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Commit 4ac1a050 authored by adelmann's avatar adelmann :reminder_ribbon:
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remove unsessesary tests, and fix RestartTest-1, bounds to tight

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"RestartTest-1" "RestartTest-1"
stat "rms_x" last 1E-10 #this is a comment stat "rms_x" last 1E-8 #this is a comment
stat "rms_y" last 1E-10 #this is a comment stat "rms_y" last 1E-8 #this is a comment
stat "rms_s" last 1E-10 #this is a comment stat "rms_s" last 1E-8 #this is a comment
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5065 4930 5043 4962 1.229494913249517e-01 5065 4930 5043 4962
dd5a2e2b583b1f2548ca6eb05ba9b11f RestartTest-1.lbal d37287db200a208ba05134589cf6db27 RestartTest-1.lbal
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bd26d839024136865f18282906ac308c RestartTest-1.out 9ec687af9649d0dd0c6160d37372e8fe RestartTest-1.out
40a21efffca601f664e8fb1ddf4250e9 RestartTest-1.stat 6d6985717395ac1f1302c24d45ed839c RestartTest-1.stat
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File deleted
Option, PSDUMPFREQ=50;
Option, STATDUMPFREQ=1;
Option, ECHO=FALSE;
Option, AUTOPHASE=4;
Option, VERSION=10900;
Title, string="Phase 1 of PSI FEL 250 Injector with CTF3 RF Photoinjector";
REAL FINSB01_RACC_phi = 0;
REAL FINSB02_RACC_phi = 0;
REAL REPARTFREQ = 100;
REAL MINSTEPFORREBIN = 600;
REAL QB = 0.2e-9;
REAL BF = 2998.0;
REAL BC = QB*BF*1e6;
// Begin: CTF3 /////////////////////////////////////////////////////////////////////////////////////////////////
//
// Definition of CTF3 RF photoinjector.
//
GUN: SOURCE, ELEMEDGE=0.0;
//
// L: physical element length (real in m)
// VOLT: field scaling factor (real)
// FMAPFN: field file name (string)
// ELEMEDGE: physical start of the element on the floor (real in m)
// TYPE: specifies "STANDING" (default), "TRAVELLING" or "SINGLE GAP" structure
// FREQ: RF frequency of cavity (real in MHz).
//
FINSS_RGUN: RFCavity, L = 0.34986, VOLT = 100.0, FMAPFN = "CTF3_Ez_ASTRA.opal",
ELEMEDGE =0.0, TYPE = "STANDING", FREQ = BF,
LAG = -3.5/180.0*PI;
//
// L: physical element length (real in m)
// KS: field scaling factor (real)
// FMAPFN: field file name (string)
// ELEMEDGE: physical start of the element on the floor (real in m)
//
FIND1_MSOL10: Solenoid, L = 0.6, KS = 0.206, FMAPFN = "NEW_SINGLE_SOL_NOFRINGE_ASTRA.opal", ELEMEDGE = 0.3;
//
// L: physical element length (real in m)
// KS: field scaling factor (real)
// ELEMEDGE: physical start of the element on the floor (real in m)
//
FIND1_MQ10: Quadrupole, L=0.1, K1= 0.0, ELEMEDGE=1.38;
FIND1_MQ20: Quadrupole, L=0.1, K1= 0.0, ELEMEDGE=1.56;
FIND1_MQ30: Quadrupole, L=0.1, K1= 0.0, ELEMEDGE=1.74;
//elemento fittizio utilizzato per prolungare la linea del fascio
END: Solenoid, L=0.01, KS = 0.01, ELEMEDGE=100., FMAPFN="NEW_SINGLE_SOL_NOFRINGE_ASTRA.opal";
Injector: Line = (GUN, FINSS_RGUN, FIND1_MSOL10, FIND1_MQ10, FIND1_MQ20, FIND1_MQ30, END);
// End: CTF3 //////////////////////////////////////////////////////////////////////////////////////////////////
// Begin: Screen monitors ////////////////////////////////////////////////////////////////////////////////////
//
// Define screen monitors in beam line.
//
// L: physical element length (real in m). Always equal to 1 cm.
// ELEMEDGE: position of screen (real in m). This is where the particle information is taken.
// OUTFN: name of .h5 file to store data. Include ".h5" on end.
//
SCREEN1: Monitor, L = 0.01, ELEMEDGE = 0.902, OUTFN = "Screen1.h5";
SCREEN2: Monitor, L = 0.01, ELEMEDGE = 1.0165, OUTFN = "Screen2.h5";
//previous screen, virtual screen placed in the mid point of RFD
SCREEN3: Monitor, L = 0.01, ELEMEDGE = 1.1295, OUTFN = "Screen3.h5";
SCREEN4: Monitor, L = 0.01, ELEMEDGE = 2.2525, OUTFN = "Screen4.h5";
SCREEN5: Monitor, L = 0.01, ELEMEDGE = 2.735, OUTFN = "Screen5.h5";
SCREEN6: Monitor, L = 0.01, ELEMEDGE = 3.0, OUTFN = "Screen6.h5";
SCREEN7: Monitor, L = 0.01, ELEMEDGE = 3.126, OUTFN = "Screen7.h5";
SCREEN8: Monitor, L = 0.01, ELEMEDGE = 3.252, OUTFN = "Screen8.h5";
SCREEN9: Monitor, L = 0.01, ELEMEDGE = 4.126, OUTFN = "Screen9.h5";
SCREEN10: Monitor, L = 0.01, ELEMEDGE = 5.126, OUTFN = "Screen10.h5";
SCREENS: Line = (SCREEN1,SCREEN2,SCREEN3,SCREEN4,SCREEN5,SCREEN6,SCREEN7,SCREEN8,SCREEN9,SCREEN10);
// End: Screen monitors //////////////////////////////////////////////////////////////////////////////////////
// Begin: Fieldsolver ///////////////////////////////////////////
//
// Definition of first field solver.
//
Fs1:FIELDSOLVER, FSTYPE = FFT, MX = 16, MY = 16, MT = 32,
PARFFTX = true, PARFFTY = true, PARFFTT = true,
BCFFTX = open, BCFFTY = open, BCFFTT = open,
BBOXINCR = 1, GREENSF = INTEGRATED;
// End: Fieldsolver ////////////////////////////////////////////
Dist1:DISTRIBUTION, TYPE = "GUNGAUSSFLATTOPTH",
sigmax = 0.000395,
sigmapx = 0.0,
corrx = 0.0,
sigmay = 0.000395,
sigmapy = 0.0,
corry = 0.0,
sigmat = 0.0,
pt = 0.0,
sigmapt = 0.0,
corrt = 0.0,
tRise = 7.45e-12,
tFall = 7.45e-12,
tPulseFWHM = 10.4e-12,
ekin = 0.4,
NBIN = 5;
beam1: BEAM, PARTICLE = ELECTRON, pc = P0, NPART = 20000, BFREQ = BF, BCURRENT = BC, CHARGE = -1;
SELECT, LINE=Injector;
// Simulation of the gun with step size DTGUN
TRACK, LINE= Injector, BEAM=beam1, MAXSTEPS=100, DT=5.0e-12, ZSTOP=0.03;
RUN, METHOD = "PARALLEL-T", BEAM = beam1, FIELDSOLVER = Fs1, DISTRIBUTION = Dist1;
ENDTRACK;
QUIT;
\ No newline at end of file
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#!/bin/bash
for X in h5 lbal stat;do cp RestartTest-5.$X.bak RestartTest-5.$X;done
mpirun -np 4 $OPAL_EXE_PATH/opal RestartTest-5.in -restart 0 --commlib mpi --info 3 --warn 0 2>&1
"testin that we can restart from any step in file basename.h5"
stat "rms_x" last 1E-10 #this is a comment
stat "rms_y" last 1E-10 #this is a comment
stat "rms_s" last 1E-10 #this is a comment
#!/bin/bash
#$ -cwd
#$ -j y
#$ -pe orte 4
#$ -N RestartTest-5-RT
#$ -v LD_LIBRARY_PATH,OPAL_EXE_PATH,OPENMPI,REG_TEST_DIR
MACHINE_FILE=$TMPDIR/machinefile
awk '/^merlin/ {print $1" slots="$2}' $PE_HOSTFILE > $MACHINE_FILE
cp $MACHINE_FILE machinefile.last
cd $REG_TEST_DIR
for X in h5 lbal stat;do cp RestartTest-5.$X.bak RestartTest-5.$X;done
OPAL="$OPAL_EXE_PATH/opal RestartTest-5.in -restart 0 --commlib mpi --info 3 --warn 0 2>&1"
CMD="$OPENMPI/bin/mpirun -x LD_LIBRARY_PATH -machinefile $MACHINE_FILE -np $NSLOTS $OPAL "
$CMD
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37cfebcff16131a987a6060abab0f0fa RestartTest-5.lbal
Ippl> CommMPI: Parent process waiting for children ...
Ippl> CommMPI: Child 2 ready.
Ippl> CommMPI: Child 3 ready.
Ippl> CommMPI: Child 1 ready.
Ippl> CommMPI: Initialization complete.
{0}> ____ _____ ___
{0}> / __ \| __ \ /\ | |
{0}> | | | | |__) / \ | |
{0}> | | | | ___/ /\ \ | |
{0}> | |__| | | / ____ \| |____
{0}> \____/|_| /_/ \_\______|
OPAL{0}>
OPAL{0}> This is OPAL (Object Oriented Parallel Accelerator Library) Version 1.09.00
OPAL{0}>
OPAL{0}> (c) PSI, http://amas.web.psi.ch
OPAL{0}>
OPAL{0}> Please send cookies, goodies or other motivations (wine and beer ... )
OPAL{0}> to the OPAL developers opal@lists.psi.ch
OPAL{0}>
OPAL{0}> Time: 19:28:49 date: 09/08/2017
OPAL{0}>
Ippl> CommMPI: Started job 1 on host `merlinl02'.
Ippl> CommMPI: Started job 2 on host `merlinl02'.
Ippl> CommMPI: Started job 3 on host `merlinl02'.
OPAL{0}> Couldn't find startup file "/gpfs/home/kraus/init.opal".
OPAL{0}> Note: this is not mandatory for an OPAL simulation!
OPAL{0}>
OPAL{0}> * Reading input stream "RestartTest-5.in".
OPAL{0}[3]>
OPAL{0}[3]> 9 elements selected.
OPAL{0}[3]>
OPAL{0}> * **********************************************************************************
OPAL{0}> * Selected Tracking Method == PARALLEL-T, NEW TRACK
OPAL{0}> * **********************************************************************************
Ippl{0}[3]> BC set for normal Beam
Error{0}>
Error{0}> *** User error detected by function "H5PartWrapper::copyStepHeader"
Error{0}> *** in line 118 of file "RestartTest-5.in" at end of statement:
Error{1}>
Error{1}> *** User error detected by function "H5PartWrapper::copyStepHeader"
Error{1}> *** in line 118 of file "RestartTest-5.in" at end of statement:
Error{1}> RUN,METHOD="PARALLEL-T",BEAM=BEAM1,FIELDSOLVER=FS1,DISTRIBUTION=DIST1;
Error{1}> unknown data type: 0
Error{1}>
Error{2}>
Error{2}> *** User error detected by function "H5PartWrapper::copyStepHeader"
Error{2}> *** in line 118 of file "RestartTest-5.in" at end of statement:
Error{2}> RUN,METHOD="PARALLEL-T",BEAM=BEAM1,FIELDSOLVER=FS1,DISTRIBUTION=DIST1;
Error{2}> unknown data type: 0
Error{2}>
Error{3}>
Error{3}> *** User error detected by function "H5PartWrapper::copyStepHeader"
Error{3}> *** in line 118 of file "RestartTest-5.in" at end of statement:
Error{3}> RUN,METHOD="PARALLEL-T",BEAM=BEAM1,FIELDSOLVER=FS1,DISTRIBUTION=DIST1;
Error{3}> unknown data type: 0
Error{3}>
Error{0}> RUN,METHOD="PARALLEL-T",BEAM=BEAM1,FIELDSOLVER=FS1,DISTRIBUTION=DIST1;
Error{0}> unknown data type: 0
Error{0}>
OPAL{0}> * End of input stream "RestartTest-5.in".
Timings{0}> -----------------------------------------------------------------
Timings{0}> Timing results for 4 nodes:
Timings{0}> -----------------------------------------------------------------
Timings{0}> mainTimer........... Wall tot = 0.023863, CPU tot = 0.03
Timings{0}>
Timings{0}> Boundingbox......... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Compute Statistics.. Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> ComputePotential.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Create Distr........ Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Fast inside test.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Histogram........... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Initialize geometry. Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Inside test......... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Load Distr.......... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Particle Inside..... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Ray tracing......... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> Secondary emission.. Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SelfField total..... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: GreensFTotal.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: IntGreenF1...... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: IntGreenF2...... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: IntGreenF3...... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: MirrorRho1...... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: MirrorRho2...... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: Potential....... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: ShIntGreenF1.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: ShIntGreenF2.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: ShIntGreenF3.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> SF: ShIntGreenF4.... Wall max = 0, CPU max = 0
Timings{0}> Wall avg = 0, CPU avg = 0
Timings{0}> Wall min = 0, CPU min = 0
Timings{0}>
Timings{0}> -----------------------------------------------------------------
ef8949ae9f92cbd3ee3f7795f4348e2e RestartTest-5.out
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