Commit 909ab5d1 authored by root's avatar root
Browse files

first accelerated electrons measured with linux and bokeh

parent e6665fe3
{
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"source": [
"from ipywidgets import interact\n",
"import numpy as np\n",
"\n",
"from bokeh.io import push_notebook\n",
"from bokeh.plotting import figure, show, output_notebook\n"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {
"collapsed": true
},
"outputs": [],
"source": [
"x = np.linspace(0, 2*np.pi, 2000)\n",
"y = np.sin(x)"
]
},
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"cell_type": "code",
"execution_count": 3,
"metadata": {
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" <span id=\"1804ae8d-a266-42ee-a726-3a3da164c98e\">Loading BokehJS ...</span>\n",
" </div>"
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" function run_callbacks() {\n",
" window._bokeh_onload_callbacks.forEach(function(callback) { callback() });\n",
" delete window._bokeh_onload_callbacks\n",
" console.info(\"Bokeh: all callbacks have finished\");\n",
" }\n",
"\n",
" function load_libs(js_urls, callback) {\n",
" window._bokeh_onload_callbacks.push(callback);\n",
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" console.log(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
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" console.log(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
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" window._bokeh_is_loading--;\n",
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" console.log(\"Bokeh: all BokehJS libraries loaded\");\n",
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" };\n",
" s.onerror = function() {\n",
" console.warn(\"failed to load library \" + url);\n",
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" }\n",
" };\n",
"\n",
" var js_urls = ['https://cdn.pydata.org/bokeh/release/bokeh-0.11.1.min.js', 'https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.11.1.min.js', 'https://cdn.pydata.org/bokeh/release/bokeh-compiler-0.11.1.min.js'];\n",
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" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-0.11.1.min.css\");\n",
" console.log(\"Bokeh: injecting CSS: https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.11.1.min.css\");\n",
" Bokeh.embed.inject_css(\"https://cdn.pydata.org/bokeh/release/bokeh-widgets-0.11.1.min.css\");\n",
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"output_notebook()"
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{
"data": {
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"<bokeh.models.renderers.GlyphRenderer at 0x102df7550>"
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"metadata": {},
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],
"source": [
"p = figure(title=\"simple line example\", plot_height=300, plot_width=600, y_range=(-5,5))\n",
"p.line(x, y, color=\"#2222aa\", line_width=3)"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {
"collapsed": true
},
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"source": [
"def update(range_max=6):\n",
" p.x_range.end = range_max\n",
" push_notebook()"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {
"collapsed": false
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"outputs": [
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......@@ -65,15 +65,15 @@ class DRS4:
def getTriggerMode(self):
return caget('FIN-LSCP-DRS1:TRIG_MODE')
def trigger(self):
self.socket.sendto('drsstart\n'.encode(), ('wd017.psi.ch', 3000))
#def trigger(self):
# self.socket.sendto('drsstart\n'.encode(), ('wd017.psi.ch', 3000))
def measure(self):
import time
time.sleep(self.delay)
self.trigger()
import datetime
time = str(datetime.datetime.now()).replace(':','-').replace(' ','_')
measurement = {'time': time}
return measurement
#def measure(self):
# import time
# time.sleep(self.delay)
# self.trigger()
# import datetime
# time = str(datetime.datetime.now()).replace(':','-').replace(' ','_')
# measurement = {'time': time}
# return measurement
\ No newline at end of file
import numpy as np
import matplotlib.pyplot as plt
from Devices.PeriscopeTools.PyAPT import APTMotor
import sys
sys.path.append('../pyAPT/')
from pyAPT import Z806
'''
config file:
......@@ -14,7 +17,7 @@ measurement file (n.a)
class ParabolicMirror:
def __init__(self, config, home = False):
import time
time.sleep(1)
time.sleep(0.1)
try:
self.connect_motors()
print ('Connnection with motors sucessful!')
......@@ -29,55 +32,59 @@ class ParabolicMirror:
def set_config(self,config):
self.Pay.mAbs(config['pos_Pay'])
self.Paz.mAbs(config['pos_Paz'])
self.Pay.goto(config['pos_Pay'])
self.Paz.goto(config['pos_Paz'])
def get_config(self):
config = {}
config['pos_Pay'] = float(self.Pay.getPos())
config['pos_Paz'] = float(self.Paz.getPos())
config['pos_Pay'] = float(self.Pay.position())
config['pos_Paz'] = float(self.Paz.position())
return config
def connect_motors(self):
self.Paz = APTMotor(27001714, HWTYPE=31)
self.Pay = APTMotor(27250866, HWTYPE=31)
self.Paz = Z806(83835804)
self.Pay = Z806(83835879)
self.motors = [self.Pay, self.Paz]
def home(self):
for motor in self.motors:
motor.go_home()
motor.home()
def optimize(self, focus, laser, per, wanted_focus_um, n_av = 10, sleep_time = 0.2, output = True, maxiter = 100):
def optimize(self, focus, laser, Cz, wanted_focus_um, n_av = 10, sleep_time = 0.2, output = True, maxiter = 100):
#this variable is necessary to compensate the attenuation of the laser
global intmult
intmult = 1.
global reduce_int
reduce_int = False
def to_min():
global intmult
FWHMxs = []
FWHMys = []
maxits = []
maxints = []
for i in range(n_av):
measurement = focus.measure()
FWHMxs.append(measurement['FWHMx'])
FWHMys.append(measurement['FWHMy'])
maxits.append(measurement['maxit'])
maxints.append(measurement['maxit'])
if output:
focus.plot_measure(measurement)
plt.pause(0.01)
#if output:
# focus.plot_measure(measurement)
# plt.pause(0.01)
del measurement
if output:
print ('FWHMxs: ',FWHMxs)
print ('maxits: ',maxits)
print ('maxints: ',maxints)
res = np.sqrt(np.array(FWHMxs)**2 + np.array(FWHMys)**2)/np.sqrt(2)*4096/np.array(maxits)*intmult
res = np.sqrt(np.array(FWHMxs)**2 + np.array(FWHMys)**2)/np.sqrt(2)*4096/np.array(maxints)*intmult
mean, error = np.mean(res), np.std(res, ddof = -1)
if mean > 4e3:
config_laser = laser.get_config()
config_laser['attenuation'] = config_laser['attenuation']/1.4
laser.set_config(config_laser)
intmult *= 1.4
if np.mean(maxints) > 4e3:
redurce_int = True
if output:
print ('mean: ',mean,'error: ', error)
......@@ -87,6 +94,9 @@ class ParabolicMirror:
return
return mean, error
def change_parameter(y, z, zc):
print ('Parameters: ',(y, z, zc))
......@@ -94,10 +104,11 @@ class ParabolicMirror:
self.set_config(config)
config_per = per.get_config()
#config_per = per.get_config()
config_per['deltaz_Cz'] = zc
per.set_config(config_per)
#config_per['deltaz_Cz'] = zc
Cz.goto(zc)
#per.set_config(config_per)
return True
def opt_f(x):
......@@ -115,17 +126,31 @@ class ParabolicMirror:
return to_min()[0]
config0 = self.get_config()
config_per0 = per.get_config()
#config_per0 = per.get_config()
config0_focus = focus.get_config()
config0_focus['measure_full']=True
focus.set_config(config0_focus)
x0 = [config0['pos_Pay'],
config0['pos_Paz'],
config_per0['deltaz_Cz']]
Cz.position()]
#config_per0['deltaz_Cz']]
def after_it(res):
print ('###################')
print ('step done')
global reduce_int
if reduce_int:
config_laser = laser.get_config()
config_laser['attenuation'] = config_laser['attenuation']/1.2
laser.set_config(config_laser)
intmult *= 1.2
reduce_int = False
print ('laser attenuated')
# directly Nedler-Mead
import scipy.optimize
res = scipy.optimize.minimize(opt_f, x0, method='Nelder-Mead', options={'disp': output,
res = scipy.optimize.minimize(opt_f, x0, method='Nelder-Mead',callback = after_it, options={'disp': output,
'initial_simplex': None,
'maxiter': maxiter,
'xatol': 0.00005,
......
......@@ -107,15 +107,31 @@ class Periscope:
self.zmin = max((max((self.deltaz_Mz, self.deltaz_Cz)), 0))