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Commit 0149f320 authored by snuverink_j's avatar snuverink_j
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for #257: add option to dump offspring instead of parents (default true)

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optimizer/Optimizer/EA/FixedPisaNsga2.h
+ 23
− 11
View file @ 0149f320
......@@ -5,12 +5,13 @@
#include <stdlib.h>
#include <time.h>
#include <deque>
#include <fstream>
#include <map>
#include <string>
#include <sstream>
#include <vector>
#include <map>
#include <utility>
#include <fstream>
#include <vector>
#include "Comm/types.h"
#include "Util/Types.h"
......@@ -23,6 +24,7 @@
#include <boost/smart_ptr.hpp>
#include <boost/chrono.hpp>
#include <boost/property_tree/ptree.hpp>
#include "Util/Trace/Trace.h"
......@@ -76,6 +78,12 @@ public:
/// type used in solution state exchange with other optimizers
typedef std::vector< Individual > SolutionState_t;
/// type of our variator
typedef Individual Individual_t;
typedef Variator< Individual_t, CrossoverOperator, MutationOperator >
Variator_t;
/// alias for usage in template
using individual = typename FixedPisaNsga2::Individual_t;
protected:
......@@ -134,10 +142,6 @@ private:
/// collect some statistics of rejected and accepted individuals
boost::scoped_ptr<Statistics<size_t> > statistics_;
/// type of our variator
typedef Individual Individual_t;
typedef Variator< Individual_t, CrossoverOperator, MutationOperator >
Variator_t;
boost::scoped_ptr<Variator_t> variator_m;
std::vector<unsigned int> pp_all; ///< IDs of population
......@@ -155,7 +159,7 @@ private:
Comm::Bundle_t comms_;
/// buffer holding all finished job id's
std::queue<unsigned int> finishedBuffer_m;
std::deque<unsigned int> finishedBuffer_m;
/// mapping from unique job ID to individual
std::map<size_t, boost::shared_ptr<Individual> > jobmapping_m;
......@@ -190,7 +194,7 @@ private:
/// number of objectives
size_t dim_m;
/// current generation
size_t act_gen;
size_t act_gen = 1;
/// maximal generation (stopping criterion)
size_t maxGenerations_m;
......@@ -200,8 +204,9 @@ private:
// dump frequency
int dump_freq_;
int dump_freq_m;
/// dump offspring / parents flag
bool dump_offspring_m;
/// convergence accuracy if maxGenerations not set
double hvol_eps_;
double expected_hvol_;
......@@ -251,6 +256,13 @@ private:
/// global_population.
void dumpPopulationToFile();
void dumpPopulationToJSON();
void dumpIndividualToFile(int id,
boost::shared_ptr<individual>& ind,
std::ofstream& file,
const size_t numDigits);
void dumpIndividualToJSON(int id,
boost::shared_ptr<individual>& ind,
boost::property_tree::ptree& tree);
/**
* Get a random integer between [0, range]
......
optimizer/Optimizer/EA/FixedPisaNsga2.tcc
+ 92
− 75
View file @ 0149f320
......@@ -54,7 +54,9 @@ FixedPisaNsga2<CO, MO>::FixedPisaNsga2(
//FIXME: proper rand gen initialization (use boost?!)
srand(time(NULL) + comms_.island_id);
dump_freq_ = args->getArg<int>("dump-freq", 1, false);
dump_freq_m = args->getArg<int>("dump-freq", 1, false);
dump_offspring_m = args->getArg<bool>("dump-offspring", true, false);
maxGenerations_m = args->getArg<int>("maxGenerations", true);
resultFile_m = args->getArg<std::string>("outfile", "-th_generation.dat", false);
resultDir_m = args->getArg<std::string>("outdir", "generations", false);
......@@ -183,8 +185,6 @@ void FixedPisaNsga2<CO, MO>::initialize() {
template< template <class> class CO, template <class> class MO >
bool FixedPisaNsga2<CO, MO>::onMessage(MPI_Status status, size_t length) {
typedef typename FixedPisaNsga2::Individual_t individual;
MPITag_t tag = MPITag_t(status.MPI_TAG);
switch(tag) {
......@@ -226,7 +226,7 @@ bool FixedPisaNsga2<CO, MO>::onMessage(MPI_Status status, size_t length) {
//XXX: can we pass more than lambda_m files to selector?
unsigned int id =
variator_m->population()->add_individual(new_ind);
finishedBuffer_m.push(id);
finishedBuffer_m.push_back(id);
dump.clear();
dump.str(std::string());
......@@ -295,7 +295,7 @@ bool FixedPisaNsga2<CO, MO>::onMessage(MPI_Status status, size_t length) {
}
}
finishedBuffer_m.push(jid);
finishedBuffer_m.push_back(jid);
statistics_->changeStatisticBy("accepted", 1);
return true;
......@@ -347,8 +347,8 @@ void FixedPisaNsga2<CO, MO>::postPoll() {
stats << "__________________________________________" << std::endl;
progress_->log(stats);
// dump parents of current generation for visualization purposes
if((act_gen + 1) % dump_freq_ == 0) {
// dump current generation (or their parents)
if((act_gen + 1) % dump_freq_m == 0) {
dumpPopulationToFile();
dumpPopulationToJSON();
}
......@@ -374,8 +374,6 @@ void FixedPisaNsga2<CO, MO>::postPoll() {
template< template <class> class CO , template <class> class MO >
void FixedPisaNsga2<CO, MO>::exchangeSolutionStates() {
typedef typename FixedPisaNsga2::Individual_t individual;
size_t num_masters = args_m->getArg<size_t>("num-masters", 1, false);
if(num_masters <= 1 ||
......@@ -432,7 +430,7 @@ void FixedPisaNsga2<CO, MO>::toSelectorAndCommit() {
for(size_t i = 0; i < selector_mu_; i++) {
unsigned int id = finishedBuffer_m.front();
to_selector_.insert(id);
finishedBuffer_m.pop();
finishedBuffer_m.pop_front();
}
variator_m->population()->commit_individuals(to_selector_);
......@@ -442,8 +440,6 @@ void FixedPisaNsga2<CO, MO>::toSelectorAndCommit() {
template< template <class> class CO, template <class> class MO >
void FixedPisaNsga2<CO, MO>::dispatch_forward_solves() {
typedef typename FixedPisaNsga2::Individual_t individual;
while(variator_m->hasMoreIndividualsToEvaluate()) {
//reqVarContainer_t reqs;
......@@ -507,7 +503,7 @@ void FixedPisaNsga2<CO, MO>::runStateMachine() {
// in sel file.
case Variate: {
if( (maxGenerations_m > 0 && act_gen >= maxGenerations_m) ||
if( (maxGenerations_m > 0 && act_gen > maxGenerations_m) ||
(hvol_progress_ < conv_hvol_progress_) ||
(expected_hvol_ > 0.0 && fabs(current_hvol_ - expected_hvol_) < hvol_eps_)
) {
......@@ -555,8 +551,11 @@ void FixedPisaNsga2<CO, MO>::runStateMachine() {
//XXX: wait till the first alpha_m individuals are ready then start
// the selector
if(finishedBuffer_m.size() >= alpha_m) {
act_gen = 1;
if(dump_offspring_m == true) { // dump first generation - no parents yet
dumpPopulationToFile();
dumpPopulationToJSON();
}
act_gen = 2;
toSelectorAndCommit();
curState_m = InitializeSelector;
......@@ -572,9 +571,10 @@ void FixedPisaNsga2<CO, MO>::runStateMachine() {
// State 4 of the FSM: stopping state for the variator.
case Stop: {
// variator_m->population()->keepSurvivors(archive_);
dumpPopulationToFile();
dumpPopulationToJSON();
if (dump_offspring_m == false) {
dumpPopulationToFile();
dumpPopulationToJSON();
}
// don't clean population otherwise final hypervolume calculation can't be done
//variator_m->population()->clean_population();
curState_m = VariatorStopped;
......@@ -621,7 +621,6 @@ void FixedPisaNsga2<CO, MO>::runStateMachine() {
selection();
// write arc file (all individuals that could ever be used again)
typedef typename FixedPisaNsga2::Individual_t individual;
typename std::map<unsigned int, boost::shared_ptr<individual> >
::iterator it;
for(it = variator_m->population()->begin();
......@@ -676,12 +675,11 @@ void FixedPisaNsga2<CO, MO>::dumpPopulationToFile() {
// only dump old data format if the user requests it
if(! args_m->getArg<bool>("dump-dat", false, false)) return;
typedef typename FixedPisaNsga2::Individual_t individual;
boost::shared_ptr<individual> temp;
std::ofstream file;
std::ostringstream filename;
filename << resultDir_m << "/" << act_gen << "_" << resultFile_m
int fileNumber = act_gen;
if (dump_offspring_m == false) fileNumber--; // parents are from generation earlier (keeping filenumbers the same)
filename << resultDir_m << "/" << fileNumber << "_" << resultFile_m
<< "_" << comms_.island_id;
file.open(filename.str().c_str(), std::ios::out);
......@@ -712,39 +710,52 @@ void FixedPisaNsga2<CO, MO>::dumpPopulationToFile() {
file.precision(6);
file << std::scientific;
for(it = variator_m->population()->begin();
it != variator_m->population()->end(); it++) {
file << std::setw(numDigits + 1) << it->first << " ";
temp = it->second;
for(size_t i=0; i<temp->objectives_m.size(); i++)
file << std::setw(14) << temp->objectives_m[i] << " ";
file << " ";
for(size_t i=0; i<temp->genes_m.size(); i++)
file << std::setw(14) << temp->genes_m[i] << " ";
file << std::endl;
if (dump_offspring_m == true) {
for (auto id : finishedBuffer_m) {
auto ind = variator_m->population()->get_staging(id); // get from staging area
if (ind) // pointer might be uninitialised (should not happen)
dumpIndividualToFile(id, ind, file, numDigits);
else
std::cout << "Individual " << id << " from buffer not found!" << std::endl;
}
} else {
for(it = variator_m->population()->begin();
it != variator_m->population()->end(); it++) {
dumpIndividualToFile(it->first, it->second, file, numDigits);
}
}
file.close();
}
template< template <class> class CO, template <class> class MO >
void FixedPisaNsga2<CO, MO>::dumpIndividualToFile(int idx,
boost::shared_ptr<individual>& ind,
std::ofstream& file,
const size_t numDigits) {
file << std::setw(numDigits + 1) << idx << " ";
for(size_t i=0; i<ind->objectives_m.size(); i++)
file << std::setw(14) << ind->objectives_m[i] << " ";
file << " ";
for(size_t i=0; i<ind->genes_m.size(); i++)
file << std::setw(14) << ind->genes_m[i] << " ";
file << std::endl;
}
template< template <class> class CO, template <class> class MO >
void FixedPisaNsga2<CO, MO>::dumpPopulationToJSON() {
typedef typename FixedPisaNsga2::Individual_t individual;
typedef boost::property_tree::ptree ptree_t;
ptree_t tree;
tree.put("name", "opt-pilot");
tree.put(OPAL_PROJECT_NAME " version", OPAL_PROJECT_VERSION);
tree.put("git revision", Util::getGitRevision());
std::stringstream bounds;
DVarContainer_t::iterator itr = dvars_m.begin();
for (bounds_t::iterator it = dVarBounds_m.begin();
......@@ -755,62 +766,70 @@ void FixedPisaNsga2<CO, MO>::dumpPopulationToJSON() {
tree.put("dvar-bounds." + dvar, bounds.str());
bounds.str("");
}
ptree_t constraints;
for ( Expressions::Named_t::iterator it = constraints_m.begin();
it != constraints_m.end(); ++it )
{
std::string s = it->second->toString();
/// cleanup string to make json reader happy
s.erase(std::remove(s.begin(), s.end(), '"'), s.end());
// 22. November 2018
// https://stackoverflow.com/questions/2114466/creating-json-arrays-in-boost-using-property-trees
ptree_t constraint;
constraint.put("", s);
constraints.push_back(std::make_pair("", constraint));
}
tree.add_child("constraints", constraints);
boost::shared_ptr<individual> ind;
typename std::map<unsigned int, boost::shared_ptr<individual> >::iterator it;
for(it = variator_m->population()->begin();
it != variator_m->population()->end(); it++) {
std::string id = std::to_string(it->first);
Expressions::Named_t::iterator expr_it;
expr_it = objectives_m.begin();
ind = it->second;
for(size_t i=0; i < ind->objectives_m.size(); i++, expr_it++) {
std::string name = expr_it->first;
tree.put("population." + id + ".obj." + name, ind->objectives_m[i]);
if (dump_offspring_m == true) {
for (auto id : finishedBuffer_m) {
auto ind = variator_m->population()->get_staging(id); // get from staging area
if (ind) // pointer might be uninitialised (should not happen)
dumpIndividualToJSON(id, ind, tree);
else
std::cout << "Individual " << id << " from buffer not found!" << std::endl;
}
size_t i = 0;
for(itr = dvars_m.begin(); itr != dvars_m.end(); ++i, ++itr) {
std::string name = boost::get<VAR_NAME>(itr->second);
tree.put("population." + id + ".dvar." + name, ind->genes_m[i]);
} else {
for (auto it = variator_m->population()->begin();
it != variator_m->population()->end(); it++) {
dumpIndividualToJSON(it->first, it->second, tree);
}
}
std::ostringstream filename;
filename << resultDir_m << "/" << act_gen << "_" << resultFile_m
int fileNumber = act_gen;
if (dump_offspring_m == false) fileNumber--; // parents are from generation earlier (keeping filenumbers the same)
filename << resultDir_m << "/" << fileNumber << "_" << resultFile_m
<< "_" << comms_.island_id << ".json";
boost::property_tree::write_json(filename.str(), tree);
}
template< template <class> class CO, template <class> class MO >
void FixedPisaNsga2<CO, MO>::dumpIndividualToJSON(int idx,
boost::shared_ptr<individual>& ind,
boost::property_tree::ptree& tree) {
std::string id = std::to_string(idx);
Expressions::Named_t::iterator expr_it;
expr_it = objectives_m.begin();
for(size_t i=0; i < ind->objectives_m.size(); i++, expr_it++) {
std::string name = expr_it->first;
tree.put("population." + id + ".obj." + name, ind->objectives_m[i]);
}
size_t i = 0;
for(DVarContainer_t::iterator itr = dvars_m.begin(); itr != dvars_m.end(); ++i, ++itr) {
std::string name = boost::get<VAR_NAME>(itr->second);
tree.put("population." + id + ".dvar." + name, ind->genes_m[i]);
}
}
/*-----------------------| selection functions|--------------------------*/
......@@ -909,7 +928,6 @@ void FixedPisaNsga2<CO, MO>::calcFitnesses()
template< template <class> class CO, template <class> class MO >
void FixedPisaNsga2<CO, MO>::calcDistances()
{
typedef typename FixedPisaNsga2::Individual_t individual;
int i, j, l;
int size = pp_all.size();
double dmax = 1E99 / (dim_m + 1);
......@@ -1024,7 +1042,6 @@ int FixedPisaNsga2<CO, MO>::dominates(unsigned int p_ind_a, unsigned int p_ind_b
int a_is_worse = 0, b_is_worse = 0;
// int equal = 1;
typedef typename FixedPisaNsga2::Individual_t individual;
boost::shared_ptr<individual> ind1 =
variator_m->population()->get_individual(p_ind_a);
boost::shared_ptr<individual> ind2 =
......
src/Optimize/OptimizeCmd.cpp
+ 5
− 1
View file @ 0149f320
......@@ -63,6 +63,7 @@ namespace {
SELECTOR,
DUMPDAT,
DUMPFREQ,
DUMPOFFSPRING,
NUMINDGEN,
MAXGENERATIONS,
EPSILON,
......@@ -112,7 +113,9 @@ OptimizeCmd::OptimizeCmd():
itsAttr[DUMPDAT] = Attributes::makeReal
("DUMP_DAT", "Dump old generation data format with frequency (PISA only)");
itsAttr[DUMPFREQ] = Attributes::makeReal
("DUMP_FREQ", "Dump old generation data format with frequency (PISA only)");
("DUMP_FREQ", "Dump generation data with frequency (PISA only)");
itsAttr[DUMPOFFSPRING] = Attributes::makeBool
("DUMP_OFFSPRING", "Dump offspring (instead of parent population), default: true");
itsAttr[NUMINDGEN] = Attributes::makeReal
("NUM_IND_GEN", "Number of individuals in a generation (PISA only)");
itsAttr[MAXGENERATIONS] = Attributes::makeReal
......@@ -238,6 +241,7 @@ void OptimizeCmd::execute() {
{SELECTOR, "selector"},
{DUMPDAT, "dump-dat"},
{DUMPFREQ, "dump-freq"},
{DUMPOFFSPRING, "dump-offspring"},
{NUMINDGEN, "num-ind-gen"},
{MAXGENERATIONS, "maxGenerations"},
{EPSILON, "epsilon"},
......
tools/emacs/opal.el
+ 2
− 4
View file @ 0149f320
......@@ -138,13 +138,11 @@
)
"Highlighting expressions for OPAL mode (seqediting).")
;(concat "\\<" (regexp-opt '("A" "ADD" "AMPLITUDE_MODEL" "ANGLE" "APERTURE" "APVETO" "AT" "AUTOPHASE" "B" "BBOXINCR" "BCFFTZ" "BCFFTT" "BCFFTX" "BCFFTY" "BCURRENT" "BEAM_PHIINIT" "BEAM_PRINIT" "BEAM_RINIT" "BFREQ" "BMAX" "BOUNDPDESTROYFQ" "BSCALE" "BY" "CALLS" "CATHTEMP" "CENTRE" "CHARGE" "CLASS" "CLEAR" "CMD" "COEFDENOM" "COEFNUM" "COLUMN" "CONDUCT" "CONSTRAINTS" "CONST_LENGTH" "CONV_HVOL_PROG" "CORRX" "CORRY" "CORRZ" "CSRDUMP" "CUTOFFLONG" "CUTOFFPX" "CUTOFFPY" "CUTOFFPZ" "CUTOFFR" "CUTOFFX" "CUTOFFY" "CYHARMON" "CZERO" "DESIGNENERGY" "DK1" "DK1S" "DK2" "DK2S" "DKN" "DKNR" "DKS" "DKSR" "DLAG" "DPHI" "DPSI" "DS" "DT" "DTHETA" "DUMP" "DUMP_DAT" "DUMP_FREQ" "DVARS" "DVOLT" "DX" "DY" "DZ" "E1" "E2" "EBDUMP" "ECHO" "EKIN" "ELASER" "ELEMEDGE" "ELEMENT" "EMISSIONMODEL" "EMISSIONSTEPS" "EMITTED" "ENABLEHDF5" "ENERGY" "ENDSEQUENCE" "END_NORMAL_X" "END_NORMAL_Y" "END_POSITION_X" "END_POSITION_Y" "EPSILON" "ESCALE" "ET" "EVERYSTEP" "EX" "EXPECTED_HYPERVOL" "EXPR" "EY" "FE" "FGEOM" "FIELDMAPDIR" "FIELDMAPDIR" "FILE" "FINT" "FMAPFN" "FNAME" "FORM" "FREQ" "FREQUENCY_MODEL" "FROM" "FSTYPE" "FTOSCAMPLITUDE" "FTOSCPERIODS" "FULL" "GAMMA" "GAP" "GAPWIDTH" "GENE_MUTATION_PROBABILITY" "GEOMETRY" "GREENSF" "H1" "H2" "HAPERT" "HARMON" "HARMONIC_NUMBER" "HGAP" "HKICK" "HYPERVOLREFERENCE" "IDEALIZED" "INITIAL_OPTIMIZATION" "IMAGENAME" "INFO" "INITIALPOPULATION" "INPUT" "INPUTMOUNITS" "INTENSITYCUT" "INTERPL" "IS_CLOSED" "ITSOLVER" "K0" "K0S" "K1" "K1S" "K2" "K2S" "K3" "K3S" "KEYWORD" "KICK" "KN" "KS" "L" "LAG" "LASERPROFFN" "LATTICE_PHIINIT" "LATTICE_RINIT" "LATTICE_THETAINIT" "LENGTH" "LEVEL" "LOGBENDTRAJECTORY" "LOWER" "LOWERBOUND" "MASS" "MAXGENERATIONS" "MAXITERS" "MAXR" "MAXSTEPS" "MAXZ" "METHOD" "MINR" "MINZ" "MODE" "MREX" "MREY" "MSCALX" "MSCALY" "MT" "MUTATION_PROBABILITY" "MX" "MY" "NBIN" "NFREQ" "NLEFT" "NO" "NPART" "NPOINTS" "NRIGHT" "NUMCELLS" "NUM_COWORKERS" "NUM_IND_GEN" "NUM_MASTERS" "OBJECTIVES" "OFFSETPX" "OFFSETPY" "OFFSETPZ" "OFFSETT" "OFFSETX" "OFFSETY" "OFFSETZ" "ONE_PILOT_CONVERGE" "OPCHARGE" "OPMASS" "OPYIELD" "ORDER" "ORIENTATION" "ORIGIN" "OUTDIR" "OUTFN" "OUTPUT" "P1" "P2" "P3" "P4" "PARFFTT" "PARFFTX" "PARFFTY" "PARTICLE" "PARTICLEMATTERINTERACTION" "PATTERN" "PC" "PDIS" "PHI" "PHI0" "PHIINIT" "PLANE" "POLYORDER" "PRECMODE" "PRINIT" "PSDUMPEACHTURN" "PSDUMPFRAME" "PSDUMPFREQ" "PSI" "PTC" "PYMULT" "PZINIT" "PZMULT" "R51" "R52" "R61" "R62" "RADIUS" "RANDOM" "RANGE" "RASTER" "RECOMBINATION_PROBABILITY" "REFER" "REFPOS" "REPARTFREQ" "RESET" "RFFREQ" "RFMAPFN" "RFPHI" "RINIT" "RMAX" "RMIN" "ROTATION" "ROW" "S" "SAMPLINGS" "SCALABLE" "SEED" "SELECTED" "SELECTOR" "SEQUENCE" "SIGMA" "SIGMAPX" "SIGMAPY" "SIGMAPZ" "SIGMAR" "SIGMAT" "SIGMAX" "SIGMAY" "SIGMAZ" "SIGX" "SIGY" "SIMBIN_CROSSOVER_NU" "SIMTMPDIR" "SLPTC" "SOL_SYNCH" "SPLIT" "SPTDUMPFREQ" "STATDUMPFREQ" "STEP" "STEPSPERTURN" "STOP" "STRING" "SUPERPOSE" "SYMMETRY" "T0" "TABLE" "TAU" "TELL" "TEMPLATEDIR" "TFALL" "THETA" "THIN" "THRESHOLD" "TIME" "TIMEINTEGRATOR" "TMULT" "TO" "TOL" "TOLERANCE" "TPULSEFWHM" "TRACE" "TRISE" "TURNS" "TYPE" "UPPER" "UPPERBOUND" "VARIABLE" "VERIFY" "VERSION" "VKICK" "VMAX" "VMIN" "VOLT" "W" "WAKEF" "WARN" "WARP" "WEIGHT" "WIDTH" "WRITETOFILE" "X" "XEND" "XMA" "XMULT" "XSIZE" "XSTART" "Y" "YEND" "YMA" "YMULT" "YSIZE" "YSTART" "Z" "Z0" "ZEND" "ZINIT" "ZSTART" "ZSTOP") t) "\\>")
;(concat "\\<" (regexp-opt '("A" "ADD" "AMPLITUDE_MODEL" "ANGLE" "APERTURE" "APVETO" "AT" "AUTOPHASE" "B" "BBOXINCR" "BCFFTZ" "BCFFTT" "BCFFTX" "BCFFTY" "BCURRENT" "BEAM_PHIINIT" "BEAM_PRINIT" "BEAM_RINIT" "BFREQ" "BMAX" "BOUNDPDESTROYFQ" "BSCALE" "BY" "CALLS" "CATHTEMP" "CENTRE" "CHARGE" "CLASS" "CLEAR" "CMD" "COEFDENOM" "COEFNUM" "COLUMN" "CONDUCT" "CONSTRAINTS" "CONST_LENGTH" "CONV_HVOL_PROG" "CORRX" "CORRY" "CORRZ" "CSRDUMP" "CUTOFFLONG" "CUTOFFPX" "CUTOFFPY" "CUTOFFPZ" "CUTOFFR" "CUTOFFX" "CUTOFFY" "CYHARMON" "CZERO" "DESIGNENERGY" "DK1" "DK1S" "DK2" "DK2S" "DKN" "DKNR" "DKS" "DKSR" "DLAG" "DPHI" "DPSI" "DS" "DT" "DTHETA" "DUMP" "DUMP_DAT" "DUMP_FREQ" "DUMP_OFFSPRING" "DVARS" "DVOLT" "DX" "DY" "DZ" "E1" "E2" "EBDUMP" "ECHO" "EKIN" "ELASER" "ELEMEDGE" "ELEMENT" "EMISSIONMODEL" "EMISSIONSTEPS" "EMITTED" "ENABLEHDF5" "ENERGY" "ENDSEQUENCE" "END_NORMAL_X" "END_NORMAL_Y" "END_POSITION_X" "END_POSITION_Y" "EPSILON" "ESCALE" "ET" "EVERYSTEP" "EX" "EXPECTED_HYPERVOL" "EXPR" "EY" "FE" "FGEOM" "FIELDMAPDIR" "FIELDMAPDIR" "FILE" "FINT" "FMAPFN" "FNAME" "FORM" "FREQ" "FREQUENCY_MODEL" "FROM" "FSTYPE" "FTOSCAMPLITUDE" "FTOSCPERIODS" "FULL" "GAMMA" "GAP" "GAPWIDTH" "GENE_MUTATION_PROBABILITY" "GEOMETRY" "GREENSF" "H1" "H2" "HAPERT" "HARMON" "HARMONIC_NUMBER" "HGAP" "HKICK" "HYPERVOLREFERENCE" "IDEALIZED" "INITIAL_OPTIMIZATION" "IMAGENAME" "INFO" "INITIALPOPULATION" "INPUT" "INPUTMOUNITS" "INTENSITYCUT" "INTERPL" "IS_CLOSED" "ITSOLVER" "K0" "K0S" "K1" "K1S" "K2" "K2S" "K3" "K3S" "KEYWORD" "KICK" "KN" "KS" "L" "LAG" "LASERPROFFN" "LATTICE_PHIINIT" "LATTICE_RINIT" "LATTICE_THETAINIT" "LENGTH" "LEVEL" "LOGBENDTRAJECTORY" "LOWER" "LOWERBOUND" "MASS" "MAXGENERATIONS" "MAXITERS" "MAXR" "MAXSTEPS" "MAXZ" "METHOD" "MINR" "MINZ" "MODE" "MREX" "MREY" "MSCALX" "MSCALY" "MT" "MUTATION_PROBABILITY" "MX" "MY" "NBIN" "NFREQ" "NLEFT" "NO" "NPART" "NPOINTS" "NRIGHT" "NUMCELLS" "NUM_COWORKERS" "NUM_IND_GEN" "NUM_MASTERS" "OBJECTIVES" "OFFSETPX" "OFFSETPY" "OFFSETPZ" "OFFSETT" "OFFSETX" "OFFSETY" "OFFSETZ" "ONE_PILOT_CONVERGE" "OPCHARGE" "OPMASS" "OPYIELD" "ORDER" "ORIENTATION" "ORIGIN" "OUTDIR" "OUTFN" "OUTPUT" "P1" "P2" "P3" "P4" "PARFFTT" "PARFFTX" "PARFFTY" "PARTICLE" "PARTICLEMATTERINTERACTION" "PATTERN" "PC" "PDIS" "PHI" "PHI0" "PHIINIT" "PLANE" "POLYORDER" "PRECMODE" "PRINIT" "PSDUMPEACHTURN" "PSDUMPFRAME" "PSDUMPFREQ" "PSI" "PTC" "PYMULT" "PZINIT" "PZMULT" "R51" "R52" "R61" "R62" "RADIUS" "RANDOM" "RANGE" "RASTER" "RECOMBINATION_PROBABILITY" "REFER" "REFPOS" "REPARTFREQ" "RESET" "RFFREQ" "RFMAPFN" "RFPHI" "RINIT" "RMAX" "RMIN" "ROTATION" "ROW" "S" "SAMPLINGS" "SCALABLE" "SEED" "SELECTED" "SELECTOR" "SEQUENCE" "SIGMA" "SIGMAPX" "SIGMAPY" "SIGMAPZ" "SIGMAR" "SIGMAT" "SIGMAX" "SIGMAY" "SIGMAZ" "SIGX" "SIGY" "SIMBIN_CROSSOVER_NU" "SIMTMPDIR" "SLPTC" "SOL_SYNCH" "SPLIT" "SPTDUMPFREQ" "STATDUMPFREQ" "STEP" "STEPSPERTURN" "STOP" "STRING" "SUPERPOSE" "SYMMETRY" "T0" "TABLE" "TAU" "TELL" "TEMPLATEDIR" "TFALL" "THETA" "THIN" "THRESHOLD" "TIME" "TIMEINTEGRATOR" "TMULT" "TO" "TOL" "TOLERANCE" "TPULSEFWHM" "TRACE" "TRISE" "TURNS" "TYPE" "UPPER" "UPPERBOUND" "VARIABLE" "VERIFY" "VERSION" "VKICK" "VMAX" "VMIN" "VOLT" "W" "WAKEF" "WARN" "WARP" "WEIGHT" "WIDTH" "WRITETOFILE" "X" "XEND" "XMA" "XMULT" "XSIZE" "XSTART" "Y" "YEND" "YMA" "YMULT" "YSIZE" "YSTART" "Z" "Z0" "ZEND" "ZINIT" "ZSTART" "ZSTOP") t) "\\>")
(defconst opal-font-lock-keywords-parameters
(list
'("\\<\\(A\\(?:DD\\|MPLITUDE_MODEL\\|NGLE\\|P\\(?:ERTURE\\|VETO\\)\\|T\\|UTOPHASE\\)\\|B\\(?:BOXINCR\\|C\\(?:FFT[TXYZ]\\|URRENT\\)\\|EAM_\\(?:\\(?:P\\(?:HI\\|R\\)\\|R\\)INIT\\)\\|FREQ\\|MAX\\|OUNDPDESTROYFQ\\|SCALE\\|Y\\)\\|C\\(?:A\\(?:LLS\\|THTEMP\\)\\|ENTRE\\|HARGE\\|L\\(?:ASS\\|EAR\\)\\|MD\\|O\\(?:EF\\(?:\\(?:DENO\\|NU\\)M\\)\\|LUMN\\|N\\(?:DUCT\\|ST\\(?:RAINTS\\|_LENGTH\\)\\|V_HVOL_PROG\\)\\|RR[XYZ]\\)\\|SRDUMP\\|UTOFF\\(?:LONG\\|P[XYZ]\\|[RXY]\\)\\|YHARMON\\|ZERO\\)\\|D\\(?:ESIGNENERGY\\|K\\(?:1S\\|2S\\|[NS]R\\|[12NS]\\)\\|LAG\\|P\\(?:[HS]I\\)\\|THETA\\|UMP\\(?:_\\(?:DAT\\|FREQ\\)\\)?\\|V\\(?:ARS\\|OLT\\)\\|[STXYZ]\\)\\|E\\(?:BDUMP\\|CHO\\|KIN\\|L\\(?:ASER\\|EME\\(?:DGE\\|NT\\)\\)\\|MI\\(?:SSION\\(?:MODEL\\|STEPS\\)\\|TTED\\)\\|N\\(?:ABLEHDF5\\|D\\(?:SEQUENCE\\|_\\(?:NORMAL_[XY]\\|POSITION_[XY]\\)\\)\\|ERGY\\)\\|PSILON\\|SCALE\\|VERYSTEP\\|XP\\(?:ECTED_HYPERVOL\\|R\\)\\|[12TXY]\\)\\|F\\(?:E\\|GEOM\\|I\\(?:ELDMAPDIR\\|LE\\|NT\\)\\|MAPFN\\|NAME\\|ORM\\|R\\(?:EQ\\(?:UENCY_MODEL\\)?\\|OM\\)\\|STYPE\\|TOSC\\(?:AMPLITUDE\\|PERIODS\\)\\|ULL\\)\\|G\\(?:A\\(?:MMA\\|P\\(?:WIDTH\\)?\\)\\|E\\(?:\\(?:NE_MUTATION_PROBABILIT\\|OMETR\\)Y\\)\\|REENSF\\)\\|H\\(?:A\\(?:PERT\\|RMON\\(?:IC_NUMBER\\)?\\)\\|GAP\\|KICK\\|YPERVOLREFERENCE\\|[12]\\)\\|I\\(?:DEALIZED\\|MAGENAME\\|N\\(?:FO\\|ITIAL\\(?:\\(?:POPUL\\|_OPTIMIZ\\)ATION\\)\\|PUT\\(?:MOUNITS\\)?\\|TE\\(?:NSITYCUT\\|RPL\\)\\)\\|S_CLOSED\\|TSOLVER\\)\\|K\\(?:0S\\|1S\\|2S\\|3S\\|EYWORD\\|ICK\\|[0-3NS]\\)\\|L\\(?:A\\(?:G\\|SERPROFFN\\|TTICE_\\(?:\\(?:PHI\\|R\\|THETA\\)INIT\\)\\)\\|E\\(?:NGTH\\|VEL\\)\\|O\\(?:GBENDTRAJECTORY\\|WER\\(?:BOUND\\)?\\)\\)\\|M\\(?:A\\(?:SS\\|X\\(?:GENERATIONS\\|ITERS\\|STEPS\\|[RZ]\\)\\)\\|ETHOD\\|IN[RZ]\\|ODE\\|RE[XY]\\|SCAL[XY]\\|UTATION_PROBABILITY\\|[TXY]\\)\\|N\\(?:BIN\\|FREQ\\|LEFT\\|O\\|P\\(?:ART\\|OINTS\\)\\|RIGHT\\|UM\\(?:CELLS\\|_\\(?:COWORKERS\\|IND_GEN\\|MASTERS\\)\\)\\)\\|O\\(?:BJECTIVES\\|FFSET\\(?:P[XYZ]\\|[TXYZ]\\)\\|NE_PILOT_CONVERGE\\|P\\(?:CHARGE\\|MASS\\|YIELD\\)\\|R\\(?:DER\\|I\\(?:\\(?:ENTATIO\\|GI\\)N\\)\\)\\|UT\\(?:DIR\\|FN\\|PUT\\)\\)\\|P\\(?:A\\(?:R\\(?:FFT[TXY]\\|TICLE\\(?:MATTERINTERACTION\\)?\\)\\|TTERN\\)\\|DIS\\|HI\\(?:0\\|INIT\\)?\\|LANE\\|OLYORDER\\|R\\(?:ECMODE\\|INIT\\)\\|S\\(?:DUMP\\(?:EACHTURN\\|FR\\(?:AME\\|EQ\\)\\)\\|I\\)\\|TC\\|\\(?:YMUL\\|Z\\(?:INI\\|MUL\\)\\)T\\|[1-4C]\\)\\|R\\(?:5[12]\\|6[12]\\|A\\(?:DIUS\\|N\\(?:DOM\\|GE\\)\\|STER\\)\\|E\\(?:COMBINATION_PROBABILITY\\|F\\(?:ER\\|POS\\)\\|PARTFREQ\\|SET\\)\\|F\\(?:FREQ\\|MAPFN\\|PHI\\)\\|INIT\\|M\\(?:AX\\|IN\\)\\|O\\(?:TATION\\|W\\)\\)\\|S\\(?:AMPLINGS\\|CALABLE\\|E\\(?:ED\\|LECT\\(?:ED\\|OR\\)\\|QUENCE\\)\\|I\\(?:G\\(?:MA\\(?:P[XYZ]\\|[RTXYZ]\\)?\\|[XY]\\)\\|M\\(?:BIN_CROSSOVER_NU\\|TMPDIR\\)\\)\\|LPTC\\|OL_SYNCH\\|P\\(?:LIT\\|TDUMPFREQ\\)\\|T\\(?:ATDUMPFREQ\\|EP\\(?:SPERTURN\\)?\\|OP\\|RING\\)\\|UPERPOSE\\|YMMETRY\\)\\|T\\(?:A\\(?:BLE\\|U\\)\\|E\\(?:LL\\|MPLATEDIR\\)\\|FALL\\|H\\(?:ETA\\|IN\\|RESHOLD\\)\\|IME\\(?:INTEGRATOR\\)?\\|MULT\\|OL\\(?:ERANCE\\)?\\|PULSEFWHM\\|R\\(?:\\(?:AC\\|IS\\)E\\)\\|URNS\\|YPE\\|[0O]\\)\\|UPPER\\(?:BOUND\\)?\\|V\\(?:ARIABLE\\|ER\\(?:IFY\\|SION\\)\\|KICK\\|M\\(?:AX\\|IN\\)\\|OLT\\)\\|W\\(?:A\\(?:KEF\\|R[NP]\\)\\|EIGHT\\|IDTH\\|RITETOFILE\\)\\|X\\(?:END\\|M\\(?:A\\|ULT\\)\\|S\\(?:IZE\\|TART\\)\\)\\|Y\\(?:END\\|M\\(?:A\\|ULT\\)\\|S\\(?:IZE\\|TART\\)\\)\\|Z\\(?:0\\|END\\|INIT\\|ST\\(?:ART\\|OP\\)\\)\\|[ABLSW-Z]\\)\\>"
'("\\<\\(A\\(?:DD\\|MPLITUDE_MODEL\\|NGLE\\|P\\(?:ERTURE\\|VETO\\)\\|T\\|UTOPHASE\\)\\|B\\(?:BOXINCR\\|C\\(?:FFT[TXYZ]\\|URRENT\\)\\|EAM_\\(?:\\(?:P\\(?:HI\\|R\\)\\|R\\)INIT\\)\\|FREQ\\|MAX\\|OUNDPDESTROYFQ\\|SCALE\\|Y\\)\\|C\\(?:A\\(?:LLS\\|THTEMP\\)\\|ENTRE\\|HARGE\\|L\\(?:ASS\\|EAR\\)\\|MD\\|O\\(?:EF\\(?:\\(?:DENO\\|NU\\)M\\)\\|LUMN\\|N\\(?:DUCT\\|ST\\(?:RAINTS\\|_LENGTH\\)\\|V_HVOL_PROG\\)\\|RR[XYZ]\\)\\|SRDUMP\\|UTOFF\\(?:LONG\\|P[XYZ]\\|[RXY]\\)\\|YHARMON\\|ZERO\\)\\|D\\(?:ESIGNENERGY\\|K\\(?:1S\\|2S\\|[NS]R\\|[12NS]\\)\\|LAG\\|P\\(?:[HS]I\\)\\|THETA\\|UMP\\(?:_\\(?:DAT\\|FREQ\\|OFFSPRING\\)\\)?\\|V\\(?:ARS\\|OLT\\)\\|[STXYZ]\\)\\|E\\(?:BDUMP\\|CHO\\|KIN\\|L\\(?:ASER\\|EME\\(?:DGE\\|NT\\)\\)\\|MI\\(?:SSION\\(?:MODEL\\|STEPS\\)\\|TTED\\)\\|N\\(?:ABLEHDF5\\|D\\(?:SEQUENCE\\|_\\(?:NORMAL_[XY]\\|POSITION_[XY]\\)\\)\\|ERGY\\)\\|PSILON\\|SCALE\\|VERYSTEP\\|XP\\(?:ECTED_HYPERVOL\\|R\\)\\|[12TXY]\\)\\|F\\(?:E\\|GEOM\\|I\\(?:ELDMAPDIR\\|LE\\|NT\\)\\|MAPFN\\|NAME\\|ORM\\|R\\(?:EQ\\(?:UENCY_MODEL\\)?\\|OM\\)\\|STYPE\\|TOSC\\(?:AMPLITUDE\\|PERIODS\\)\\|ULL\\)\\|G\\(?:A\\(?:MMA\\|P\\(?:WIDTH\\)?\\)\\|E\\(?:\\(?:NE_MUTATION_PROBABILIT\\|OMETR\\)Y\\)\\|REENSF\\)\\|H\\(?:A\\(?:PERT\\|RMON\\(?:IC_NUMBER\\)?\\)\\|GAP\\|KICK\\|YPERVOLREFERENCE\\|[12]\\)\\|I\\(?:DEALIZED\\|MAGENAME\\|N\\(?:FO\\|ITIAL\\(?:\\(?:POPUL\\|_OPTIMIZ\\)ATION\\)\\|PUT\\(?:MOUNITS\\)?\\|TE\\(?:NSITYCUT\\|RPL\\)\\)\\|S_CLOSED\\|TSOLVER\\)\\|K\\(?:0S\\|1S\\|2S\\|3S\\|EYWORD\\|ICK\\|[0-3NS]\\)\\|L\\(?:A\\(?:G\\|SERPROFFN\\|TTICE_\\(?:\\(?:PHI\\|R\\|THETA\\)INIT\\)\\)\\|E\\(?:NGTH\\|VEL\\)\\|O\\(?:GBENDTRAJECTORY\\|WER\\(?:BOUND\\)?\\)\\)\\|M\\(?:A\\(?:SS\\|X\\(?:GENERATIONS\\|ITERS\\|STEPS\\|[RZ]\\)\\)\\|ETHOD\\|IN[RZ]\\|ODE\\|RE[XY]\\|SCAL[XY]\\|UTATION_PROBABILITY\\|[TXY]\\)\\|N\\(?:BIN\\|FREQ\\|LEFT\\|O\\|P\\(?:ART\\|OINTS\\)\\|RIGHT\\|UM\\(?:CELLS\\|_\\(?:COWORKERS\\|IND_GEN\\|MASTERS\\)\\)\\)\\|O\\(?:BJECTIVES\\|FFSET\\(?:P[XYZ]\\|[TXYZ]\\)\\|NE_PILOT_CONVERGE\\|P\\(?:CHARGE\\|MASS\\|YIELD\\)\\|R\\(?:DER\\|I\\(?:\\(?:ENTATIO\\|GI\\)N\\)\\)\\|UT\\(?:DIR\\|FN\\|PUT\\)\\)\\|P\\(?:A\\(?:R\\(?:FFT[TXY]\\|TICLE\\(?:MATTERINTERACTION\\)?\\)\\|TTERN\\)\\|DIS\\|HI\\(?:0\\|INIT\\)?\\|LANE\\|OLYORDER\\|R\\(?:ECMODE\\|INIT\\)\\|S\\(?:DUMP\\(?:EACHTURN\\|FR\\(?:AME\\|EQ\\)\\)\\|I\\)\\|TC\\|\\(?:YMUL\\|Z\\(?:INI\\|MUL\\)\\)T\\|[1-4C]\\)\\|R\\(?:5[12]\\|6[12]\\|A\\(?:DIUS\\|N\\(?:DOM\\|GE\\)\\|STER\\)\\|E\\(?:COMBINATION_PROBABILITY\\|F\\(?:ER\\|POS\\)\\|PARTFREQ\\|SET\\)\\|F\\(?:FREQ\\|MAPFN\\|PHI\\)\\|INIT\\|M\\(?:AX\\|IN\\)\\|O\\(?:TATION\\|W\\)\\)\\|S\\(?:AMPLINGS\\|CALABLE\\|E\\(?:ED\\|LECT\\(?:ED\\|OR\\)\\|QUENCE\\)\\|I\\(?:G\\(?:MA\\(?:P[XYZ]\\|[RTXYZ]\\)?\\|[XY]\\)\\|M\\(?:BIN_CROSSOVER_NU\\|TMPDIR\\)\\)\\|LPTC\\|OL_SYNCH\\|P\\(?:LIT\\|TDUMPFREQ\\)\\|T\\(?:ATDUMPFREQ\\|EP\\(?:SPERTURN\\)?\\|OP\\|RING\\)\\|UPERPOSE\\|YMMETRY\\)\\|T\\(?:A\\(?:BLE\\|U\\)\\|E\\(?:LL\\|MPLATEDIR\\)\\|FALL\\|H\\(?:ETA\\|IN\\|RESHOLD\\)\\|IME\\(?:INTEGRATOR\\)?\\|MULT\\|OL\\(?:ERANCE\\)?\\|PULSEFWHM\\|R\\(?:\\(?:AC\\|IS\\)E\\)\\|URNS\\|YPE\\|[0O]\\)\\|UPPER\\(?:BOUND\\)?\\|V\\(?:ARIABLE\\|ER\\(?:IFY\\|SION\\)\\|KICK\\|M\\(?:AX\\|IN\\)\\|OLT\\)\\|W\\(?:A\\(?:KEF\\|R[NP]\\)\\|EIGHT\\|IDTH\\|RITETOFILE\\)\\|X\\(?:END\\|M\\(?:A\\|ULT\\)\\|S\\(?:IZE\\|TART\\)\\)\\|Y\\(?:END\\|M\\(?:A\\|ULT\\)\\|S\\(?:IZE\\|TART\\)\\)\\|Z\\(?:0\\|END\\|INIT\\|ST\\(?:ART\\|OP\\)\\)\\|[ABLSW-Z]\\)\\>"
. font-lock-variable-name-face)
)
"Highlighting expressions for OPAL mode (parameters).")
......
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