.cpp b/src/Match/MatchOption.cpp old mode 100755 new mode 100644 diff --git a/src/Match/MatchOption.h b/src/Match/MatchOption.h old mode 100755 new mode 100644 diff --git a/src/Match/MatchParser.cpp b/src/Match/MatchParser.cpp old mode 100755 new mode 100644 diff --git a/src/Match/MatchParser.h b/src/Match/MatchParser.h old mode 100755 new mode 100644 diff --git a/src/Match/MatchState.h b/src/Match/MatchState.h old mode 100755 new mode 100644 diff --git a/src/Match/Migrad.cpp b/src/Match/Migrad.cpp old mode 100755 new mode 100644 diff --git a/src/Match/Migrad.h b/src/Match/Migrad.h old mode 100755 new mode 100644 diff --git a/src/Match/Simplex.cpp b/src/Match/Simplex.cpp old mode 100755 new mode 100644 diff --git a/src/Match/Simplex.h b/src/Match/Simplex.h old mode 100755 new mode 100644 diff --git a/src/Match/VaryCmd.cpp b/src/Match/VaryCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Match/VaryCmd.h b/src/Match/VaryCmd.h old mode 100755 new mode 100644 diff --git a/src/OpalConfigure/CMakeLists.txt b/src/OpalConfigure/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/OpalConfigure/Configure.cpp b/src/OpalConfigure/Configure.cpp old mode 100755 new mode 100644 diff --git a/src/OpalConfigure/Configure.h b/src/OpalConfigure/Configure.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/CMakeLists.txt b/src/OpalParser/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/OpalParser/CompoundStatement.cpp b/src/OpalParser/CompoundStatement.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/CompoundStatement.h b/src/OpalParser/CompoundStatement.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/IfStatement.cpp b/src/OpalParser/IfStatement.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/IfStatement.h b/src/OpalParser/IfStatement.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/Macro.cpp b/src/OpalParser/Macro.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/Macro.h b/src/OpalParser/Macro.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/MacroCmd.cpp b/src/OpalParser/MacroCmd.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/MacroCmd.h b/src/OpalParser/MacroCmd.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/MacroStream.cpp b/src/OpalParser/MacroStream.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/MacroStream.h b/src/OpalParser/MacroStream.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/OpalParser.cpp b/src/OpalParser/OpalParser.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/OpalParser.h b/src/OpalParser/OpalParser.h old mode 100755 new mode 100644 diff --git a/src/OpalParser/WhileStatement.cpp b/src/OpalParser/WhileStatement.cpp old mode 100755 new mode 100644 diff --git a/src/OpalParser/WhileStatement.h b/src/OpalParser/WhileStatement.h old mode 100755 new mode 100644 diff --git a/src/Optimize/CMakeLists.txt b/src/Optimize/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Optimize/Constraint.cpp b/src/Optimize/Constraint.cpp old mode 100755 new mode 100644 diff --git a/src/Optimize/Constraint.h b/src/Optimize/Constraint.h old mode 100755 new mode 100644 diff --git a/src/Optimize/DVar.cpp b/src/Optimize/DVar.cpp old mode 100755 new mode 100644 diff --git a/src/Optimize/DVar.h b/src/Optimize/DVar.h old mode 100755 new mode 100644 diff --git a/src/Optimize/Objective.cpp b/src/Optimize/Objective.cpp old mode 100755 new mode 100644 diff --git a/src/Optimize/Objective.h b/src/Optimize/Objective.h old mode 100755 new mode 100644 diff --git a/src/Optimize/OpalSimulation.cpp b/src/Optimize/OpalSimulation.cpp old mode 100755 new mode 100644 diff --git a/src/Optimize/OpalSimulation.h b/src/Optimize/OpalSimulation.h old mode 100755 new mode 100644 diff --git a/src/Optimize/OptimizeCmd.cpp b/src/Optimize/OptimizeCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Optimize/OptimizeCmd.h b/src/Optimize/OptimizeCmd.h old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/CMakeLists.txt b/src/PhysicsActions/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/Dynamic.cpp b/src/PhysicsActions/Dynamic.cpp old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/Dynamic.h b/src/PhysicsActions/Dynamic.h old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/MakeSequence.cpp b/src/PhysicsActions/MakeSequence.cpp old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/MakeSequence.h b/src/PhysicsActions/MakeSequence.h old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/SetIntegrator.cpp b/src/PhysicsActions/SetIntegrator.cpp old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/SetIntegrator.h b/src/PhysicsActions/SetIntegrator.h old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/Static.cpp b/src/PhysicsActions/Static.cpp old mode 100755 new mode 100644 diff --git a/src/PhysicsActions/Static.h b/src/PhysicsActions/Static.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/Amesos2BottomSolver.h b/src/Solvers/AMR_MG/Amesos2BottomSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/Amesos2BottomSolver.hpp b/src/Solvers/AMR_MG/Amesos2BottomSolver.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrBoundary.h b/src/Solvers/AMR_MG/AmrBoundary.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrDirichletBoundary.h b/src/Solvers/AMR_MG/AmrDirichletBoundary.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrInterpolater.h b/src/Solvers/AMR_MG/AmrInterpolater.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrLagrangeInterpolater.h b/src/Solvers/AMR_MG/AmrLagrangeInterpolater.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrLagrangeInterpolater.hpp b/src/Solvers/AMR_MG/AmrLagrangeInterpolater.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrMultiGrid.cpp b/src/Solvers/AMR_MG/AmrMultiGrid.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrMultiGrid.h b/src/Solvers/AMR_MG/AmrMultiGrid.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrMultiGridCore.h b/src/Solvers/AMR_MG/AmrMultiGridCore.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrMultiGridDefs.h b/src/Solvers/AMR_MG/AmrMultiGridDefs.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrMultiGridLevel.h b/src/Solvers/AMR_MG/AmrMultiGridLevel.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrMultiGridLevel.hpp b/src/Solvers/AMR_MG/AmrMultiGridLevel.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrOpenBoundary.h b/src/Solvers/AMR_MG/AmrOpenBoundary.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrPCInterpolater.h b/src/Solvers/AMR_MG/AmrPCInterpolater.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrPCInterpolater.hpp b/src/Solvers/AMR_MG/AmrPCInterpolater.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrPeriodicBoundary.h b/src/Solvers/AMR_MG/AmrPeriodicBoundary.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrPreconditioner.h b/src/Solvers/AMR_MG/AmrPreconditioner.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrSmoother.cpp b/src/Solvers/AMR_MG/AmrSmoother.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrSmoother.h b/src/Solvers/AMR_MG/AmrSmoother.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrTrilinearInterpolater.h b/src/Solvers/AMR_MG/AmrTrilinearInterpolater.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/AmrTrilinearInterpolater.hpp b/src/Solvers/AMR_MG/AmrTrilinearInterpolater.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/BelosBottomSolver.h b/src/Solvers/AMR_MG/BelosBottomSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/BelosBottomSolver.hpp b/src/Solvers/AMR_MG/BelosBottomSolver.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/BottomSolver.h b/src/Solvers/AMR_MG/BottomSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/CMakeLists.txt b/src/Solvers/AMR_MG/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/Ifpack2Preconditioner.h b/src/Solvers/AMR_MG/Ifpack2Preconditioner.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp b/src/Solvers/AMR_MG/Ifpack2Preconditioner.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/MueLuBottomSolver.h b/src/Solvers/AMR_MG/MueLuBottomSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/MueLuBottomSolver.hpp b/src/Solvers/AMR_MG/MueLuBottomSolver.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/MueLuPreconditioner.h b/src/Solvers/AMR_MG/MueLuPreconditioner.h old mode 100755 new mode 100644 diff --git a/src/Solvers/AMR_MG/MueLuPreconditioner.hpp b/src/Solvers/AMR_MG/MueLuPreconditioner.hpp old mode 100755 new mode 100644 diff --git a/src/Solvers/AmrPoissonSolver.h b/src/Solvers/AmrPoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/ArbitraryDomain.cpp b/src/Solvers/ArbitraryDomain.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/ArbitraryDomain.h b/src/Solvers/ArbitraryDomain.h old mode 100755 new mode 100644 diff --git a/src/Solvers/BoxCornerDomain.cpp b/src/Solvers/BoxCornerDomain.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/BoxCornerDomain.h b/src/Solvers/BoxCornerDomain.h old mode 100755 new mode 100644 diff --git a/src/Solvers/BoxLibSolvers/FMGPoissonSolver.cpp b/src/Solvers/BoxLibSolvers/FMGPoissonSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/BoxLibSolvers/FMGPoissonSolver.h b/src/Solvers/BoxLibSolvers/FMGPoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/CMakeLists.txt b/src/Solvers/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Solvers/EllipticDomain.cpp b/src/Solvers/EllipticDomain.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/EllipticDomain.h b/src/Solvers/EllipticDomain.h old mode 100755 new mode 100644 diff --git a/src/Solvers/FFTBoxPoissonSolver.cpp b/src/Solvers/FFTBoxPoissonSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/FFTBoxPoissonSolver.h b/src/Solvers/FFTBoxPoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/FFTPoissonSolver.cpp b/src/Solvers/FFTPoissonSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/FFTPoissonSolver.h b/src/Solvers/FFTPoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/IrregularDomain.h b/src/Solvers/IrregularDomain.h old mode 100755 new mode 100644 diff --git a/src/Solvers/MGPoissonSolver.cpp b/src/Solvers/MGPoissonSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/MGPoissonSolver.h b/src/Solvers/MGPoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/P3MPoissonSolver.cpp b/src/Solvers/P3MPoissonSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/P3MPoissonSolver.h b/src/Solvers/P3MPoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/PoissonSolver.h b/src/Solvers/PoissonSolver.h old mode 100755 new mode 100644 diff --git a/src/Solvers/RectangularDomain.cpp b/src/Solvers/RectangularDomain.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/RectangularDomain.h b/src/Solvers/RectangularDomain.h old mode 100755 new mode 100644 diff --git a/src/Solvers/TaperDomain.cpp b/src/Solvers/TaperDomain.cpp old mode 100755 new mode 100644 diff --git a/src/Solvers/TaperDomain.h b/src/Solvers/TaperDomain.h old mode 100755 new mode 100644 diff --git a/src/Steppers/BorisPusher.h b/src/Steppers/BorisPusher.h old mode 100755 new mode 100644 diff --git a/src/Steppers/CMakeLists.txt b/src/Steppers/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Steppers/LF2.h b/src/Steppers/LF2.h old mode 100755 new mode 100644 diff --git a/src/Steppers/LF2.hpp b/src/Steppers/LF2.hpp old mode 100755 new mode 100644 diff --git a/src/Steppers/RK4.h b/src/Steppers/RK4.h old mode 100755 new mode 100644 diff --git a/src/Steppers/RK4.hpp b/src/Steppers/RK4.hpp old mode 100755 new mode 100644 diff --git a/src/Steppers/Stepper.h b/src/Steppers/Stepper.h old mode 100755 new mode 100644 diff --git a/src/Steppers/Steppers.h b/src/Steppers/Steppers.h old mode 100755 new mode 100644 diff --git a/src/Structure/Beam.cpp b/src/Structure/Beam.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/Beam.h b/src/Structure/Beam.h old mode 100755 new mode 100644 diff --git a/src/Structure/BoundaryGeometry.cpp b/src/Structure/BoundaryGeometry.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/BoundaryGeometry.h b/src/Structure/BoundaryGeometry.h old mode 100755 new mode 100644 diff --git a/src/Structure/CMakeLists.txt b/src/Structure/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Structure/DataSink.cpp b/src/Structure/DataSink.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/DataSink.h b/src/Structure/DataSink.h old mode 100755 new mode 100644 diff --git a/src/Structure/FieldSolver.cpp b/src/Structure/FieldSolver.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/FieldSolver.h b/src/Structure/FieldSolver.h old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapper.cpp b/src/Structure/H5PartWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapper.h b/src/Structure/H5PartWrapper.h old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapperForPC.cpp b/src/Structure/H5PartWrapperForPC.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapperForPC.h b/src/Structure/H5PartWrapperForPC.h old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapperForPS.cpp b/src/Structure/H5PartWrapperForPS.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapperForPS.h b/src/Structure/H5PartWrapperForPS.h old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapperForPT.cpp b/src/Structure/H5PartWrapperForPT.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/H5PartWrapperForPT.h b/src/Structure/H5PartWrapperForPT.h old mode 100755 new mode 100644 diff --git a/src/Structure/IpplInfoWrapper.cpp b/src/Structure/IpplInfoWrapper.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/IpplInfoWrapper.h b/src/Structure/IpplInfoWrapper.h old mode 100755 new mode 100644 diff --git a/src/Structure/OpalInputInterpreter.cpp b/src/Structure/OpalInputInterpreter.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/OpalInputInterpreter.h b/src/Structure/OpalInputInterpreter.h old mode 100755 new mode 100644 diff --git a/src/Structure/OpalWake.cpp b/src/Structure/OpalWake.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/OpalWake.h b/src/Structure/OpalWake.h old mode 100755 new mode 100644 diff --git a/src/Structure/ParticleMatterInteraction.cpp b/src/Structure/ParticleMatterInteraction.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/ParticleMatterInteraction.h b/src/Structure/ParticleMatterInteraction.h old mode 100755 new mode 100644 diff --git a/src/Structure/PriEmissionPhysics.cpp b/src/Structure/PriEmissionPhysics.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/PriEmissionPhysics.h b/src/Structure/PriEmissionPhysics.h old mode 100755 new mode 100644 diff --git a/src/Structure/SecondaryEmissionPhysics.cpp b/src/Structure/SecondaryEmissionPhysics.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/SecondaryEmissionPhysics.h b/src/Structure/SecondaryEmissionPhysics.h old mode 100755 new mode 100644 diff --git a/src/Structure/TracerParticles.cpp b/src/Structure/TracerParticles.cpp old mode 100755 new mode 100644 diff --git a/src/Structure/TracerParticles.hpp b/src/Structure/TracerParticles.hpp old mode 100755 new mode 100644 diff --git a/src/Tables/AttList.cpp b/src/Tables/AttList.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/AttList.h b/src/Tables/AttList.h old mode 100755 new mode 100644 diff --git a/src/Tables/AttWriter.cpp b/src/Tables/AttWriter.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/AttWriter.h b/src/Tables/AttWriter.h old mode 100755 new mode 100644 diff --git a/src/Tables/CMakeLists.txt b/src/Tables/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Tables/CorrectionBase.cpp b/src/Tables/CorrectionBase.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/CorrectionBase.h b/src/Tables/CorrectionBase.h old mode 100755 new mode 100644 diff --git a/src/Tables/Eigen.cpp b/src/Tables/Eigen.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Eigen.h b/src/Tables/Eigen.h old mode 100755 new mode 100644 diff --git a/src/Tables/Envelope.cpp b/src/Tables/Envelope.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Envelope.h b/src/Tables/Envelope.h old mode 100755 new mode 100644 diff --git a/src/Tables/Flatten.h b/src/Tables/Flatten.h old mode 100755 new mode 100644 diff --git a/src/Tables/Insertion.cpp b/src/Tables/Insertion.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Insertion.h b/src/Tables/Insertion.h old mode 100755 new mode 100644 diff --git a/src/Tables/List.cpp b/src/Tables/List.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/List.h b/src/Tables/List.h old mode 100755 new mode 100644 diff --git a/src/Tables/MatrixCmd.cpp b/src/Tables/MatrixCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/MatrixCmd.h b/src/Tables/MatrixCmd.h old mode 100755 new mode 100644 diff --git a/src/Tables/Micado.cpp b/src/Tables/Micado.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Micado.h b/src/Tables/Micado.h old mode 100755 new mode 100644 diff --git a/src/Tables/Period.cpp b/src/Tables/Period.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Period.h b/src/Tables/Period.h old mode 100755 new mode 100644 diff --git a/src/Tables/RangeSelector.cpp b/src/Tables/RangeSelector.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/RangeSelector.h b/src/Tables/RangeSelector.h old mode 100755 new mode 100644 diff --git a/src/Tables/Selector.cpp b/src/Tables/Selector.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Selector.h b/src/Tables/Selector.h old mode 100755 new mode 100644 diff --git a/src/Tables/Survey.cpp b/src/Tables/Survey.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Survey.h b/src/Tables/Survey.h old mode 100755 new mode 100644 diff --git a/src/Tables/TableTester.cpp b/src/Tables/TableTester.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/TableTester.h b/src/Tables/TableTester.h old mode 100755 new mode 100644 diff --git a/src/Tables/ThreadAll.cpp b/src/Tables/ThreadAll.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/ThreadAll.h b/src/Tables/ThreadAll.h old mode 100755 new mode 100644 diff --git a/src/Tables/ThreadBpm.cpp b/src/Tables/ThreadBpm.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/ThreadBpm.h b/src/Tables/ThreadBpm.h old mode 100755 new mode 100644 diff --git a/src/Tables/Twiss.cpp b/src/Tables/Twiss.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Twiss.h b/src/Tables/Twiss.h old mode 100755 new mode 100644 diff --git a/src/Tables/Twiss3.cpp b/src/Tables/Twiss3.cpp old mode 100755 new mode 100644 diff --git a/src/Tables/Twiss3.h b/src/Tables/Twiss3.h old mode 100755 new mode 100644 diff --git a/src/Track/CMakeLists.txt b/src/Track/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Track/Track.cpp b/src/Track/Track.cpp old mode 100755 new mode 100644 diff --git a/src/Track/Track.h b/src/Track/Track.h old mode 100755 new mode 100644 diff --git a/src/Track/TrackCmd.cpp b/src/Track/TrackCmd.cpp old mode 100755 new mode 100644 diff --git a/src/Track/TrackCmd.h b/src/Track/TrackCmd.h old mode 100755 new mode 100644 diff --git a/src/Track/TrackEnd.cpp b/src/Track/TrackEnd.cpp old mode 100755 new mode 100644 diff --git a/src/Track/TrackEnd.h b/src/Track/TrackEnd.h old mode 100755 new mode 100644 diff --git a/src/Track/TrackParser.cpp b/src/Track/TrackParser.cpp old mode 100755 new mode 100644 diff --git a/src/Track/TrackParser.h b/src/Track/TrackParser.h old mode 100755 new mode 100644 diff --git a/src/Track/TrackRun.cpp b/src/Track/TrackRun.cpp old mode 100755 new mode 100644 diff --git a/src/Track/TrackRun.h b/src/Track/TrackRun.h old mode 100755 new mode 100644 diff --git a/src/Track/TrackSave.cpp b/src/Track/TrackSave.cpp old mode 100755 new mode 100644 diff --git a/src/Track/TrackSave.h b/src/Track/TrackSave.h old mode 100755 new mode 100644 diff --git a/src/Track/TrackStart.cpp b/src/Track/TrackStart.cpp old mode 100755 new mode 100644 diff --git a/src/Track/TrackStart.h b/src/Track/TrackStart.h old mode 100755 new mode 100644 diff --git a/src/Utilities/CMakeLists.txt b/src/Utilities/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/Utilities/NumToStr.h b/src/Utilities/NumToStr.h old mode 100755 new mode 100644 diff --git a/src/Utilities/OpalException.cpp b/src/Utilities/OpalException.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/OpalException.h b/src/Utilities/OpalException.h old mode 100755 new mode 100644 diff --git a/src/Utilities/OpalFilter.cpp b/src/Utilities/OpalFilter.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/OpalFilter.h b/src/Utilities/OpalFilter.h old mode 100755 new mode 100644 diff --git a/src/Utilities/OpalSection.cpp b/src/Utilities/OpalSection.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/OpalSection.h b/src/Utilities/OpalSection.h old mode 100755 new mode 100644 diff --git a/src/Utilities/RegularExpression.cpp b/src/Utilities/RegularExpression.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/RegularExpression.h b/src/Utilities/RegularExpression.h old mode 100755 new mode 100644 diff --git a/src/Utilities/Round.cpp b/src/Utilities/Round.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/Round.h b/src/Utilities/Round.h old mode 100755 new mode 100644 diff --git a/src/Utilities/Timer.cpp b/src/Utilities/Timer.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/Timer.h b/src/Utilities/Timer.h old mode 100755 new mode 100644 diff --git a/src/Utilities/TpsWerrf.cpp b/src/Utilities/TpsWerrf.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/TpsWerrf.h b/src/Utilities/TpsWerrf.h old mode 100755 new mode 100644 diff --git a/src/Utilities/Truncate.cpp b/src/Utilities/Truncate.cpp old mode 100755 new mode 100644 diff --git a/src/Utilities/Truncate.h b/src/Utilities/Truncate.h old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/BoolConstant.cpp b/src/ValueDefinitions/BoolConstant.cpp old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/BoolConstant.h b/src/ValueDefinitions/BoolConstant.h old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/CMakeLists.txt b/src/ValueDefinitions/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/RealConstant.cpp b/src/ValueDefinitions/RealConstant.cpp old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/RealConstant.h b/src/ValueDefinitions/RealConstant.h old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/RealVariable.cpp b/src/ValueDefinitions/RealVariable.cpp old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/RealVariable.h b/src/ValueDefinitions/RealVariable.h old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/RealVector.cpp b/src/ValueDefinitions/RealVector.cpp old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/RealVector.h b/src/ValueDefinitions/RealVector.h old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/StringConstant.cpp b/src/ValueDefinitions/StringConstant.cpp old mode 100755 new mode 100644 diff --git a/src/ValueDefinitions/StringConstant.h b/src/ValueDefinitions/StringConstant.h old mode 100755 new mode 100644 diff --git a/src/addToDoxygenMainPage.h b/src/addToDoxygenMainPage.h old mode 100755 new mode 100644 diff --git a/src/changes.cpp b/src/changes.cpp old mode 100755 new mode 100644 diff --git a/src/changes.h b/src/changes.h old mode 100755 new mode 100644 diff --git a/src/config.h.in b/src/config.h.in old mode 100755 new mode 100644 diff --git a/src/opal.cpp b/src/opal.cpp old mode 100755 new mode 100644 diff --git a/src/opal.h b/src/opal.h old mode 100755 new mode 100644 diff --git a/src/revision.h.in b/src/revision.h.in old mode 100755 new mode 100644 diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/Degrader-1-RT.o b/tests/Kollimator/Degrader/Degrader-1-RT.o old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/Degrader-1.in b/tests/Kollimator/Degrader/Degrader-1.in old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/Degrader-1.rt b/tests/Kollimator/Degrader/Degrader-1.rt old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/Degrader-1.sge b/tests/Kollimator/Degrader/Degrader-1.sge old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.lbal b/tests/Kollimator/Degrader/reference/Degrader-1.lbal old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.lbal.md5 b/tests/Kollimator/Degrader/reference/Degrader-1.lbal.md5 old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.out b/tests/Kollimator/Degrader/reference/Degrader-1.out old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.out.md5 b/tests/Kollimator/Degrader/reference/Degrader-1.out.md5 old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.stat b/tests/Kollimator/Degrader/reference/Degrader-1.stat old mode 100755 new mode 100644 diff --git a/tests/Kollimator/Degrader/reference/Degrader-1.stat.md5 b/tests/Kollimator/Degrader/reference/Degrader-1.stat.md5 old mode 100755 new mode 100644 diff --git a/tests/Kollimator/collimator.in b/tests/Kollimator/collimator.in old mode 100755 new mode 100644 diff --git a/tests/Main.cpp b/tests/Main.cpp old mode 100755 new mode 100644 diff --git a/tests/PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in b/tests/PROSCAN-G3-LA1-130/PROSCAN-G3-LA1-130.in old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/CMakeLists.txt b/tests/classic_src/AbsBeamline/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/DipoleFieldTest.cpp b/tests/classic_src/AbsBeamline/DipoleFieldTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/MultipoleTTest.cpp b/tests/classic_src/AbsBeamline/MultipoleTTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/OffsetTest.cpp b/tests/classic_src/AbsBeamline/OffsetTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/RingTest.cpp b/tests/classic_src/AbsBeamline/RingTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/SBend3DTest.cpp b/tests/classic_src/AbsBeamline/SBend3DTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/SBend3D_map.field b/tests/classic_src/AbsBeamline/SBend3D_map.field old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/ScalingFFAGMagnetTest.cpp b/tests/classic_src/AbsBeamline/ScalingFFAGMagnetTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/AbsBeamline/VariableRFCavityTest.cpp b/tests/classic_src/AbsBeamline/VariableRFCavityTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Algorithms/CMakeLists.txt b/tests/classic_src/Algorithms/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/classic_src/Algorithms/PolynomialTimeDependenceTest.cpp b/tests/classic_src/Algorithms/PolynomialTimeDependenceTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/CMakeLists.txt b/tests/classic_src/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/CMakeLists.txt b/tests/classic_src/Fields/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/CMakeLists.txt b/tests/classic_src/Fields/Interpolation/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/NDGridTest.cpp b/tests/classic_src/Fields/Interpolation/NDGridTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/PPSolveFactoryTest.cpp b/tests/classic_src/Fields/Interpolation/PPSolveFactoryTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/PolynomialPatchTest.cpp b/tests/classic_src/Fields/Interpolation/PolynomialPatchTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/SolveFactoryTest.cpp b/tests/classic_src/Fields/Interpolation/SolveFactoryTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/SquarePolynomialVectorTest.cpp b/tests/classic_src/Fields/Interpolation/SquarePolynomialVectorTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Fields/Interpolation/ThreeDGridTest.cpp b/tests/classic_src/Fields/Interpolation/ThreeDGridTest.cpp old mode 100755 new mode 100644 diff --git a/tests/classic_src/Utilities/CMakeLists.txt b/tests/classic_src/Utilities/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/classic_src/Utilities/RingSectionTest.cpp b/tests/classic_src/Utilities/RingSectionTest.cpp old mode 100755 new mode 100644 diff --git a/tests/ippl_src/CMakeLists.txt b/tests/ippl_src/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/ippl_src/Particle/CMakeLists.txt b/tests/ippl_src/Particle/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/ippl_src/Particle/EdgeCentering.cpp b/tests/ippl_src/Particle/EdgeCentering.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Algorithms/StatisticalErrors/CMakeLists.txt b/tests/opal_src/Algorithms/StatisticalErrors/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_src/Algorithms/StatisticalErrors/Test1.cpp b/tests/opal_src/Algorithms/StatisticalErrors/Test1.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Algorithms/StatisticalErrors/Test1.h b/tests/opal_src/Algorithms/StatisticalErrors/Test1.h old mode 100755 new mode 100644 diff --git a/tests/opal_src/BasicActions/CMakeLists.txt b/tests/opal_src/BasicActions/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_src/BasicActions/DumpEMFieldsTest.cpp b/tests/opal_src/BasicActions/DumpEMFieldsTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/BasicActions/DumpFieldsTest.cpp b/tests/opal_src/BasicActions/DumpFieldsTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/CMakeLists.txt b/tests/opal_src/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_src/Distribution/BinomialTest.cpp b/tests/opal_src/Distribution/BinomialTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Distribution/CMakeLists.txt b/tests/opal_src/Distribution/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_src/Distribution/GaussTest.cpp b/tests/opal_src/Distribution/GaussTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Elements/CMakeLists.txt b/tests/opal_src/Elements/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_src/Elements/OpalOffsetTest.cpp b/tests/opal_src/Elements/OpalOffsetTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Elements/OpalPolynomialTimeDependenceTest.cpp b/tests/opal_src/Elements/OpalPolynomialTimeDependenceTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Elements/OpalVariableRFCavityTest.cpp b/tests/opal_src/Elements/OpalVariableRFCavityTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_src/Utilities/CMakeLists.txt b/tests/opal_src/Utilities/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_src/Utilities/MockComponent.h b/tests/opal_src/Utilities/MockComponent.h old mode 100755 new mode 100644 diff --git a/tests/opal_test_utilities/CMakeLists.txt b/tests/opal_test_utilities/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tests/opal_test_utilities/SilenceTest.cpp b/tests/opal_test_utilities/SilenceTest.cpp old mode 100755 new mode 100644 diff --git a/tests/opal_test_utilities/SilenceTest.h b/tests/opal_test_utilities/SilenceTest.h old mode 100755 new mode 100644 diff --git a/tests/sc/test-1.in b/tests/sc/test-1.in old mode 100755 new mode 100644 diff --git a/tests/sc/test-2.in b/tests/sc/test-2.in old mode 100755 new mode 100644 diff --git a/tests/sc/test-3.in b/tests/sc/test-3.in old mode 100755 new mode 100644 diff --git a/tools/BandRF/Makefile.def b/tools/BandRF/Makefile.def old mode 100755 new mode 100644 diff --git a/tools/BandRF/Readme b/tools/BandRF/Readme old mode 100755 new mode 100644 diff --git a/tools/BandRF/ascii2h5block_asgic.cpp b/tools/BandRF/ascii2h5block_asgic.cpp old mode 100755 new mode 100644 diff --git a/tools/CMakeLists.txt b/tools/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tools/README b/tools/README old mode 100755 new mode 100644 diff --git a/tools/SDDS.patch b/tools/SDDS.patch old mode 100755 new mode 100644 diff --git a/tools/SDDSCMakeLists.tar.gz b/tools/SDDSCMakeLists.tar.gz old mode 100755 new mode 100644 diff --git a/tools/SDDSReader/CMakeLists.txt b/tools/SDDSReader/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tools/SDDSReader/config.h.in b/tools/SDDSReader/config.h.in old mode 100755 new mode 100644 diff --git a/tools/SDDSReader/main.cpp b/tools/SDDSReader/main.cpp old mode 100755 new mode 100644 diff --git a/tools/emacs/opal.el b/tools/emacs/opal.el old mode 100755 new mode 100644 diff --git a/tools/opal2sdds/CMakeLists.txt b/tools/opal2sdds/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tools/opal2sdds/config.h.in b/tools/opal2sdds/config.h.in old mode 100755 new mode 100644 diff --git a/tools/opal2sdds/main.cpp b/tools/opal2sdds/main.cpp old mode 100755 new mode 100644 diff --git a/tools/sdds2opal/CMakeLists.txt b/tools/sdds2opal/CMakeLists.txt old mode 100755 new mode 100644 diff --git a/tools/sdds2opal/config.h.in b/tools/sdds2opal/config.h.in old mode 100755 new mode 100644 diff --git a/tools/sdds2opal/main.cpp b/tools/sdds2opal/main.cpp old mode 100755 new mode 100644 -- GitLab