diff --git a/backend/app/models.py b/backend/app/models.py
index a69d99a6d7b0946168f7548458b98eadca5f095b..0ea3d80c18d0a8f7dd3efe69799dc2cbc959c04e 100644
--- a/backend/app/models.py
+++ b/backend/app/models.py
@@ -260,6 +260,14 @@ class Image(Base):
sample_id = Column(Integer, ForeignKey("samples.id"), nullable=False)
+class ExperimentParameters(Base):
+ __tablename__ = "experiment_parameters"
+ id = Column(Integer, primary_key=True, index=True, autoincrement=True)
+ run_number = Column(Integer, nullable=False)
+ beamline_parameters = Column(JSON, nullable=True)
+ sample_id = Column(Integer, ForeignKey("samples.id"), nullable=False)
+
+
# class Results(Base):
# __tablename__ = "results"
#
diff --git a/backend/app/routers/sample.py b/backend/app/routers/sample.py
index 20e034e6bf352057e95eb2846a1cb9b4a1dd7962..b52b88c5dbe7d06aba06125f5d758ff380e23a32 100644
--- a/backend/app/routers/sample.py
+++ b/backend/app/routers/sample.py
@@ -12,6 +12,8 @@ from app.schemas import (
Image,
ImageCreate,
SampleResult,
+ ExperimentParametersCreate,
+ ExperimentParametersRead,
)
from app.models import (
Puck as PuckModel,
@@ -19,6 +21,7 @@ from app.models import (
SampleEvent as SampleEventModel,
Image as ImageModel,
Dewar as DewarModel,
+ ExperimentParameters as ExperimentParametersModel,
)
from app.dependencies import get_db
import logging
@@ -192,7 +195,7 @@ async def upload_sample_image(
@router.get("/results", response_model=List[SampleResult])
async def get_sample_results(active_pgroup: str, db: Session = Depends(get_db)):
- # Query samples for the active pgroup using joins
+ # Query samples for the active pgroup using joins.
samples = (
db.query(SampleModel)
.join(SampleModel.puck)
@@ -207,8 +210,18 @@ async def get_sample_results(active_pgroup: str, db: Session = Depends(get_db)):
results = []
for sample in samples:
- # Query images associated with each sample
+ # Query images associated with the sample.
images = db.query(ImageModel).filter(ImageModel.sample_id == sample.id).all()
+
+ # Query experiment parameters (which include beamline parameters) for the
+ # sample.
+ experiment_parameters = (
+ db.query(ExperimentParametersModel)
+ .filter(ExperimentParametersModel.sample_id == sample.id)
+ .all()
+ )
+ print("Experiment Parameters for sample", sample.id, experiment_parameters)
+
results.append(
{
"sample_id": sample.id,
@@ -221,7 +234,52 @@ async def get_sample_results(active_pgroup: str, db: Session = Depends(get_db)):
{"id": img.id, "filepath": img.filepath, "comment": img.comment}
for img in images
],
+ "experiment_runs": [
+ {
+ "id": ex.id,
+ "run_number": ex.run_number,
+ "beamline_parameters": ex.beamline_parameters,
+ "sample_id": ex.sample_id,
+ }
+ for ex in experiment_parameters
+ ],
}
)
return results
+
+
+@router.post(
+ "/samples/{sample_id}/experiment_parameters",
+ response_model=ExperimentParametersRead,
+)
+def create_experiment_parameters_for_sample(
+ sample_id: int,
+ exp_params: ExperimentParametersCreate,
+ db: Session = Depends(get_db),
+):
+ # Calculate the new run_number for the given sample.
+ # This assumes that the run_number is computed as one plus the maximum
+ # current value.
+ last_exp = (
+ db.query(ExperimentParametersModel)
+ .filter(ExperimentParametersModel.sample_id == sample_id)
+ .order_by(ExperimentParametersModel.run_number.desc())
+ .first()
+ )
+ new_run_number = last_exp.run_number + 1 if last_exp else 1
+
+ # Create a new ExperimentParameters record. The beamline_parameters are
+ # stored as JSON.
+ new_exp = ExperimentParametersModel(
+ run_number=new_run_number,
+ beamline_parameters=exp_params.beamline_parameters.dict()
+ if exp_params.beamline_parameters
+ else None,
+ sample_id=sample_id,
+ )
+ db.add(new_exp)
+ db.commit()
+ db.refresh(new_exp)
+
+ return new_exp
diff --git a/backend/app/schemas.py b/backend/app/schemas.py
index c31aba6beef15b7e6ca1582df0b0e26891f1ad49..7e8c132863b318b86c8949a25becdf7a2288c1dc 100644
--- a/backend/app/schemas.py
+++ b/backend/app/schemas.py
@@ -812,9 +812,97 @@ class ImageInfo(BaseModel):
comment: Optional[str] = None
+class RotationParameters(BaseModel):
+ omegaStart_deg: float
+ omegaStep: float
+ chi: float
+ phi: float
+ numberOfImages: int
+ exposureTime_s: float
+
+
+class gridScanParamers(BaseModel):
+ xStart: float
+ xStep: float
+ yStart: float
+ yStep: float
+ zStart: float
+ zStep: float
+ numberOfImages: int
+ exposureTime_s: float
+
+
+class jetParameters(BaseModel):
+ hplc_pump_ml_min: float
+ pressure_bar: float
+ jetDiameter_um: int
+ jetSpeed_mm_s: float
+ exposureTime_s: float
+
+
+class detector(BaseModel):
+ manufacturer: str
+ model: str
+ type: str
+ serialNumber: str
+ detectorDistance_mm: float
+ beamCenterX_px: float
+ beamCenterY_px: float
+ pixelSizeX_um: float
+ pixelSizeY_um: float
+
+
+class BeamlineParameters(BaseModel):
+ synchrotron: str
+ beamline: str
+ detector: detector
+ wavelength: float
+ # energy: float
+ ringCurrent_A: float
+ ringMode: str
+ undulator: Optional[str] = None
+ undulatorgap_mm: Optional[float] = None
+ monochromator: str
+ # bandwidth_percent: float
+ transmission: float
+ focusingOptic: str
+ beamlineFluxAtSample_ph_s: Optional[float] = None
+ beamSizeWidth: Optional[float] = None
+ beamSizeHeight: Optional[float] = None
+ # dose_MGy: float
+ rotation: Optional[RotationParameters] = None
+ gridScan: Optional[gridScanParamers] = None
+ jet: Optional[jetParameters] = None
+ cryojetTemperature_K: Optional[float] = None
+ humidifierTemperature_K: Optional[float] = None
+ humidifierHumidity: Optional[float] = None
+ # experimentalHutchTemerature_K: Optional[float] = None
+ # experimentalHutchHumidity_percent: Optional[float] = None
+ # beamstopDistance_mm: Optional[float] = None
+ # beamstopDiameter_mm: Optional[float] = None
+
+
+class ExperimentParametersBase(BaseModel):
+ run_number: int
+ beamline_parameters: Optional[BeamlineParameters] = None
+ sample_id: int
+
+
+class ExperimentParametersCreate(ExperimentParametersBase):
+ run_number: Optional[int] = None
+
+
+class ExperimentParametersRead(ExperimentParametersBase):
+ id: int
+
+ class Config:
+ from_attributes = True
+
+
class SampleResult(BaseModel):
sample_id: int
sample_name: str
puck_name: Optional[str]
dewar_name: Optional[str]
images: List[ImageInfo]
+ experiment_runs: Optional[List[ExperimentParametersRead]] = []
diff --git a/backend/main.py b/backend/main.py
index c4b9484c0cf5afb2cde98d5916ebd6ece86ab484..99a65052800d95bfcbf6639dd36610d815f93954 100644
--- a/backend/main.py
+++ b/backend/main.py
@@ -139,6 +139,15 @@ def on_startup():
print(f"{environment.capitalize()} environment: Regenerating database.")
# Base.metadata.drop_all(bind=engine)
# Base.metadata.create_all(bind=engine)
+ # from sqlalchemy.engine import reflection
+ # from app.models import ExperimentParameters # adjust the import as needed
+ # inspector = reflection.Inspector.from_engine(engine)
+ # tables_exist = inspector.get_table_names()
+ #
+ # if ExperimentParameters.__tablename__ not in tables_exist:
+ # print("Creating missing table: ExperimentParameters")
+ # ExperimentParameters.__table__.create(bind=engine)
+ #
if environment == "dev":
from app.database import load_sample_data
diff --git a/frontend/package-lock.json b/frontend/package-lock.json
index 02969bd82f55e0a819f08bff4b9129a2114dac3b..0c9eb10312bd7d6fab039aef67040769ca40b7e8 100644
--- a/frontend/package-lock.json
+++ b/frontend/package-lock.json
@@ -21,7 +21,8 @@
"@mui/icons-material": "^6.1.5",
"@mui/material": "^6.1.6",
"@mui/system": "^6.1.6",
- "@mui/x-data-grid": "^7.23.3",
+ "@mui/x-data-grid-premium": "^7.27.2",
+ "@mui/x-tree-view": "^7.26.0",
"axios": "^1.7.7",
"chokidar": "^4.0.1",
"dayjs": "^1.11.13",
@@ -53,7 +54,7 @@
"openapi-typescript": "^7.4.2",
"typescript": "^5.5.3",
"typescript-eslint": "^8.7.0",
- "vite": "^5.4.8",
+ "vite": "^6.2.0",
"vite-plugin-svgr": "^4.2.0"
}
},
@@ -648,9 +649,9 @@
"license": "MIT"
},
"node_modules/@esbuild/aix-ppc64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/aix-ppc64/-/aix-ppc64-0.21.5.tgz",
- "integrity": "sha512-1SDgH6ZSPTlggy1yI6+Dbkiz8xzpHJEVAlF/AM1tHPLsf5STom9rwtjE4hKAF20FfXXNTFqEYXyJNWh1GiZedQ==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/aix-ppc64/-/aix-ppc64-0.25.0.tgz",
+ "integrity": "sha512-O7vun9Sf8DFjH2UtqK8Ku3LkquL9SZL8OLY1T5NZkA34+wG3OQF7cl4Ql8vdNzM6fzBbYfLaiRLIOZ+2FOCgBQ==",
"cpu": [
"ppc64"
],
@@ -661,13 +662,13 @@
"aix"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/android-arm": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/android-arm/-/android-arm-0.21.5.tgz",
- "integrity": "sha512-vCPvzSjpPHEi1siZdlvAlsPxXl7WbOVUBBAowWug4rJHb68Ox8KualB+1ocNvT5fjv6wpkX6o/iEpbDrf68zcg==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/android-arm/-/android-arm-0.25.0.tgz",
+ "integrity": "sha512-PTyWCYYiU0+1eJKmw21lWtC+d08JDZPQ5g+kFyxP0V+es6VPPSUhM6zk8iImp2jbV6GwjX4pap0JFbUQN65X1g==",
"cpu": [
"arm"
],
@@ -678,13 +679,13 @@
"android"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/android-arm64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/android-arm64/-/android-arm64-0.21.5.tgz",
- "integrity": "sha512-c0uX9VAUBQ7dTDCjq+wdyGLowMdtR/GoC2U5IYk/7D1H1JYC0qseD7+11iMP2mRLN9RcCMRcjC4YMclCzGwS/A==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/android-arm64/-/android-arm64-0.25.0.tgz",
+ "integrity": "sha512-grvv8WncGjDSyUBjN9yHXNt+cq0snxXbDxy5pJtzMKGmmpPxeAmAhWxXI+01lU5rwZomDgD3kJwulEnhTRUd6g==",
"cpu": [
"arm64"
],
@@ -695,13 +696,13 @@
"android"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/android-x64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/android-x64/-/android-x64-0.21.5.tgz",
- "integrity": "sha512-D7aPRUUNHRBwHxzxRvp856rjUHRFW1SdQATKXH2hqA0kAZb1hKmi02OpYRacl0TxIGz/ZmXWlbZgjwWYaCakTA==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/android-x64/-/android-x64-0.25.0.tgz",
+ "integrity": "sha512-m/ix7SfKG5buCnxasr52+LI78SQ+wgdENi9CqyCXwjVR2X4Jkz+BpC3le3AoBPYTC9NHklwngVXvbJ9/Akhrfg==",
"cpu": [
"x64"
],
@@ -712,13 +713,13 @@
"android"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/darwin-arm64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/darwin-arm64/-/darwin-arm64-0.21.5.tgz",
- "integrity": "sha512-DwqXqZyuk5AiWWf3UfLiRDJ5EDd49zg6O9wclZ7kUMv2WRFr4HKjXp/5t8JZ11QbQfUS6/cRCKGwYhtNAY88kQ==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/darwin-arm64/-/darwin-arm64-0.25.0.tgz",
+ "integrity": "sha512-mVwdUb5SRkPayVadIOI78K7aAnPamoeFR2bT5nszFUZ9P8UpK4ratOdYbZZXYSqPKMHfS1wdHCJk1P1EZpRdvw==",
"cpu": [
"arm64"
],
@@ -729,13 +730,13 @@
"darwin"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/darwin-x64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/darwin-x64/-/darwin-x64-0.21.5.tgz",
- "integrity": "sha512-se/JjF8NlmKVG4kNIuyWMV/22ZaerB+qaSi5MdrXtd6R08kvs2qCN4C09miupktDitvh8jRFflwGFBQcxZRjbw==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/darwin-x64/-/darwin-x64-0.25.0.tgz",
+ "integrity": "sha512-DgDaYsPWFTS4S3nWpFcMn/33ZZwAAeAFKNHNa1QN0rI4pUjgqf0f7ONmXf6d22tqTY+H9FNdgeaAa+YIFUn2Rg==",
"cpu": [
"x64"
],
@@ -746,13 +747,13 @@
"darwin"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/freebsd-arm64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/freebsd-arm64/-/freebsd-arm64-0.21.5.tgz",
- "integrity": "sha512-5JcRxxRDUJLX8JXp/wcBCy3pENnCgBR9bN6JsY4OmhfUtIHe3ZW0mawA7+RDAcMLrMIZaf03NlQiX9DGyB8h4g==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/freebsd-arm64/-/freebsd-arm64-0.25.0.tgz",
+ "integrity": "sha512-VN4ocxy6dxefN1MepBx/iD1dH5K8qNtNe227I0mnTRjry8tj5MRk4zprLEdG8WPyAPb93/e4pSgi1SoHdgOa4w==",
"cpu": [
"arm64"
],
@@ -763,13 +764,13 @@
"freebsd"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/freebsd-x64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/freebsd-x64/-/freebsd-x64-0.21.5.tgz",
- "integrity": "sha512-J95kNBj1zkbMXtHVH29bBriQygMXqoVQOQYA+ISs0/2l3T9/kj42ow2mpqerRBxDJnmkUDCaQT/dfNXWX/ZZCQ==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/freebsd-x64/-/freebsd-x64-0.25.0.tgz",
+ "integrity": "sha512-mrSgt7lCh07FY+hDD1TxiTyIHyttn6vnjesnPoVDNmDfOmggTLXRv8Id5fNZey1gl/V2dyVK1VXXqVsQIiAk+A==",
"cpu": [
"x64"
],
@@ -780,13 +781,13 @@
"freebsd"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-arm": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-arm/-/linux-arm-0.21.5.tgz",
- "integrity": "sha512-bPb5AHZtbeNGjCKVZ9UGqGwo8EUu4cLq68E95A53KlxAPRmUyYv2D6F0uUI65XisGOL1hBP5mTronbgo+0bFcA==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-arm/-/linux-arm-0.25.0.tgz",
+ "integrity": "sha512-vkB3IYj2IDo3g9xX7HqhPYxVkNQe8qTK55fraQyTzTX/fxaDtXiEnavv9geOsonh2Fd2RMB+i5cbhu2zMNWJwg==",
"cpu": [
"arm"
],
@@ -797,13 +798,13 @@
"linux"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-arm64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-arm64/-/linux-arm64-0.21.5.tgz",
- "integrity": "sha512-ibKvmyYzKsBeX8d8I7MH/TMfWDXBF3db4qM6sy+7re0YXya+K1cem3on9XgdT2EQGMu4hQyZhan7TeQ8XkGp4Q==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-arm64/-/linux-arm64-0.25.0.tgz",
+ "integrity": "sha512-9QAQjTWNDM/Vk2bgBl17yWuZxZNQIF0OUUuPZRKoDtqF2k4EtYbpyiG5/Dk7nqeK6kIJWPYldkOcBqjXjrUlmg==",
"cpu": [
"arm64"
],
@@ -814,13 +815,13 @@
"linux"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-ia32": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-ia32/-/linux-ia32-0.21.5.tgz",
- "integrity": "sha512-YvjXDqLRqPDl2dvRODYmmhz4rPeVKYvppfGYKSNGdyZkA01046pLWyRKKI3ax8fbJoK5QbxblURkwK/MWY18Tg==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-ia32/-/linux-ia32-0.25.0.tgz",
+ "integrity": "sha512-43ET5bHbphBegyeqLb7I1eYn2P/JYGNmzzdidq/w0T8E2SsYL1U6un2NFROFRg1JZLTzdCoRomg8Rvf9M6W6Gg==",
"cpu": [
"ia32"
],
@@ -831,13 +832,13 @@
"linux"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-loong64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-loong64/-/linux-loong64-0.21.5.tgz",
- "integrity": "sha512-uHf1BmMG8qEvzdrzAqg2SIG/02+4/DHB6a9Kbya0XDvwDEKCoC8ZRWI5JJvNdUjtciBGFQ5PuBlpEOXQj+JQSg==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-loong64/-/linux-loong64-0.25.0.tgz",
+ "integrity": "sha512-fC95c/xyNFueMhClxJmeRIj2yrSMdDfmqJnyOY4ZqsALkDrrKJfIg5NTMSzVBr5YW1jf+l7/cndBfP3MSDpoHw==",
"cpu": [
"loong64"
],
@@ -848,13 +849,13 @@
"linux"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-mips64el": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-mips64el/-/linux-mips64el-0.21.5.tgz",
- "integrity": "sha512-IajOmO+KJK23bj52dFSNCMsz1QP1DqM6cwLUv3W1QwyxkyIWecfafnI555fvSGqEKwjMXVLokcV5ygHW5b3Jbg==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-mips64el/-/linux-mips64el-0.25.0.tgz",
+ "integrity": "sha512-nkAMFju7KDW73T1DdH7glcyIptm95a7Le8irTQNO/qtkoyypZAnjchQgooFUDQhNAy4iu08N79W4T4pMBwhPwQ==",
"cpu": [
"mips64el"
],
@@ -865,13 +866,13 @@
"linux"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-ppc64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-ppc64/-/linux-ppc64-0.21.5.tgz",
- "integrity": "sha512-1hHV/Z4OEfMwpLO8rp7CvlhBDnjsC3CttJXIhBi+5Aj5r+MBvy4egg7wCbe//hSsT+RvDAG7s81tAvpL2XAE4w==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-ppc64/-/linux-ppc64-0.25.0.tgz",
+ "integrity": "sha512-NhyOejdhRGS8Iwv+KKR2zTq2PpysF9XqY+Zk77vQHqNbo/PwZCzB5/h7VGuREZm1fixhs4Q/qWRSi5zmAiO4Fw==",
"cpu": [
"ppc64"
],
@@ -882,13 +883,13 @@
"linux"
],
"engines": {
- "node": ">=12"
+ "node": ">=18"
}
},
"node_modules/@esbuild/linux-riscv64": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/@esbuild/linux-riscv64/-/linux-riscv64-0.21.5.tgz",
- "integrity": "sha512-2HdXDMd9GMgTGrPWnJzP2ALSokE/0O5HhTUvWIbD3YdjME8JwvSCnNGBnTThKGEB91OZhzrJ4qIIxk/SBmyDDA==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/@esbuild/linux-riscv64/-/linux-riscv64-0.25.0.tgz",
+ "integrity": "sha512-5S/rbP5OY+GHLC5qXp1y/Mx//e92L1YDqkiBbO9TQOvuFXM+iDqUNG5XopAnXoRH3FjIUDkeGcY1cgNvnXp/kA==",
"cpu": [
"riscv64"
],
@@ -899,13 +900,13 @@
"linux"
],
"engines": {
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+ "node_modules/@mui/x-data-grid/node_modules/@mui/x-internals": {
+ "version": "7.26.0",
+ "resolved": "https://registry.npmjs.org/@mui/x-internals/-/x-internals-7.26.0.tgz",
+ "integrity": "sha512-VxTCYQcZ02d3190pdvys2TDg9pgbvewAVakEopiOgReKAUhLdRlgGJHcOA/eAuGLyK1YIo26A6Ow6ZKlSRLwMg==",
+ "license": "MIT",
+ "dependencies": {
+ "@babel/runtime": "^7.25.7",
+ "@mui/utils": "^5.16.6 || ^6.0.0"
+ },
+ "engines": {
+ "node": ">=14.0.0"
+ },
+ "funding": {
+ "type": "opencollective",
+ "url": "https://opencollective.com/mui-org"
+ },
+ "peerDependencies": {
+ "react": "^17.0.0 || ^18.0.0 || ^19.0.0"
+ }
+ },
"node_modules/@mui/x-date-pickers": {
"version": "7.23.6",
"resolved": "https://registry.npmjs.org/@mui/x-date-pickers/-/x-date-pickers-7.23.6.tgz",
@@ -1747,6 +1917,102 @@
"resolved": "https://registry.npmjs.org/@mui/x-internals/-/x-internals-7.23.6.tgz",
"integrity": "sha512-hT1Pa4PNCnxwiauPbYMC3p4DiEF1x05Iu4C1MtC/jMJ1LtthymLmTuQ6ZQ53/R9FeqK6sYd6A6noR+vNMjp5DA==",
"license": "MIT",
+ "peer": true,
+ "dependencies": {
+ "@babel/runtime": "^7.25.7",
+ "@mui/utils": "^5.16.6 || ^6.0.0"
+ },
+ "engines": {
+ "node": ">=14.0.0"
+ },
+ "funding": {
+ "type": "opencollective",
+ "url": "https://opencollective.com/mui-org"
+ },
+ "peerDependencies": {
+ "react": "^17.0.0 || ^18.0.0 || ^19.0.0"
+ }
+ },
+ "node_modules/@mui/x-license": {
+ "version": "7.26.0",
+ "resolved": "https://registry.npmjs.org/@mui/x-license/-/x-license-7.26.0.tgz",
+ "integrity": "sha512-WxwBGk6xXF0vi4IGCCojMHjQsAXvltjP+YgFTTgWVFhIpDFDu89xLOwRnSWrhCwD6dlK/BwKgn2UgxTE8BZGFQ==",
+ "license": "SEE LICENSE IN LICENSE",
+ "dependencies": {
+ "@babel/runtime": "^7.25.7",
+ "@mui/utils": "^5.16.6 || ^6.0.0",
+ "@mui/x-internals": "7.26.0"
+ },
+ "engines": {
+ "node": ">=14.0.0"
+ },
+ "peerDependencies": {
+ "react": "^17.0.0 || ^18.0.0 || ^19.0.0"
+ }
+ },
+ "node_modules/@mui/x-license/node_modules/@mui/x-internals": {
+ "version": "7.26.0",
+ "resolved": "https://registry.npmjs.org/@mui/x-internals/-/x-internals-7.26.0.tgz",
+ "integrity": "sha512-VxTCYQcZ02d3190pdvys2TDg9pgbvewAVakEopiOgReKAUhLdRlgGJHcOA/eAuGLyK1YIo26A6Ow6ZKlSRLwMg==",
+ "license": "MIT",
+ "dependencies": {
+ "@babel/runtime": "^7.25.7",
+ "@mui/utils": "^5.16.6 || ^6.0.0"
+ },
+ "engines": {
+ "node": ">=14.0.0"
+ },
+ "funding": {
+ "type": "opencollective",
+ "url": "https://opencollective.com/mui-org"
+ },
+ "peerDependencies": {
+ "react": "^17.0.0 || ^18.0.0 || ^19.0.0"
+ }
+ },
+ "node_modules/@mui/x-tree-view": {
+ "version": "7.26.0",
+ "resolved": "https://registry.npmjs.org/@mui/x-tree-view/-/x-tree-view-7.26.0.tgz",
+ "integrity": "sha512-adZwVj6/edNowi2RIeyGPTcfdP4EXtMGo0mk2LQogG8m8bZkZRjOQoQ7pkBF0UPMaIAwzCadq2OWj3MPH4DP5A==",
+ "license": "MIT",
+ "dependencies": {
+ "@babel/runtime": "^7.25.7",
+ "@mui/utils": "^5.16.6 || ^6.0.0",
+ "@mui/x-internals": "7.26.0",
+ "@types/react-transition-group": "^4.4.11",
+ "clsx": "^2.1.1",
+ "prop-types": "^15.8.1",
+ "react-transition-group": "^4.4.5"
+ },
+ "engines": {
+ "node": ">=14.0.0"
+ },
+ "funding": {
+ "type": "opencollective",
+ "url": "https://opencollective.com/mui-org"
+ },
+ "peerDependencies": {
+ "@emotion/react": "^11.9.0",
+ "@emotion/styled": "^11.8.1",
+ "@mui/material": "^5.15.14 || ^6.0.0",
+ "@mui/system": "^5.15.14 || ^6.0.0",
+ "react": "^17.0.0 || ^18.0.0 || ^19.0.0",
+ "react-dom": "^17.0.0 || ^18.0.0 || ^19.0.0"
+ },
+ "peerDependenciesMeta": {
+ "@emotion/react": {
+ "optional": true
+ },
+ "@emotion/styled": {
+ "optional": true
+ }
+ }
+ },
+ "node_modules/@mui/x-tree-view/node_modules/@mui/x-internals": {
+ "version": "7.26.0",
+ "resolved": "https://registry.npmjs.org/@mui/x-internals/-/x-internals-7.26.0.tgz",
+ "integrity": "sha512-VxTCYQcZ02d3190pdvys2TDg9pgbvewAVakEopiOgReKAUhLdRlgGJHcOA/eAuGLyK1YIo26A6Ow6ZKlSRLwMg==",
+ "license": "MIT",
"dependencies": {
"@babel/runtime": "^7.25.7",
"@mui/utils": "^5.16.6 || ^6.0.0"
@@ -2524,6 +2790,12 @@
"dev": true,
"license": "MIT"
},
+ "node_modules/@types/format-util": {
+ "version": "1.0.4",
+ "resolved": "https://registry.npmjs.org/@types/format-util/-/format-util-1.0.4.tgz",
+ "integrity": "sha512-xrCYOdHh5zA3LUrn6CvspYwlzSWxPso11Lx32WnAG6KvLCRecKZ/Rh21PLXUkzUFsQmrGcx/traJAFjR6dVS5Q==",
+ "license": "MIT"
+ },
"node_modules/@types/json-schema": {
"version": "7.0.15",
"resolved": "https://registry.npmjs.org/@types/json-schema/-/json-schema-7.0.15.tgz",
@@ -3441,6 +3713,15 @@
"node": ">=10"
}
},
+ "node_modules/cosmiconfig/node_modules/yaml": {
+ "version": "1.10.2",
+ "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz",
+ "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==",
+ "license": "ISC",
+ "engines": {
+ "node": ">= 6"
+ }
+ },
"node_modules/crc-32": {
"version": "1.2.2",
"resolved": "https://registry.npmjs.org/crc-32/-/crc-32-1.2.2.tgz",
@@ -3712,9 +3993,9 @@
}
},
"node_modules/esbuild": {
- "version": "0.21.5",
- "resolved": "https://registry.npmjs.org/esbuild/-/esbuild-0.21.5.tgz",
- "integrity": "sha512-mg3OPMV4hXywwpoDxu3Qda5xCKQi+vCTZq8S9J/EpkhB2HzKXq4SNFZE3+NK93JYxc8VMSep+lOUSC/RVKaBqw==",
+ "version": "0.25.0",
+ "resolved": "https://registry.npmjs.org/esbuild/-/esbuild-0.25.0.tgz",
+ "integrity": "sha512-BXq5mqc8ltbaN34cDqWuYKyNhX8D/Z0J1xdtdQ8UcIIIyJyz+ZMKUt58tF3SrZ85jcfN/PZYhjR5uDQAYNVbuw==",
"dev": true,
"hasInstallScript": true,
"license": "MIT",
@@ -3722,32 +4003,34 @@
"esbuild": "bin/esbuild"
},
"engines": {
- "node": ">=12"
+ "node": ">=18"
},
"optionalDependencies": {
- "@esbuild/aix-ppc64": "0.21.5",
- "@esbuild/android-arm": "0.21.5",
- "@esbuild/android-arm64": "0.21.5",
- "@esbuild/android-x64": "0.21.5",
- "@esbuild/darwin-arm64": "0.21.5",
- "@esbuild/darwin-x64": "0.21.5",
- "@esbuild/freebsd-arm64": "0.21.5",
- "@esbuild/freebsd-x64": "0.21.5",
- "@esbuild/linux-arm": "0.21.5",
- "@esbuild/linux-arm64": "0.21.5",
- "@esbuild/linux-ia32": "0.21.5",
- "@esbuild/linux-loong64": "0.21.5",
- "@esbuild/linux-mips64el": "0.21.5",
- "@esbuild/linux-ppc64": "0.21.5",
- "@esbuild/linux-riscv64": "0.21.5",
- "@esbuild/linux-s390x": "0.21.5",
- "@esbuild/linux-x64": "0.21.5",
- "@esbuild/netbsd-x64": "0.21.5",
- "@esbuild/openbsd-x64": "0.21.5",
- "@esbuild/sunos-x64": "0.21.5",
- "@esbuild/win32-arm64": "0.21.5",
- "@esbuild/win32-ia32": "0.21.5",
- "@esbuild/win32-x64": "0.21.5"
+ "@esbuild/aix-ppc64": "0.25.0",
+ "@esbuild/android-arm": "0.25.0",
+ "@esbuild/android-arm64": "0.25.0",
+ "@esbuild/android-x64": "0.25.0",
+ "@esbuild/darwin-arm64": "0.25.0",
+ "@esbuild/darwin-x64": "0.25.0",
+ "@esbuild/freebsd-arm64": "0.25.0",
+ "@esbuild/freebsd-x64": "0.25.0",
+ "@esbuild/linux-arm": "0.25.0",
+ "@esbuild/linux-arm64": "0.25.0",
+ "@esbuild/linux-ia32": "0.25.0",
+ "@esbuild/linux-loong64": "0.25.0",
+ "@esbuild/linux-mips64el": "0.25.0",
+ "@esbuild/linux-ppc64": "0.25.0",
+ "@esbuild/linux-riscv64": "0.25.0",
+ "@esbuild/linux-s390x": "0.25.0",
+ "@esbuild/linux-x64": "0.25.0",
+ "@esbuild/netbsd-arm64": "0.25.0",
+ "@esbuild/netbsd-x64": "0.25.0",
+ "@esbuild/openbsd-arm64": "0.25.0",
+ "@esbuild/openbsd-x64": "0.25.0",
+ "@esbuild/sunos-x64": "0.25.0",
+ "@esbuild/win32-arm64": "0.25.0",
+ "@esbuild/win32-ia32": "0.25.0",
+ "@esbuild/win32-x64": "0.25.0"
}
},
"node_modules/escalade": {
@@ -5478,9 +5761,9 @@
}
},
"node_modules/postcss": {
- "version": "8.5.1",
- "resolved": "https://registry.npmjs.org/postcss/-/postcss-8.5.1.tgz",
- "integrity": "sha512-6oz2beyjc5VMn/KV1pPw8fliQkhBXrVn1Z3TVyqZxU8kZpzEKhBdmCFqI6ZbmGtamQvQGuU1sgPTk8ZrXDD7jQ==",
+ "version": "8.5.3",
+ "resolved": "https://registry.npmjs.org/postcss/-/postcss-8.5.3.tgz",
+ "integrity": "sha512-dle9A3yYxlBSrt8Fu+IpjGT8SY8hN0mlaA6GY8t0P5PjIOZemULz/E2Bnm/2dcUOena75OTNkHI76uZBNUUq3A==",
"dev": true,
"funding": [
{
@@ -6678,6 +6961,15 @@
"dev": true,
"license": "MIT"
},
+ "node_modules/use-sync-external-store": {
+ "version": "1.4.0",
+ "resolved": "https://registry.npmjs.org/use-sync-external-store/-/use-sync-external-store-1.4.0.tgz",
+ "integrity": "sha512-9WXSPC5fMv61vaupRkCKCxsPxBocVnwakBEkMIHHpkTTg6icbJtg6jzgtLDm4bl3cSHAca52rYWih0k4K3PfHw==",
+ "license": "MIT",
+ "peerDependencies": {
+ "react": "^16.8.0 || ^17.0.0 || ^18.0.0 || ^19.0.0"
+ }
+ },
"node_modules/util": {
"version": "0.10.4",
"resolved": "https://registry.npmjs.org/util/-/util-0.10.4.tgz",
@@ -6709,21 +7001,21 @@
}
},
"node_modules/vite": {
- "version": "5.4.11",
- "resolved": "https://registry.npmjs.org/vite/-/vite-5.4.11.tgz",
- "integrity": "sha512-c7jFQRklXua0mTzneGW9QVyxFjUgwcihC4bXEtujIo2ouWCe1Ajt/amn2PCxYnhYfd5k09JX3SB7OYWFKYqj8Q==",
+ "version": "6.2.0",
+ "resolved": "https://registry.npmjs.org/vite/-/vite-6.2.0.tgz",
+ "integrity": "sha512-7dPxoo+WsT/64rDcwoOjk76XHj+TqNTIvHKcuMQ1k4/SeHDaQt5GFAeLYzrimZrMpn/O6DtdI03WUjdxuPM0oQ==",
"dev": true,
"license": "MIT",
"dependencies": {
- "esbuild": "^0.21.3",
- "postcss": "^8.4.43",
- "rollup": "^4.20.0"
+ "esbuild": "^0.25.0",
+ "postcss": "^8.5.3",
+ "rollup": "^4.30.1"
},
"bin": {
"vite": "bin/vite.js"
},
"engines": {
- "node": "^18.0.0 || >=20.0.0"
+ "node": "^18.0.0 || ^20.0.0 || >=22.0.0"
},
"funding": {
"url": "https://github.com/vitejs/vite?sponsor=1"
@@ -6732,19 +7024,25 @@
"fsevents": "~2.3.3"
},
"peerDependencies": {
- "@types/node": "^18.0.0 || >=20.0.0",
+ "@types/node": "^18.0.0 || ^20.0.0 || >=22.0.0",
+ "jiti": ">=1.21.0",
"less": "*",
"lightningcss": "^1.21.0",
"sass": "*",
"sass-embedded": "*",
"stylus": "*",
"sugarss": "*",
- "terser": "^5.4.0"
+ "terser": "^5.16.0",
+ "tsx": "^4.8.1",
+ "yaml": "^2.4.2"
},
"peerDependenciesMeta": {
"@types/node": {
"optional": true
},
+ "jiti": {
+ "optional": true
+ },
"less": {
"optional": true
},
@@ -6765,6 +7063,12 @@
},
"terser": {
"optional": true
+ },
+ "tsx": {
+ "optional": true
+ },
+ "yaml": {
+ "optional": true
}
}
},
@@ -6948,12 +7252,18 @@
"license": "ISC"
},
"node_modules/yaml": {
- "version": "1.10.2",
- "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz",
- "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==",
+ "version": "2.7.0",
+ "resolved": "https://registry.npmjs.org/yaml/-/yaml-2.7.0.tgz",
+ "integrity": "sha512-+hSoy/QHluxmC9kCIJyL/uyFmLmc+e5CFR5Wa+bpIhIj85LVb9ZH2nVnqrHoSvKogwODv0ClqZkmiSSaIH5LTA==",
+ "dev": true,
"license": "ISC",
+ "optional": true,
+ "peer": true,
+ "bin": {
+ "yaml": "bin.mjs"
+ },
"engines": {
- "node": ">= 6"
+ "node": ">= 14"
}
},
"node_modules/yaml-ast-parser": {
diff --git a/frontend/package.json b/frontend/package.json
index 140f8c3467539cee13364e64ee1b07b00f5bedfa..ac47655471d4027d17e515d6a48b708824082d4a 100644
--- a/frontend/package.json
+++ b/frontend/package.json
@@ -27,7 +27,8 @@
"@mui/icons-material": "^6.1.5",
"@mui/material": "^6.1.6",
"@mui/system": "^6.1.6",
- "@mui/x-data-grid": "^7.23.3",
+ "@mui/x-data-grid-premium": "^7.27.2",
+ "@mui/x-tree-view": "^7.26.0",
"axios": "^1.7.7",
"chokidar": "^4.0.1",
"dayjs": "^1.11.13",
@@ -59,7 +60,7 @@
"openapi-typescript": "^7.4.2",
"typescript": "^5.5.3",
"typescript-eslint": "^8.7.0",
- "vite": "^5.4.8",
+ "vite": "^6.2.0",
"vite-plugin-svgr": "^4.2.0"
}
}
diff --git a/frontend/src/components/ResultGrid.tsx b/frontend/src/components/ResultGrid.tsx
index 586b3ea5173a0c5050d8201f9972c027da868d5c..9ede4e43371c5debf95a502866121056a858f644 100644
--- a/frontend/src/components/ResultGrid.tsx
+++ b/frontend/src/components/ResultGrid.tsx
@@ -1,30 +1,131 @@
-// TypeScript (ResultGrid.tsx snippet)
import React, { useEffect, useState } from 'react';
-import { DataGrid, GridColDef } from '@mui/x-data-grid';
+import { DataGridPremium, GridColDef } from '@mui/x-data-grid-premium';
+import IconButton from '@mui/material/IconButton';
+import InfoIcon from '@mui/icons-material/Info';
import { OpenAPI, SamplesService } from '../../openapi';
import './SampleImage.css';
-
+// Extend your image info interface if needed.
interface ImageInfo {
id: number;
filepath: string;
comment?: string;
}
+// This represents an experiment run as returned by your API.
+interface ExperimentParameters {
+ id: number;
+ run_number: number;
+ sample_id: number;
+ beamline_parameters: {
+ beamSizeHeight: number;
+ beamSizeWidth: number;
+ beamline: string;
+ beamlineFluxAtSample_ph_s: number;
+ cryojetTemperature_K?: number | null;
+ detector: {
+ beamCenterX_px: number;
+ beamCenterY_px: number;
+ detectorDistance_mm: number;
+ manufacturer: string;
+ model: string;
+ pixelSizeX_um: number;
+ pixelSizeY_um: number;
+ serialNumber: string;
+ type: string;
+ };
+ rotation?: {
+ chi: number;
+ exposureTime_s: number;
+ numberOfImages: number | null;
+ omegaStart_deg: number;
+ omegaStep: number;
+ phi: number;
+ } | null;
+ gridScan?: {
+ xStart: number;
+ xStep: number;
+ yStart: number;
+ yStep: number;
+ zStart: number;
+ zStep: number;
+ numberOfImages: number;
+ exposureTime_s: number;
+ } | null;
+ focusingOptic?: string;
+ humidifierHumidity?: number | null;
+ humidifierTemperature_K?: number | null;
+ jet?: any;
+ monochromator?: string;
+ ringCurrent_A?: number;
+ ringMode?: string;
+ synchrotron?: string;
+ transmission?: number;
+ undulator?: any;
+ undulatorgap_mm?: any;
+ wavelength?: number;
+ };
+}
+
+// Represents a sample returned by the API.
interface SampleResult {
sample_id: number;
sample_name: string;
puck_name?: string;
dewar_name?: string;
images: ImageInfo[];
+ experiment_runs?: ExperimentParameters[];
+}
+
+// A flat tree row type for the grid.
+interface TreeRow {
+ id: string;
+ hierarchy: (string | number)[];
+ type: 'sample' | 'run';
+ sample_id: number;
+ sample_name?: string;
+ puck_name?: string;
+ dewar_name?: string;
+ images?: ImageInfo[];
+ run_number?: number;
+ beamline_parameters?: ExperimentParameters['beamline_parameters'];
+ experimentType?: string;
+ numberOfImages?: number;
}
interface ResultGridProps {
activePgroup: string;
}
+// Helper function to safely get the number of images.
+const getNumberOfImages = (run: ExperimentParameters): number => {
+ const params = run.beamline_parameters;
+ if (params.rotation && params.rotation.numberOfImages != null) {
+ return params.rotation.numberOfImages;
+ } else if (params.gridScan && params.gridScan.numberOfImages != null) {
+ return params.gridScan.numberOfImages;
+ }
+ return 0;
+};
+
+// Helper function to determine the experiment type.
+const getExperimentType = (run: ExperimentParameters): string => {
+ const params = run.beamline_parameters;
+ if (params.rotation && params.rotation.numberOfImages != null && params.rotation.omegaStep != null) {
+ const numImages = params.rotation.numberOfImages;
+ const omegaStep = params.rotation.omegaStep;
+ if ([1, 2, 4].includes(numImages) && omegaStep === 90) {
+ return "Characterization";
+ }
+ return "Rotation";
+ } else if (params.gridScan) {
+ return "Grid Scan";
+ }
+ return "Rotation";
+};
+
const ResultGrid: React.FC<ResultGridProps> = ({ activePgroup }) => {
- const [rows, setRows] = useState<SampleResult[]>([]);
+ const [rows, setRows] = useState<TreeRow[]>([]);
const [basePath, setBasePath] = useState('');
useEffect(() => {
@@ -44,99 +145,124 @@ const ResultGrid: React.FC<ResultGridProps> = ({ activePgroup }) => {
console.log('Environment Mode:', mode);
console.log('Resolved OpenAPI.BASE:', OpenAPI.BASE);
- // Update the base path for images
setBasePath(`${OpenAPI.BASE}/`);
}, []);
useEffect(() => {
- const fetchData = () => {
- console.log("Fetching sample results for active_pgroup:", activePgroup);
- SamplesService.getSampleResultsSamplesResultsGet(activePgroup)
- .then((response: SampleResult[]) => {
- console.log("Response received:", response);
- setRows(response);
- })
- .catch((err: Error) => {
- console.error("Error fetching sample results:", err);
- });
- };
+ console.log('Fetching sample results for active_pgroup:', activePgroup);
+ SamplesService.getSampleResultsSamplesResultsGet(activePgroup)
+ .then((response: SampleResult[]) => {
+ console.log('Response received:', response);
+ const treeRows: TreeRow[] = [];
- // Fetch data initially.
- fetchData();
+ response.forEach((sample) => {
+ // Add the sample row.
+ const sampleRow: TreeRow = {
+ id: `sample-${sample.sample_id}`,
+ hierarchy: [sample.sample_id],
+ type: 'sample',
+ sample_id: sample.sample_id,
+ sample_name: sample.sample_name,
+ puck_name: sample.puck_name,
+ dewar_name: sample.dewar_name,
+ images: sample.images,
+ };
+ treeRows.push(sampleRow);
- // Set up an interval to refresh data every 15 seconds (adjust as needed)
- const intervalId = setInterval(fetchData, 15000);
+ // Add experiment run rows.
+ if (sample.experiment_runs) {
+ sample.experiment_runs.forEach((run) => {
+ const experimentType = getExperimentType(run);
+ const numImages = getNumberOfImages(run);
+ const runRow: TreeRow = {
+ id: `run-${sample.sample_id}-${run.run_number}`,
+ hierarchy: [sample.sample_id, run.run_number],
+ type: 'run',
+ sample_id: sample.sample_id,
+ run_number: run.run_number,
+ beamline_parameters: run.beamline_parameters,
+ experimentType,
+ numberOfImages: numImages,
+ images: sample.images,
+ };
+ treeRows.push(runRow);
+ });
+ }
+ });
- // Clean up when component unmounts or activePgroup changes.
- return () => clearInterval(intervalId);
+ setRows(treeRows);
+ })
+ .catch((error) => {
+ console.error('Error fetching sample results:', error);
+ });
}, [activePgroup]);
-
+ // Define the grid columns, including the new processing results column.
const columns: GridColDef[] = [
- { field: 'sample_id', headerName: 'ID', width: 70 },
- { field: 'sample_name', headerName: 'Sample Name', width: 150 },
- { field: 'puck_name', headerName: 'Puck Name', width: 150 },
- { field: 'dewar_name', headerName: 'Dewar Name', width: 150 },
{
- field: 'images',
- headerName: 'Images',
- width: 300,
+ field: 'sample_name',
+ headerName: 'Sample Name',
+ width: 200,
+ renderCell: (params) => (params.row.type === 'sample' ? params.value : null),
+ },
+ {
+ field: 'puck_name',
+ headerName: 'Puck Name',
+ width: 150,
+ renderCell: (params) => (params.row.type === 'sample' ? params.value : null),
+ },
+ {
+ field: 'dewar_name',
+ headerName: 'Dewar Name',
+ width: 150,
+ renderCell: (params) => (params.row.type === 'sample' ? params.value : null),
+ },
+ {
+ field: 'experimentType',
+ headerName: 'Experiment Type',
+ width: 150,
+ renderCell: (params) => (params.row.type === 'run' ? params.value : null),
+ },
+ {
+ field: 'numberOfImages',
+ headerName: 'Number of Images',
+ width: 150,
+ renderCell: (params) => (params.row.type === 'run' ? params.value : null),
+ },
+ {
+ field: 'processingResults',
+ headerName: 'Processing Results',
+ width: 180,
renderCell: (params) => {
- const imageList: ImageInfo[] = params.value;
- if (!imageList || imageList.length === 0) {
- return null;
+ if (params.row.type === 'run') {
+ return (
+ <IconButton
+ aria-label="processing results placeholder"
+ onClick={() => {
+ // Placeholder for processing results details.
+ console.log('Clicked processing details for run', params.row.run_number);
+ }}
+ >
+ <InfoIcon />
+ </IconButton>
+ );
}
-
- // Filter the images to include only the two bb_raster images
- const filteredImages = imageList.filter(
- (img) =>
- img.filepath.includes("bb_raster_0") ||
- img.filepath.includes("bb_raster_90")
- );
-
- if (filteredImages.length === 0) {
- return null;
- }
-
- return (
- <div style={{ display: 'flex', alignItems: 'center' }}>
- {filteredImages.map((img) => {
- const url = basePath + img.filepath;
- return (
- <img
- key={img.id}
- src={url}
- alt={img.comment || 'sample'}
- className="zoom-image"
- style={{
- width: 40,
- height: 40,
- marginRight: 5,
- borderRadius: 4,
- }}
- />
- );
- })}
- </div>
- );
+ return null;
},
},
-
];
return (
- <DataGrid
- rows={rows}
- columns={columns}
- pageSize={10}
- getRowId={(row) => row.sample_id}
- sx={{
- '& .MuiDataGrid-cell': {
- overflow: 'visible',
- },
- }}
- />
-
+ <div style={{ height: 600, width: '100%' }}>
+ <DataGridPremium
+ rows={rows}
+ columns={columns}
+ treeData
+ getTreeDataPath={(row: TreeRow) => row.hierarchy}
+ defaultGroupingExpansionDepth={-1}
+ getRowId={(row) => row.id}
+ />
+ </div>
);
};
diff --git a/frontend/src/components/RunDetails.tsx b/frontend/src/components/RunDetails.tsx
new file mode 100644
index 0000000000000000000000000000000000000000..60003f3b5d4140e5cdc4524962b03d6def1a6bb2
--- /dev/null
+++ b/frontend/src/components/RunDetails.tsx
@@ -0,0 +1,84 @@
+import {SimpleTreeView, TreeItem} from "@mui/x-tree-view";
+import React from "react";
+
+
+interface ExperimentParameters {
+ id: number;
+ run_number: number;
+ beamline_parameters: {
+ synchrotron: string;
+ beamline: string;
+ detector: {
+ manufacturer: string;
+ model: string;
+ type: string;
+ serial_number: string;
+ detector_distance_mm: number;
+ beam_center_x_px: number;
+ beam_center_y_px: number;
+ pixel_size_x_um: number;
+ pixel_size_y_um: number;
+ number_of_images: number;
+ exposure_time_s: number;
+ };
+ // Add additional fields if needed.
+ };
+}
+
+<SimpleTreeView
+ defaultCollapseIcon="â–¾"
+ defaultExpandIcon="â–¸"
+ sx={{ fontSize: '0.875rem' }}
+>
+ <TreeItem nodeId="detector-group" label={<strong>Detector Details</strong>}>
+ <TreeItem nodeId="detector-group" label={<strong>Detector Details</strong>}>
+ <TreeItem
+ nodeId="detector-manufacturer"
+ label={`Manufacturer: ${detector?.manufacturer || 'N/A'}`}
+ />
+ <TreeItem
+ nodeId="detector-model"
+ label={`Model: ${detector?.model || 'N/A'}`}
+ />
+ <TreeItem
+ nodeId="detector-type"
+ label={`Type: ${detector?.type || 'N/A'}`}
+ />
+ <TreeItem
+ nodeId="detector-serial"
+ label={`Serial Number: ${detector?.serial_number || 'N/A'}`}
+ />
+ <TreeItem
+ nodeId="detector-distance"
+ label={`Distance (mm): ${detector?.detector_distance_mm ?? 'N/A'}`}
+ />
+ <TreeItem
+ nodeId="beam-center"
+ label={
+ detector
+ ? `Beam Center: x:${detector.beam_center_x_px}, y:${detector.beam_center_y_px}`
+ : 'Beam Center: N/A'
+ }
+ />
+ <TreeItem
+ nodeId="pixel-size"
+ label={
+ detector
+ ? `Pixel Size (µm): x:${detector.pixel_size_x_um}, y:${detector.pixel_size_y_um}`
+ : 'Pixel Size: N/A'
+ }
+ />
+ <TreeItem
+ nodeId="img-count"
+ label={`Number of Images: ${detector?.number_of_images ?? 'N/A'}`}
+ />
+ <TreeItem
+ nodeId="exposure-time"
+ label={`Exposure Time (s): ${detector?.exposure_time_s ?? 'N/A'}`}
+ />
+ </TreeItem>
+
+
+
+ </TreeItem>
+</SimpleTreeView>
\ No newline at end of file
diff --git a/frontend/src/components/SampleTracker.tsx b/frontend/src/components/SampleTracker.tsx
index c10442a34e0741d493726a1e6c9fab202dbaec20..cfafd182e86fc8e4a6229058a1310b3fe016e1c6 100644
--- a/frontend/src/components/SampleTracker.tsx
+++ b/frontend/src/components/SampleTracker.tsx
@@ -52,7 +52,7 @@ const SampleTracker: React.FC<SampleTrackerProps> = ({ activePgroup }) => {
fetchPucks();
const interval = setInterval(() => {
fetchPucks();
- }, 1000);
+ }, 100000);
return () => clearInterval(interval);
}, [activePgroup]);
diff --git a/pyproject.toml b/pyproject.toml
index 3e87e4dace6ac9f18840f71270679ea8a5bcd3ad..a22f5fe7ccc96767fad3198a6f68b79d0ecba595 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
[project]
name = "aareDB"
-version = "0.1.0a23"
+version = "0.1.0a24"
description = "Backend for next gen sample management system"
authors = [{name = "Guillaume Gotthard", email = "guillaume.gotthard@psi.ch"}]
license = {text = "MIT"}
diff --git a/testfunctions.ipynb b/testfunctions.ipynb
index fdc21e59b3f52b6e2667d363022a2b91b5e6ea6d..091b5efc3338d82e93a8042d80e48c048155d262 100644
--- a/testfunctions.ipynb
+++ b/testfunctions.ipynb
@@ -3,8 +3,8 @@
{
"metadata": {
"ExecuteTime": {
- "end_time": "2025-02-26T13:09:58.719218Z",
- "start_time": "2025-02-26T13:09:58.716771Z"
+ "end_time": "2025-03-04T09:22:38.371102Z",
+ "start_time": "2025-03-04T09:22:37.939673Z"
}
},
"cell_type": "code",
@@ -41,12 +41,12 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "0.1.0a21\n",
+ "0.1.0a24\n",
"https://127.0.0.1:8000\n"
]
}
],
- "execution_count": 86
+ "execution_count": 1
},
{
"metadata": {},
@@ -57,7 +57,7 @@
"## Fetch all Shipments, list corresponding dewars and pucks\n",
"\n",
"from datetime import date, datetime\n",
- "from aareDBclient import ShipmentsApi\n",
+ "from aareDBclient import ShipmentsApi, SamplesApi, GridScanParamers\n",
"from aareDBclient.models import Shipment\n",
"\n",
"with aareDBclient.ApiClient(configuration) as api_client:\n",
@@ -176,8 +176,8 @@
{
"metadata": {
"ExecuteTime": {
- "end_time": "2025-02-26T12:04:05.046079Z",
- "start_time": "2025-02-26T12:04:04.954761Z"
+ "end_time": "2025-03-03T10:06:33.111482Z",
+ "start_time": "2025-03-03T10:06:33.082367Z"
}
},
"cell_type": "code",
@@ -206,13 +206,13 @@
"text": [
"The response of PucksApi->get_pucks_by_slot_pucks_slot_slot_identifier_get:\n",
"\n",
- "[PuckWithTellPosition(id=1, puck_name='PUCK-001', puck_type='Unipuck', puck_location_in_dewar=1, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
- " PuckWithTellPosition(id=2, puck_name='PUCK002', puck_type='Unipuck', puck_location_in_dewar=2, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
- " PuckWithTellPosition(id=3, puck_name='PUCK003', puck_type='Unipuck', puck_location_in_dewar=3, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
- " PuckWithTellPosition(id=4, puck_name='PUCK004', puck_type='Unipuck', puck_location_in_dewar=4, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
- " PuckWithTellPosition(id=5, puck_name='PUCK005', puck_type='Unipuck', puck_location_in_dewar=5, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
- " PuckWithTellPosition(id=6, puck_name='PUCK006', puck_type='Unipuck', puck_location_in_dewar=6, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None),\n",
- " PuckWithTellPosition(id=7, puck_name='PUCK007', puck_type='Unipuck', puck_location_in_dewar=7, dewar_id=1, dewar_name='Dewar One', pgroup='p20001, p20002', samples=None, tell_position=None)]\n"
+ "[PuckWithTellPosition(id=1, puck_name='PUCK-001', puck_type='Unipuck', puck_location_in_dewar=1, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='A2'),\n",
+ " PuckWithTellPosition(id=2, puck_name='PUCK002', puck_type='Unipuck', puck_location_in_dewar=2, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='A1'),\n",
+ " PuckWithTellPosition(id=3, puck_name='PUCK003', puck_type='Unipuck', puck_location_in_dewar=3, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='F2'),\n",
+ " PuckWithTellPosition(id=4, puck_name='PUCK004', puck_type='Unipuck', puck_location_in_dewar=4, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position=None),\n",
+ " PuckWithTellPosition(id=5, puck_name='PUCK005', puck_type='Unipuck', puck_location_in_dewar=5, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position=None),\n",
+ " PuckWithTellPosition(id=6, puck_name='PUCK006', puck_type='Unipuck', puck_location_in_dewar=6, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position='F1'),\n",
+ " PuckWithTellPosition(id=7, puck_name='PUCK007', puck_type='Unipuck', puck_location_in_dewar=7, dewar_id=1, dewar_name='Dewar One', pgroup='p20001', samples=None, tell_position=None)]\n"
]
},
{
@@ -224,7 +224,7 @@
]
}
],
- "execution_count": 77
+ "execution_count": 2
},
{
"metadata": {
@@ -328,8 +328,8 @@
{
"metadata": {
"ExecuteTime": {
- "end_time": "2025-02-26T12:04:41.352140Z",
- "start_time": "2025-02-26T12:04:41.331320Z"
+ "end_time": "2025-03-03T10:06:39.979358Z",
+ "start_time": "2025-03-03T10:06:39.957359Z"
}
},
"cell_type": "code",
@@ -408,7 +408,7 @@
" Sample ID: 13, Sample Name: Sample013, Position: 13, Mount count: 0\n",
" Sample ID: 14, Sample Name: Sample014, Position: 14, Mount count: 1\n",
" Sample ID: 15, Sample Name: Sample015, Position: 15, Mount count: 0\n",
- " Sample ID: 16, Sample Name: Sample016, Position: 16, Mount count: 0\n"
+ " Sample ID: 16, Sample Name: Sample016, Position: 16, Mount count: 1\n"
]
},
{
@@ -420,7 +420,7 @@
]
}
],
- "execution_count": 79
+ "execution_count": 3
},
{
"metadata": {
@@ -534,6 +534,8 @@
},
"cell_type": "code",
"source": [
+ "# post images to sample database\n",
+ "\n",
"import os\n",
"import mimetypes\n",
"import requests\n",
@@ -602,6 +604,958 @@
"execution_count": null,
"source": "help(api_instance.upload_sample_images_samples_samples_sample_id_upload_images_post)",
"id": "cb1b99e6327fff84"
+ },
+ {
+ "metadata": {
+ "ExecuteTime": {
+ "end_time": "2025-03-04T09:17:34.613556Z",
+ "start_time": "2025-03-04T09:17:34.599367Z"
+ }
+ },
+ "cell_type": "code",
+ "source": [
+ "# post experiment results to sample database\n",
+ "\n",
+ "from aareDBclient.models import (\n",
+ " ExperimentParametersCreate,\n",
+ " RotationParameters,\n",
+ " BeamlineParameters,\n",
+ " GridScanParamers\n",
+ ")\n",
+ "\n",
+ "\n",
+ "## Build the nested parameters\n",
+ "#rotation = RotationParameters(\n",
+ "# omegaStart_deg=0.0,\n",
+ "# omegaStep=90.0,\n",
+ "# phi=10.0,\n",
+ "# chi=0.0,\n",
+ "# numberOfImages=4,\n",
+ "# exposureTime_s=0.02\n",
+ "#)\n",
+ "\n",
+ "gridscan = GridScanParamers(\n",
+ " xStart=0.0,\n",
+ " xStep=0.1,\n",
+ " yStart=0.0,\n",
+ " yStep= 0.1,\n",
+ " zStart=0.0,\n",
+ " zStep=0.0,\n",
+ " numberOfImages=4600,\n",
+ " exposureTime_s=0.001\n",
+ ")\n",
+ "\n",
+ "# If your client code requires you to build a detector model,\n",
+ "# you can either use a Detector model or pass a dictionary.\n",
+ "# Here we pass a dictionary.\n",
+ "detector_data = {\n",
+ " \"manufacturer\": \"DECTRIS\",\n",
+ " \"model\": \"PILATUS4 2M\",\n",
+ " \"type\": \"photon-counting\",\n",
+ " \"serialNumber\": \"16684dscsd668468\",\n",
+ " \"detectorDistance_mm\": 95.0,\n",
+ " \"beamCenterX_px\": 512.0,\n",
+ " \"beamCenterY_px\": 512.0,\n",
+ " \"pixelSizeX_um\": 150.0,\n",
+ " \"pixelSizeY_um\": 150.0,\n",
+ "}\n",
+ "\n",
+ "beamline_params = BeamlineParameters(\n",
+ " synchrotron=\"Swiss Light Source\",\n",
+ " beamline=\"PXIII\",\n",
+ " detector=detector_data,\n",
+ " wavelength=1.0,\n",
+ " ringCurrent_A=0.0,\n",
+ " ringMode=\"Machine Down\",\n",
+ " monochromator=\"Si111\",\n",
+ " transmission=1.00,\n",
+ " focusingOptic=\"Kirkpatrick-Baez\",\n",
+ " beamlineFluxAtSample_ph_s=0,\n",
+ " beamSizeWidth=30.0,\n",
+ " beamSizeHeight=30.0,\n",
+ "# rotation=rotation # Optional nested parameter\n",
+ " gridScan=gridscan\n",
+ " # gridScan and jet are optional and can be added similarly\n",
+ ")\n",
+ "\n",
+ "# Prepare the experiment parameters payload.\n",
+ "# Note that the run_number will be set on the server side, so you can leave\n",
+ "# it out or set it to a dummy value if your client model requires it.\n",
+ "experiment_params_payload = ExperimentParametersCreate(\n",
+ " # run_number can be omitted/ignored if computed on the server\n",
+ " beamline_parameters=beamline_params,\n",
+ " sample_id=15 # change sample_id to an existing sample in your database\n",
+ ")\n",
+ "\n",
+ "# Now, use the API instance to send the POST request\n",
+ "with aareDBclient.ApiClient(configuration) as api_client:\n",
+ " api_instance = aareDBclient.SamplesApi(api_client)\n",
+ "\n",
+ " try:\n",
+ " # Call the endpoint. The endpoint path expects the sample_id.\n",
+ " api_response = api_instance.create_experiment_parameters_for_sample_samples_samples_sample_id_experiment_parameters_post(\n",
+ " sample_id=experiment_params_payload.sample_id,\n",
+ " experiment_parameters_create=experiment_params_payload\n",
+ ")\n",
+ "\n",
+ " print(\"API Response:\")\n",
+ " print(api_response)\n",
+ " except ApiException as e:\n",
+ " print(\"Exception when calling ExperimentParametersApi->create_experiment_parameters_for_sample:\")\n",
+ " print(e)\n"
+ ],
+ "id": "421ba0710f29a5fa",
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "API Response:\n",
+ "run_number=3 beamline_parameters=BeamlineParameters(synchrotron='Swiss Light Source', beamline='PXIII', detector=Detector(manufacturer='DECTRIS', model='PILATUS4 2M', type='photon-counting', serial_number='16684dscsd668468', detector_distance_mm=95.0, beam_center_x_px=512.0, beam_center_y_px=512.0, pixel_size_x_um=150.0, pixel_size_y_um=150.0), wavelength=1.0, ring_current_a=0.0, ring_mode='Machine Down', undulator=None, undulatorgap_mm=None, monochromator='Si111', transmission=1.0, focusing_optic='Kirkpatrick-Baez', beamline_flux_at_sample_ph_s=0.0, beam_size_width=30.0, beam_size_height=30.0, rotation=None, grid_scan=GridScanParamers(x_start=0.0, x_step=0.1, y_start=0.0, y_step=0.1, z_start=0.0, z_step=0.0, number_of_images=4600, exposure_time_s=0.001), jet=None, cryojet_temperature_k=None, humidifier_temperature_k=None, humidifier_humidity=None) sample_id=15 id=10\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
+ " warnings.warn(\n"
+ ]
+ }
+ ],
+ "execution_count": 12
+ },
+ {
+ "metadata": {
+ "ExecuteTime": {
+ "end_time": "2025-03-04T09:22:51.456656Z",
+ "start_time": "2025-03-04T09:22:51.403762Z"
+ }
+ },
+ "cell_type": "code",
+ "source": [
+ "# get experiment results to sample database\n",
+ "\n",
+ "with aareDBclient.ApiClient(configuration) as api_client:\n",
+ " # Create an instance of the API class\n",
+ " api_instance = aareDBclient.SamplesApi(api_client)\n",
+ "\n",
+ " # GET request: Fetch all pucks in the tell\n",
+ " try:\n",
+ " # Call the API method to fetch pucks\n",
+ " all_results_response = api_instance.get_sample_results_samples_results_get(active_pgroup=\"p20001\")\n",
+ "\n",
+ " # Debug response structure by printing it in JSON format\n",
+ " formatted_response = json.dumps(\n",
+ " [p.to_dict() for p in all_results_response], # Assuming the API response can be converted to dicts\n",
+ " indent=4 # Use indentation for readability\n",
+ " )\n",
+ " print(\"The response of PucksApi->get_all_pucks_in_tell (formatted):\\n\")\n",
+ " print(formatted_response)\n",
+ "\n",
+ " ## Iterate through each puck and print information\n",
+ " #for p in all_results_response:\n",
+ " # print(f\"Puck ID: {p.id}, Puck Name: {p.puck_name}\")\n",
+ " #\n",
+ " # ## Check if the puck has any samples\n",
+ " # if hasattr(p, 'samples') and p.samples: # Ensure 'samples' attribute exists and is not empty\n",
+ " # for sample in p.samples:\n",
+ " # print(f\" Sample ID: {sample.id}, Sample Name: {sample.sample_name}, Position: {sample.position}, Mount count: {sample.mount_count}\")\n",
+ " # else:\n",
+ " # print(\" No samples found in this puck.\")\n",
+ " #\n",
+ " except ApiException as e:\n",
+ " print(\"Exception when calling PucksApi->get_all_pucks_in_tell: %s\\n\" % e)"
+ ],
+ "id": "6079a4f10102e906",
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "The response of PucksApi->get_all_pucks_in_tell (formatted):\n",
+ "\n",
+ "[\n",
+ " {\n",
+ " \"sample_id\": 1,\n",
+ " \"sample_name\": \"Sample001\",\n",
+ " \"puck_name\": \"PUCK-001\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 2,\n",
+ " \"sample_name\": \"Sample002\",\n",
+ " \"puck_name\": \"PUCK-001\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 3,\n",
+ " \"sample_name\": \"Sample003\",\n",
+ " \"puck_name\": \"PUCK-001\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 4,\n",
+ " \"sample_name\": \"Sample004\",\n",
+ " \"puck_name\": \"PUCK-001\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
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+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 44,\n",
+ " \"sample_name\": \"Sample044\",\n",
+ " \"puck_name\": \"PUCK006\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 45,\n",
+ " \"sample_name\": \"Sample045\",\n",
+ " \"puck_name\": \"PUCK006\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 46,\n",
+ " \"sample_name\": \"Sample046\",\n",
+ " \"puck_name\": \"PUCK006\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 47,\n",
+ " \"sample_name\": \"Sample047\",\n",
+ " \"puck_name\": \"PUCK006\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 48,\n",
+ " \"sample_name\": \"Sample048\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 49,\n",
+ " \"sample_name\": \"Sample049\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 50,\n",
+ " \"sample_name\": \"Sample050\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 51,\n",
+ " \"sample_name\": \"Sample051\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 52,\n",
+ " \"sample_name\": \"Sample052\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 53,\n",
+ " \"sample_name\": \"Sample053\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 54,\n",
+ " \"sample_name\": \"Sample054\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 55,\n",
+ " \"sample_name\": \"Sample055\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 56,\n",
+ " \"sample_name\": \"Sample056\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 57,\n",
+ " \"sample_name\": \"Sample057\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 58,\n",
+ " \"sample_name\": \"Sample058\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 59,\n",
+ " \"sample_name\": \"Sample059\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 60,\n",
+ " \"sample_name\": \"Sample060\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " },\n",
+ " {\n",
+ " \"sample_id\": 61,\n",
+ " \"sample_name\": \"Sample061\",\n",
+ " \"puck_name\": \"PUCK007\",\n",
+ " \"dewar_name\": \"Dewar One\",\n",
+ " \"images\": [],\n",
+ " \"experiment_runs\": []\n",
+ " }\n",
+ "]\n"
+ ]
+ },
+ {
+ "name": "stderr",
+ "output_type": "stream",
+ "text": [
+ "/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/urllib3/connectionpool.py:1097: InsecureRequestWarning: Unverified HTTPS request is being made to host '127.0.0.1'. Adding certificate verification is strongly advised. See: https://urllib3.readthedocs.io/en/latest/advanced-usage.html#tls-warnings\n",
+ " warnings.warn(\n"
+ ]
+ }
+ ],
+ "execution_count": 2
}
],
"metadata": {