Merge branch '501-student-work-of-frey_m-semester-thesis' into 'master'

File header to semester thesis files of @frey_m

See merge request !319

src/Distribution/ClosedOrbitFinder.h

-/**
- * @file ClosedOrbitFinder.h
- * The algorithm is based on the paper of M. M. Gordon: "Computation of closed orbits and basic focusing properties for
- * sector-focused cyclotrons and the design of 'cyclops'" (1983)
- * As template arguments one chooses the type of the variables and the integrator for the ODEs. The supported steppers can
- * be found on
- * http://www.boost.org/ where it is part of the library Odeint.
- *
- * @author Matthias Frey
- * @version 1.0
- */
-
+//
+// Class ClosedOrbitFinder
+//   This class finds a closed orbit of a cyclotron for a given energy.
+//   The algorithm is based on the paper of M. M. Gordon: "Computation of
+//   closed orbits and basic focusing properties for sector-focused cyclotrons
+//   and the design of 'cyclops'" (1983)
+//   As template arguments one chooses the type of the variables and the
+//   integrator for the ODEs. The supported steppers can be found on
+//   http://www.boost.org/ where it is part of the library Odeint.
+//
+// Copyright (c) 2014, Matthias Frey, ETH Zürich
+// All rights reserved
+//
+// Implemented as part of the Semester thesis by Matthias Frey
+// "Matched Distributions in Cyclotrons"
+//
+// This file is part of OPAL.
+//
+// OPAL is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// You should have received a copy of the GNU General Public License
+// along with OPAL. If not, see <https://www.gnu.org/licenses/>.
+//
 #ifndef CLOSEDORBITFINDER_H
 #define CLOSEDORBITFINDER_H
 
@@ -37,7 +51,6 @@
 
 extern Inform *gmsg;
 
-/// Finds a closed orbit of a cyclotron for a given energy
 template<typename Value_type, typename Size_type, class Stepper>
 class ClosedOrbitFinder
 {

src/Distribution/Harmonics.h

-/**
- * @file Harmonics.h
- * This class computes the cyclotron map based on harmonics.
- * All functions are copied and translated to C++ from the original program inj2_ana.c of Dr. C. Baumgarten.
- *
- * @author Matthias Frey
- * @version 1.0
- */
-
+//
+// Class Harmonics
+//   This class computes the cyclotron map based on harmonics.
+//   All functions are copied and translated to C++ from the original program inj2_ana.c of Dr. C. Baumgarten.
+//
+// Copyright (c) 2014 - 2015, Christian Baumgarten, Paul Scherrer Institut, Villigen PSI, Switzerland
+//                            Matthias Frey, ETH Zürich
+// All rights reserved
+//
+// This file is part of OPAL.
+//
+// OPAL is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// You should have received a copy of the GNU General Public License
+// along with OPAL. If not, see <https://www.gnu.org/licenses/>.
+//
 #ifndef HARMONICS_H
 #define HARMONICS_H
 

src/Distribution/matrix_vector_operation.h

-/**
- * @file matrix_vector_operation.h
- * This file provides additional functions for the matrix classes of uBLAS that is part of the
- * BOOST library (http://www.boost.org/).
- *
- * @author Matthias Frey
- * @version 1.0
- */
+//
+// File with Boost uBLAS extensions
+//   This file provides additional functions for the matrix classes
+//   of uBLAS that is part of the Boost library (http://www.boost.org/).
+//
+// Copyright (c) 2014, Matthias Frey, ETH Zürich
+// All rights reserved
+//
+// Implemented as part of the Semester thesis by Matthias Frey
+// "Matched Distributions in Cyclotrons"
+//
+// This file is part of OPAL.
+//
+// OPAL is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 3 of the License, or
+// (at your option) any later version.
+//
+// You should have received a copy of the GNU General Public License
+// along with OPAL. If not, see <https://www.gnu.org/licenses/>.
+//
 
 #ifndef MATRIX_OPERATION_H
 #define MATRIX_OPERATION_H
@@ -23,7 +36,6 @@
  *  @{
  */
 
-/// @brief Expands the existing functions of the boost library uBLAS (http://www.boost.org/).
 namespace matt_boost {
     namespace ublas = boost::numeric::ublas;