Merge branch '44-replace-tabs-with-spaces-in-attributes-more-links-to-fix' into 'master'

Resolve "replace TABs with spaces in *.attributes, more links to fix"

Closes #44

See merge request OPAL/documentation/manual!99

Manual.attributes

-:OPAL_version:				2.5
+:OPAL_version:                          2.5
 
-:branch_OPAL:				master
-:branch_manual:			    master
-:branch_reg_tests:			master
+:branch_OPAL:                           master
+:branch_manual:                         master
+:branch_reg_tests:                      master
 
+:host_git:                              https://gitlab.psi.ch
+:host_amas:                             http://amas.web.psi.ch
 
-:host_git:				https://gitlab.psi.ch
-:host_amas:				http://amas.web.psi.ch
+:link_manual:                           {host_git}/OPAL/documentation/manual
+:link_manual_src:                       {link_manual}/blob/{branch_manual}
 
-:link_manual:				{host_git}/OPAL/documentation/manual
-:link_manual_src:			{link_manual}/blob/{branch_manual}
-:baseurl:				{link_manual}/blob/{branch_manual}
+:link_OPAL:                             {host_git}/OPAL/src
+:link_OPAL_wiki:                        {link_OPAL}/wikis
 
-:link_OPAL_doc:				{host_amas}/opal/Documentation/{branch_OPAL}
+:link_pyOPALTools:                      {host_git}/OPAL/pyOPALTools
+:link_pyOPALTools_wiki:                 {link_pyOPALTools}/wikis
+:link_PSI_Ring:                         {host_git}/AMAS-BDModels/PSI-Ring
+:link_RRI2_0038Y1:                      {link_PSI_Ring}/blob/master/RawData/RRI2-0038Y17.peaks[file].
 
-:link_OPAL:				{host_git}/OPAL/src
-:link_OPAL_wiki:			{link_OPAL}/wikis
+:link_opt_pilot:                        {host_git}/OPAL/opt-pilot/
+:link_opt_pilot_wiki:                   {link_opt_pilot}/wikis
 
-:link_pyOPALTools:			{host_git}/OPAL/pyOPALTools
-:link_pyOPALTools_wiki:			{link_pyOPALTools}/wikis
-:link_PSI_Ring:				{host_git}/AMAS-BDModels/PSI-Ring
-:link_RRI2_0038Y1:			{link_PSI_Ring}/blob/master/RawData/RRI2-0038Y17.peaks[file].
+:link_H5hut:                            {host_git}/H5hut/src
+:link_H5hut_wiki:                       {link_H5hut}/wikis/home
 
-:link_opt_pilot:			{host_git}/OPAL/opt-pilot/
-:link_opt_pilot_wiki:			{link_opt_pilot}/wikis
+:link_doxygen_doc:                      {host_amas}/opal/CodeDocumentation/{branch_OPAL}
 
-:link_H5hut:				{host_git}/H5hut/src
-:link_H5hut_wiki:			{link_H5hut}/wikis/home
+:link_ipac2017:                         http://accelconf.web.cern.ch/AccelConf/ipac2017
+:link_ipac2017_thpab077:                {link_ipac2017}/papers/thpab077.pdf
 
-:link_doxygen_doc:			{host_amas}/docs/opal/master-doxygen/html
-
-:link_ipac2017:				http://accelconf.web.cern.ch/AccelConf/ipac2017
-:link_ipac2017_thpab077:			{link_ipac2017}/papers/thpab077.pdf
-
-:link_reg_tests:			{host_git}/OPAL/regression-tests
-:link_reg_tests_src:			{link_reg_tests}/blob/{branch_reg_tests}/RegressionTests
-:link_regtest_MAP_FODO:			{link_reg_tests_src}/MAP-FODO
-:link_regtest_LaserEmission_1: 		{link_reg_tests_src}/LaserEmission-1
-:link_regtest_RingCyclotronMatched: 	{link_reg_tests_src}/RingCyclotronMatched
+:link_reg_tests:                        {host_git}/OPAL/regression-tests
+:link_reg_tests_src:                    {link_reg_tests}/blob/{branch_reg_tests}/RegressionTests
+:link_regtest_MAP_FODO:                 {link_reg_tests_src}/MAP-FODO
+:link_regtest_LaserEmission_1:          {link_reg_tests_src}/LaserEmission-1
+:link_regtest_RingCyclotronMatched:     {link_reg_tests_src}/RingCyclotronMatched
 

control.asciidoc

@@ -560,10 +560,10 @@ The `SYSTEM` command can also be used to execute an external script.
 
 Below is an example that generates a random seed with python.
 The python script
-{link_OPAL_doc}/examples/gen_seed.py[gen_seed.py]
+{link_manual_src}/examples/gen_seed.py[gen_seed.py]
 is called with the `SYSTEM` command.
 This scripts writes the seed to a file
-{link_OPAL_doc}/examples/gen_seed.opal[gen_seed.opal]
+{link_manual_src}/examples/gen_seed.opal[gen_seed.opal]
 that can be read with the `CALL` command.
 
 ----

opalcycl.asciidoc

@@ -602,7 +602,7 @@ mrad.
 A bash script _tuning.sh_ is shown on the next page, to execute
 _OPAL-cycl_ for tune calculations.
 
-{link_OPAL_doc}/examples/tuning.sh[tuning.sh]
+{link_manual_src}/examples/tuning.sh[tuning.sh]
 
 To start execution, just run
 _tuning.sh_ which uses the input file _testcycl.in_ and the auxiliary

partmatter.asciidoc

@@ -394,7 +394,7 @@ track it as in a drift and put it back to the main bunch when finishing
 [[sec.partmatter.example-of-an-input-file]]
 === Example of an Input File
 
-{link_OPAL_doc}/examples/particlematterinteraction.in[particlematterinteraction.in]
+{link_manual_src}/examples/particlematterinteraction.in[particlematterinteraction.in]
 
 FX5 is a slit in x direction, the `APERTURE` is *POSITIVE*, the first
 value in `APERTURE` is the left part, the second value is the right

tutorial.asciidoc

@@ -149,16 +149,16 @@ two single-gap flat-top cavities.
 Following is an input file of *Single Particle Tracking mode* for PSI
 Injector II cyclotron.
 
-{link_OPAL_doc}/examples/Injector2.in[Injector2.in]
+{link_manual_src}/examples/Injector2.in[Injector2.in]
 
 The supplementary files should be placed in the same directory.
 
-* {link_OPAL_doc}/examples/Fieldmaps/Cav1.dat[Cav1.dat]
-* {link_OPAL_doc}/examples/Fieldmaps/Cav3.dat[Cav3.dat]
-* {link_OPAL_doc}/examples/Fieldmaps/ZYKL9Z.NAR[ZYKL9Z.NAR]
-* {link_OPAL_doc}/examples/Distribution/scdist.opal[scdist.opal]
-* {link_OPAL_doc}/examples/Distribution/spdist.opal[spdist.opal]
-* {link_OPAL_doc}/examples/Distribution/tdist.opal[tdist.opal]
+* {link_manual_src}/examples/Fieldmaps/Cav1.dat[Cav1.dat]
+* {link_manual_src}/examples/Fieldmaps/Cav3.dat[Cav3.dat]
+* {link_manual_src}/examples/Fieldmaps/ZYKL9Z.NAR[ZYKL9Z.NAR]
+* {link_manual_src}/examples/Distribution/scdist.opal[scdist.opal]
+* {link_manual_src}/examples/Distribution/spdist.opal[spdist.opal]
+* {link_manual_src}/examples/Distribution/tdist.opal[tdist.opal]
 
 To run opal on a single node, just use this command:
 
@@ -205,7 +205,7 @@ the biggest amplitude is the betatron tune value at the given energy.
 Following is the input file for single bunch tracking with space charge
 effects in Injector II.
 
-{link_OPAL_doc}/examples/Injector2-sc.in[Injector2-sc.in]
+{link_manual_src}/examples/Injector2-sc.in[Injector2-sc.in]
 
 For the supplementary files see above, <<sec.tutorial.inj2>>