Commits · master · bliven_s / buildblocks

22 Jan, 2021 6 commits

Merge branch 'relion-openmpi-update' into 'master' · 4b2d3a5d
bliven_s authored Jan 22, 2021
```
Relion: new versions and deprecations

See merge request Pmodules/buildblocks!160
```
4b2d3a5d

Major Relion recompilation using newer openmpi · 782e89c5

bliven_s authored Jan 22, 2021

- Add relion/2.1 with openmpi/4.0.4_slurm
- Add relion/3.0.8-1 with openmpi/4.0.5_slurm
- Mark 3.1.0-1 and 3.1.1 as stable
- Deprecate all older versions (betas and versions with openmpi/3.1.4
  and older, which don't work with the current configuration)

782e89c5

Setting cuda versions to stable · c9978118

bliven_s authored Jan 22, 2021

These are pretty well tested via relion. There was a slight question
about 11.0.3 with kokkos, but it seems to be specific to that package.

c9978118

Merge branch 'openmpi4.0.5_prod' into 'master' · b912d39d
caubet_m authored Jan 22, 2021
```
Openmpi4.0.5 prod

See merge request Pmodules/buildblocks!159
```
b912d39d
OpenMPI 4.0.5 4.0.4 3.1.6 to stable · 4b67a544
Caubet Serrabou Marc authored Jan 22, 2021

4b67a544
intel/20.4 to stable · 6705712b
Caubet Serrabou Marc authored Jan 22, 2021

6705712b

17 Dec, 2020 5 commits
- Merge branch 'dynamo' into 'master' · 6754daae
  bliven_s authored Dec 17, 2020
```
Fix dynamo license in modulefile

See merge request Pmodules/buildblocks!158
```
  6754daae
- Fix dynamo license in modulefile · 94901de6
  bliven_s authored Dec 17, 2020
  
  94901de6
- Merge branch 'dynamo' into 'master' · bc1043cc
  bliven_s authored Dec 17, 2020
```
Initial dynamo/1.1.514 buildblock

See merge request Pmodules/buildblocks!157
```
  bc1043cc
- Merge branch 'cistem' into 'master' · b841630e
  bliven_s authored Dec 17, 2020
```
Add cisTEM modulefile

See merge request Pmodules/buildblocks!155
```
  b841630e
- Initial dynamo/1.1.514 buildblock · 21c3278e
  bliven_s authored Dec 17, 2020
  
  21c3278e
14 Dec, 2020 2 commits
- Merge branch 'patch-1' into 'master' · 0660ba35
  gsell authored Dec 14, 2020
```
Update build

See merge request Pmodules/buildblocks!156
```
  0660ba35
- Update build · 26fcf329
  gsell authored Dec 14, 2020
  
  26fcf329
11 Dec, 2020 2 commits
- Adding preallocated scripts · 51436c81
  bliven_s authored Dec 11, 2020
  
  51436c81
- Add cisTEM modulefile · 451d3db6
  bliven_s authored Dec 10, 2020
```
No new versions are available
```
  451d3db6
04 Dec, 2020 3 commits
- Merge branch '115-build-gnuplot-5-4-0module-for-linux' into 'master' · 7b80d1b5
  gsell authored Dec 04, 2020
```
Resolve "build gnuplot/5.4.0module for Linux"

Closes #115

See merge request Pmodules/buildblocks!154
```
  7b80d1b5
- gnuplot/5.4.0 added · 75ebaeed
  l_opal authored Dec 04, 2020
  
  75ebaeed
- gnuplot build script reviewed · ca0ffad1
  l_opal authored Dec 04, 2020
  
  ca0ffad1
03 Dec, 2020 6 commits
- Merge branch 'paraview' into 'master' · 92aa5ee3
  caubet_m authored Dec 03, 2020
```
Removed Paraview 5.8.0 (was not installed)

See merge request Pmodules/buildblocks!153
```
  92aa5ee3
- Removed Paraview 5.8.0 (was not installed) · be3d4688
  Caubet Serrabou Marc authored Dec 03, 2020
  
  be3d4688
- Merge branch 'paraview' into 'master' · c79b4801
  caubet_m authored Dec 03, 2020
```
Added Paraview automatic installation

See merge request Pmodules/buildblocks!152
```
  c79b4801
- Added Paraview automatic installation · 21210530
  Caubet Serrabou Marc authored Dec 03, 2020
  
  21210530
- Merge branch 'openmpi405_slurm_cuda' into 'master' · 810228eb
  caubet_m authored Dec 03, 2020
```
openmpi/4.0.5_slurm

See merge request Pmodules/buildblocks!151
```
  810228eb
- openmpi/4.0.5_slurm · 16a4bc7d
  Caubet Serrabou Marc authored Dec 03, 2020
  
  16a4bc7d
18 Nov, 2020 6 commits
- Merge branch 'em' into 'master' · 7974687d
  bliven_s authored Nov 18, 2020
```
New EM versions

See merge request Pmodules/buildblocks!150
```
  7974687d
- Release relion 3.1.1 · 3d0560a0
  bliven_s authored Nov 18, 2020
  
  3d0560a0
- Add Gctf buildblock · 5bdf6b29
  bliven_s authored Nov 18, 2020
```
No new versions were installed, but this documents the build process and
updates the modulefile.
```
  5bdf6b29
- Add Gautomatch buildblock · b28e9a8a
  bliven_s authored Nov 18, 2020
```
No new versions were installed, but this documents the build process and
updates the modulefile.
```
  b28e9a8a
- Add MotionCor2 1.3.1, 1.3.2, & 1.4.0 · 8014c16e
  bliven_s authored Nov 18, 2020
  
  8014c16e
- Add relion 3.1.0-1 variant · e173ae9d
  bliven_s authored Nov 11, 2020
  
  e173ae9d
16 Nov, 2020 10 commits
- Merge branch '114-mithra-use-source-from-arya' into 'master' · 7e5d91d9
  gsell authored Nov 16, 2020
```
Resolve "MITHRA use source from Arya"

Closes #114

See merge request Pmodules/buildblocks!149
```
  7e5d91d9
- MITHRA: download from Arya's repo · 2393bdae
  gsell authored Nov 16, 2020
  
  2393bdae
- Merge branch '113-mithra-new-build-block' into 'master' · 194ed07e
  gsell authored Nov 16, 2020
```
Resolve "MITHRA: new build block"

Closes #113

See merge request Pmodules/buildblocks!148
```
  194ed07e
- MITHRA: new build-block added · 18beaf08
  gsell authored Nov 16, 2020
  
  18beaf08
- Merge branch '112-uncrustify-new-build-block' into 'master' · 6ae4757a
  gsell authored Nov 16, 2020
```
Resolve "uncrustify: new build-block"

Closes #112

See merge request Pmodules/buildblocks!147
```
  6ae4757a
- uncrustify: build-block added · 50c812b1
  l_opal authored Nov 16, 2020
  
  50c812b1
- Merge branch '111-clang-write-build-block' into 'master' · 5e237b6d
  gsell authored Nov 16, 2020
```
Resolve "clang: write build-block"

Closes #111

See merge request Pmodules/buildblocks!146
```
  5e237b6d
- clang: new build-block added · 0f1b3a7d
  l_opal authored Nov 16, 2020
  
  0f1b3a7d
- Merge branch '110-amrex-18-07_3d-release-as-stable' into 'master' · 9255c37a
  gsell authored Nov 16, 2020
```
Resolve "amrex/18.07_3d: release as stable"

Closes #110

See merge request Pmodules/buildblocks!145
```
  9255c37a
- amrex/18.07_3d released as stabled · af2b9df2
  l_opal authored Nov 16, 2020
  
  af2b9df2