GitLab

Not yet in operation and some of the headerfiles need to be
cleaned up. Need to remove physics.h.

At the moment the matched distribution generator is not enabled! 

At the moment I	do not know how	to get to the parameters from the Cyclotron element
however	I add the Beamline as an argument to fix this later

Brought back saving in local frame for cyclotron tracker. Reverted the way mean E is calculated in PartBunch. Hopefully, restarts in local as well as in global frame now work in the cyclotron tracker.

- moving the following classes over from OPAL to CLASSIC
  o OpalField       -> ClassicField
  o OpalRing        -> Ring
  o OpalRingSection -> RingSection
  o LossDataSink
- clean up
- splitting Options into classic and opal options

fix proplem when running in parallel RestartTest-1 was proken. Not sure I understand 100% why I need this

This allows to specify collimator losses as an objective. CHK wrote the original part, I did 
minor modifications. I tested with BeamLine-1 from the regressiontests so far only with one core.
 

- let unit test be run from anywhere,
- clean up

- putting own header file first
  o for reason see http://www.cplusplus.com/forum/articles/10627/#msg49679 and
                   http://www.cplusplus.com/forum/articles/10627/#msg49680

- remove 'using namespace' from header files
- remove 'using std::string' and 'using std::abs' from header files

For reason see:
o http://stackoverflow.com/questions/5849457/using-namespace-in-c-headers

- updating .gitignore

For ParallelT method: If BoundaryGeometry is allocated, use it for the iterative solver in a field free region

Fixed small issue with singleParticleDump not working correctly in CyclotronTracker in RK-4 mode, made combined LF-2/RK-4 tracker default

fix problem when many sections are glued together

- improve check if sections are glued together

*) Fixed a problem with saving the lost particles if not all processors have lost particles. \n*) Consolidated Tracker_RK4 and Tracker_LF in ParallelCyclotronTracker. Enclosed in #ifdef for now. Activate by uncommenting #define GENERICTRACKER in ParallelCyclotronTracker.h. \n*) Added the general OPAL OPTION boundpdestroyfreq for Cyclotron Tracker.

Cosmetics, Typos and a bugfix in calculateBeamParameters_cycl() where the energy would always be 0 and thus the emittance inf

xpang: fixed a bug in CSRWakefunction.cpp and added CSRIGFWakefunction.cpp for the integrated green function method

Injector2 runs are terminated normally now. MPI_File_write_at function was called after MPI_FINALIZE