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Commit 611ab378 authored by adelmann's avatar adelmann 🎗
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fix merge requ

parents 4bc3adb1 d5af9f6a
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Showing with 1464 additions and 312 deletions
CMakeLists.txt
View file @ 611ab378
cmake_minimum_required (VERSION 3.1)
project (OPAL VERSION 1.9.0)
project (OPAL VERSION 2.0.0)
set (PROJECT_BUGREPORT opal@lists.psi.ch)
string (REGEX REPLACE "\\.([0-9])\\." ".0\\1." PACKAGE_VERSION ${PROJECT_VERSION})
......@@ -41,16 +41,20 @@ set (CMAKE_CXX_STANDARD 11)
set (CMAKE_CXX_STANDARD_REQUIRED ON)
set (CMAKE_CXX_EXTENSIONS OFF)
add_compile_options (-Wall)
add_definitions (-DIPPL_LINUX -DIPPL_STRINGSTREAM)
add_definitions (-DIPPL_MPI -DMPICH_SKIP_MPICXX -DIPPL_DONT_POOL -DIPPL_USE_XDIV_RNG -DPETE_BITWISE_COPY -DIPPL_HAS_TEMPLATED_COMPLEX -DIPPL_USE_PARTIAL_SPECIALIZATION -Drestrict=__restrict__ -DNOCTAssert)
add_definitions (-DIPPL_MPI -DMPICH_SKIP_MPICXX -DIPPL_DONT_POOL)
add_definitions (-DIPPL_USE_XDIV_RNG -DPETE_BITWISE_COPY)
add_definitions (-DIPPL_HAS_TEMPLATED_COMPLEX)
add_definitions (-DIPPL_USE_PARTIAL_SPECIALIZATION)
add_definitions ( -Drestrict=__restrict__ -DNOCTAssert)
add_compile_options (-ftemplate-depth=1024 -funroll-loops -fstrict-aliasing)
add_compile_options (-Wall)
add_compile_options (-funroll-loops -fstrict-aliasing)
# compiler dependent flags
message ("The underlying C++ compiler ID is: ${CMAKE_CXX_COMPILER_ID}")
if ( ${CMAKE_CXX_COMPILER_ID} STREQUAL "Intel" )
add_compile_options ("-diag-disable 383")
add_compile_options ("-diag-disable 383")
add_compile_options ("-diag-disable 981")
if (ENABLE_OpenMP)
add_compile_options (-openmp)
......@@ -160,7 +164,7 @@ IF (ENABLE_AMR)
message ("Found AMReX libraries: ${AMREX_LIBRARIES}")
message ("Found AMReX Fortran links: ${AMREX_EXTRA_Fortran_LINK_LINE}")
echo_amrex_config_options()
add_definitions(${AMREX_DEFINES})
add_definitions(-DENABLE_AMR)
add_compile_options (-Wno-unused-variable -Wno-unused-but-set-variable -Wno-maybe-uninitialized)
......@@ -176,7 +180,7 @@ if (ENABLE_SAAMG_SOLVER OR ENABLE_AMR_MG_SOLVER)
# Trilinos. Host specific should be avoided in almost any case.
message ("Enable SAAMG_SOLVER: " ${ENABLE_SAAMG_SOLVER})
message ("Enable AMR_MG_SOLVER: " ${ENABLE_AMR_MG_SOLVER})
find_package (Trilinos REQUIRED HINTS $ENV{TRILINOS_PREFIX} $ENV{TRILINOS_DIR} $ENV{TRILINOS})
message ("Found Trilinos: ${Trilinos_DIR}")
......@@ -265,4 +269,4 @@ install (
# mode:cmake
# cmake-tab-width: 4
# indent-tabs-mode:nil
# End:
# End:
\ No newline at end of file
LICENSES/GSL 0 → 100644
View file @ 611ab378
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LICENSES/H5hut 0 → 100644
View file @ 611ab378
*** Copyright Notice ***
H5hut Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
If you have questions about your rights to use or distribute this
software, please contact Berkeley Lab's Technology Transfer Department
at TTD@lbl.gov referring to "H5Part (LBNL Ref CR-2255)"
NOTICE. This software was developed under partial funding from the U.S.
Department of Energy. As such, the U.S. Government has been granted for
itself and others acting on its behalf a paid-up, nonexclusive,
irrevocable, worldwide license in the Software to reproduce, prepare
derivative works, and perform publicly and display publicly. Beginning
five (5) years after the date permission to assert copyright is obtained
from the U.S. Department of Energy, and subject to any subsequent five
(5) year renewals, the U.S. Government is granted for itself and others
acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide
license in the Software to reproduce, prepare derivative works,
distribute copies to the public, perform publicly and display publicly,
and to permit others to do so.
*** License agreement ***
H5hut Copyright (c) 2006-2016, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
(1) Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
(2) Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
(3) Neither the name of the University of California, Lawrence Berkeley
National Laboratory, U.S. Dept. of Energy, Paul Scherrer Institut
(Switzerland) nor the names of its contributors may be used to endorse
or promote products derived from this software without specific prior
written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
You are under no obligation whatsoever to provide any bug fixes,
patches, or upgrades to the features, functionality or performance of
the source code ("Enhancements") to anyone; however, if you choose to
make your Enhancements available either publicly, or directly to
Lawrence Berkeley National Laboratory, without imposing a separate
written license agreement for such Enhancements, then you hereby grant
the following license: a non-exclusive, royalty-free perpetual license
to install, use, modify, prepare derivative works, incorporate into
other computer software, distribute, and sublicense such enhancements or
derivative works thereof, in binary and source code form.
LICENSES/HDF5 0 → 100644
View file @ 611ab378
Copyright Notice and License Terms for
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
-----------------------------------------------------------------------------
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 2006, The HDF Group.
NCSA HDF5 (Hierarchical Data Format 5) Software Library and Utilities
Copyright (c) 1998-2006, The Board of Trustees of the University of Illinois.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted for any purpose (including commercial purposes)
provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions, and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions, and the following disclaimer in the documentation
and/or materials provided with the distribution.
3. In addition, redistributions of modified forms of the source or binary
code must carry prominent notices stating that the original code was
changed and the date of the change.
4. All publications or advertising materials mentioning features or use of
this software are asked, but not required, to acknowledge that it was
developed by The HDF Group and by the National Center for Supercomputing
Applications at the University of Illinois at Urbana-Champaign and
credit the contributors.
5. Neither the name of The HDF Group, the name of the University, nor the
name of any Contributor may be used to endorse or promote products derived
from this software without specific prior written permission from
The HDF Group, the University, or the Contributor, respectively.
DISCLAIMER:
THIS SOFTWARE IS PROVIDED BY THE HDF GROUP AND THE CONTRIBUTORS
"AS IS" WITH NO WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED. In no
event shall The HDF Group or the Contributors be liable for any damages
suffered by the users arising out of the use of this software, even if
advised of the possibility of such damage.
-----------------------------------------------------------------------------
-----------------------------------------------------------------------------
Limited portions of HDF5 were developed by Lawrence Berkeley National
Laboratory (LBNL). LBNL's Copyright Notice and Licensing Terms can be
found here: COPYING_LBNL_HDF5 file in this directory or at
https://support.hdfgroup.org/ftp/HDF5/releases/COPYING_LBNL_HDF5.
-----------------------------------------------------------------------------
-----------------------------------------------------------------------------
Contributors: National Center for Supercomputing Applications (NCSA) at
the University of Illinois, Fortner Software, Unidata Program Center (netCDF),
The Independent JPEG Group (JPEG), Jean-loup Gailly and Mark Adler (gzip),
and Digital Equipment Corporation (DEC).
-----------------------------------------------------------------------------
Portions of HDF5 were developed with support from the Lawrence Berkeley
National Laboratory (LBNL) and the United States Department of Energy
under Prime Contract No. DE-AC02-05CH11231.
-----------------------------------------------------------------------------
Portions of HDF5 were developed with support from the University of
California, Lawrence Livermore National Laboratory (UC LLNL).
The following statement applies to those portions of the product and must
be retained in any redistribution of source code, binaries, documentation,
and/or accompanying materials:
This work was partially produced at the University of California,
Lawrence Livermore National Laboratory (UC LLNL) under contract
no. W-7405-ENG-48 (Contract 48) between the U.S. Department of Energy
(DOE) and The Regents of the University of California (University)
for the operation of UC LLNL.
DISCLAIMER:
This work was prepared as an account of work sponsored by an agency of
the United States Government. Neither the United States Government nor
the University of California nor any of their employees, makes any
warranty, express or implied, or assumes any liability or responsibility
for the accuracy, completeness, or usefulness of any information,
apparatus, product, or process disclosed, or represents that its use
would not infringe privately- owned rights. Reference herein to any
specific commercial products, process, or service by trade name,
trademark, manufacturer, or otherwise, does not necessarily constitute
or imply its endorsement, recommendation, or favoring by the United
States Government or the University of California. The views and
opinions of authors expressed herein do not necessarily state or reflect
those of the United States Government or the University of California,
and shall not be used for advertising or product endorsement purposes.
-----------------------------------------------------------------------------
HDF5 is available with the SZIP compression library but SZIP is not part
of HDF5 and has separate copyright and license terms. See “Szip Compression
in HDF Products” (https://support.hdfgroup.org/doc_resource/SZIP/) for
further details.
-----------------------------------------------------------------------------
LICENSES/HDF5_LBNL 0 → 100644
View file @ 611ab378
Copyright Notice and License Terms for
HDF5 (Hierarchical Data Format 5) Software Library and Utilities
-----------------------------------------------------------------------------
HDF5 (Hierarchical Data Format 5)
Copyright (c) 2016, The Regents of the University of California, through
Lawrence Berkeley National Laboratory (subject to receipt of any required
approvals from the U.S. Dept. of Energy).
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions, and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions, and the following disclaimer in the documentation
and/or materials provided with the distribution.
3. Neither the name of the University of California, Lawrence Berkeley
National Laboratory, U.S. Dept. of Energy nor the names of its contributors
may be used to endorse or promote products derived from this software without
specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
THE POSSIBILITY OF SUCH DAMAGE.
You are under no obligation whatsoever to provide any bug fixes, patches,
or upgrades to the features, functionality or performance of the source
code ("Enhancements") to anyone; however, if you choose to make your
Enhancements available either publicly, or directly to Lawrence Berkeley
National Laboratory, without imposing a separate written license agreement
for such Enhancements, then you hereby grant the following license:
a non-exclusive, royalty-free perpetual license to install, use, modify,
prepare derivative works, incorporate into other computer software,
distribute, and sublicense such enhancements or derivative works thereof,
in binary and source code form.
LICENSES/OpenBLAS 0 → 100644
View file @ 611ab378
Copyright (c) 2011-2014, The OpenBLAS Project
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in
the documentation and/or other materials provided with the
distribution.
3. Neither the name of the OpenBLAS project nor the names of
its contributors may be used to endorse or promote products
derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE
USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
LICENSES/ParMETIS 0 → 100644
View file @ 611ab378
Copyright & License Notice
--------------------------
The ParMETIS package is copyrighted by the Regents of the
University of Minnesota. It can be freely used for educational and
research purposes by non-profit institutions and US government
agencies only. Other organizations are allowed to use ParMETIS
only for evaluation purposes, and any further uses will require prior
approval. The software may not be sold or redistributed without prior
approval. One may make copies of the software for their use provided
that the copies, are not sold or distributed, are used under the same
terms and conditions.
As unestablished research software, this code is provided on an
``as is'' basis without warranty of any kind, either expressed or
implied. The downloading, or executing any part of this software
constitutes an implicit agreement to these terms. These terms and
conditions are subject to change at any time without prior notice.
LICENSES/Trilinos 0 → 100644
View file @ 611ab378
The Trilinos project is a collection of open-source packages licensed
individually under multiple open-source licenses. Licensing terms are
available at the Trilinos website:
https://trilinos.org/download/license/
For information about the software license for a particular package,
see package-specific documentation.
LICENSES/boost 0 → 100644
View file @ 611ab378
Boost Software License - Version 1.0 - August 17th, 2003
Permission is hereby granted, free of charge, to any person or organization
obtaining a copy of the software and accompanying documentation covered by
this license (the "Software") to use, reproduce, display, distribute,
execute, and transmit the Software, and to prepare derivative works of the
Software, and to permit third-parties to whom the Software is furnished to
do so, all subject to the following:
The copyright notices in the Software and this entire statement, including
the above license grant, this restriction and the following disclaimer,
must be included in all copies of the Software, in whole or in part, and
all derivative works of the Software, unless such copies or derivative
works are solely in the form of machine-executable object code generated by
a source language processor.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
DEALINGS IN THE SOFTWARE.
LICENSES/license.AMReX 0 → 100644
View file @ 611ab378
AMReX Copyright (c) 2017, The Regents of the University of California,
through Lawrence Berkeley National Laboratory and the Alliance for
Sustainable Energy, LLC., through National Renewable Energy Laboratory
(subject to receipt of any required approvals from the U.S. Dept. of
Energy). All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
(1) Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
(2) Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
(3) Neither the name of the University of California, Lawrence
Berkeley National Laboratory, Alliance for Sustainable Energy, LLC.,
National Renewable Energy Laboratory, U.S. Dept. of Energy nor the
names of its contributors may be used to endorse or promote products
derived from this software without specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
You are under no obligation whatsoever to provide any bug fixes,
patches, or upgrades to the features, functionality or performance of
the source code ("Enhancements") to anyone; however, if you choose to
make your Enhancements available either publicly, or directly to
Lawrence Berkeley National Laboratory or National Renewable Energy
Laboratory, without imposing a separate written license agreement for
such Enhancements, then you hereby grant the following license: a
non-exclusive, royalty-free perpetual license to install, use, modify,
prepare derivative works, incorporate into other computer software,
distribute, and sublicense such enhancements or derivative works
thereof, in binary and source code form.
LICENSES/open-mpi 0 → 100644
View file @ 611ab378
Most files in this release are marked with the copyrights of the
organizations who have edited them. The copyrights below are in no
particular order and generally reflect members of the Open MPI core
team who have contributed code to this release. The copyrights for
code used under license from other parties are included in the
corresponding files.
Copyright (c) 2004-2010 The Trustees of Indiana University and Indiana
University Research and Technology
Corporation. All rights reserved.
Copyright (c) 2004-2010 The University of Tennessee and The University
of Tennessee Research Foundation. All rights
reserved.
Copyright (c) 2004-2010 High Performance Computing Center Stuttgart,
University of Stuttgart. All rights reserved.
Copyright (c) 2004-2008 The Regents of the University of California.
All rights reserved.
Copyright (c) 2006-2010 Los Alamos National Security, LLC. All rights
reserved.
Copyright (c) 2006-2010 Cisco Systems, Inc. All rights reserved.
Copyright (c) 2006-2010 Voltaire, Inc. All rights reserved.
Copyright (c) 2006-2011 Sandia National Laboratories. All rights reserved.
Copyright (c) 2006-2010 Sun Microsystems, Inc. All rights reserved.
Use is subject to license terms.
Copyright (c) 2006-2010 The University of Houston. All rights reserved.
Copyright (c) 2006-2009 Myricom, Inc. All rights reserved.
Copyright (c) 2007-2008 UT-Battelle, LLC. All rights reserved.
Copyright (c) 2007-2010 IBM Corporation. All rights reserved.
Copyright (c) 1998-2005 Forschungszentrum Juelich, Juelich Supercomputing
Centre, Federal Republic of Germany
Copyright (c) 2005-2008 ZIH, TU Dresden, Federal Republic of Germany
Copyright (c) 2007 Evergrid, Inc. All rights reserved.
Copyright (c) 2008 Chelsio, Inc. All rights reserved.
Copyright (c) 2008-2009 Institut National de Recherche en
Informatique. All rights reserved.
Copyright (c) 2007 Lawrence Livermore National Security, LLC.
All rights reserved.
Copyright (c) 2007-2009 Mellanox Technologies. All rights reserved.
Copyright (c) 2006-2010 QLogic Corporation. All rights reserved.
Copyright (c) 2008-2010 Oak Ridge National Labs. All rights reserved.
Copyright (c) 2006-2010 Oracle and/or its affiliates. All rights reserved.
Copyright (c) 2009 Bull SAS. All rights reserved.
Copyright (c) 2010 ARM ltd. All rights reserved.
Copyright (c) 2010-2011 Alex Brick <bricka@ccs.neu.edu>. All rights reserved.
Copyright (c) 2012 The University of Wisconsin-La Crosse. All rights
reserved.
Copyright (c) 2013-2016 Intel, Inc. All rights reserved.
Copyright (c) 2011-2014 NVIDIA Corporation. All rights reserved.
Copyright (c) 2017 Amazon.com, Inc. or its affiliates. All Rights
reserved.
$COPYRIGHT$
Additional copyrights may follow
$HEADER$
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are
met:
- Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
- Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer listed
in this license in the documentation and/or other materials
provided with the distribution.
- Neither the name of the copyright holders nor the names of its
contributors may be used to endorse or promote products derived from
this software without specific prior written permission.
The copyright holders provide no reassurances that the source code
provided does not infringe any patent, copyright, or any other
intellectual property rights of third parties. The copyright holders
disclaim any liability to any recipient for claims brought against
recipient by any third party for infringement of that parties
intellectual property rights.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
README.md
View file @ 611ab378
This is OPAL >= 1.9.9. Be aware of the fact that the documentation is not
anymore a separate project.
# This is OPAL 2.
The documentation is in the [Wiki](https://gitlab.psi.ch/OPAL/src/wikis/home).
The documentation has been moved to the [Wiki](https://gitlab.psi.ch/OPAL/src/wikis/home).
ippl/INSTALL deleted 100644 → 0
View file @ 4bc3adb1
###########################################################################
#
# The IPPL Framework
#
# Visit http://amas.web.psi.ch/tools/IPPL/index.html
#
###########################################################################
/***************************************************************************
* $RCSfile: INSTALL,v $ $Author: adelmann $
* $Revision: 1.1.1.1 $ $Date: 2003/01/23 07:40:17 $
* IPPL_VERSION_ID: $Id: INSTALL,v 1.1.1.1 2003/01/23 07:40:17 adelmann Exp $
***************************************************************************/
ippl/LICENSE deleted 100644 → 0
View file @ 4bc3adb1
###########################################################################
#
# The IPPL Framework
#
#
# http://amas.web.psi.ch/tools/IPPL/index.html
#
###########################################################################
<License info here>
More to come
/***************************************************************************
* $RCSfile: LICENSE,v $ $Author: adelmann $
* $Revision: 1.1.1.1 $ $Date: 2003/01/23 07:40:17 $
* IPPL_VERSION_ID: $Id: LICENSE,v 1.1.1.1 2003/01/23 07:40:17 adelmann Exp $
***************************************************************************/
ippl/README deleted 100644 → 0
View file @ 4bc3adb1
###########################################################################
#
# The IPPL Framework
#
# http://amas.web.psi.ch/tools/IPPL/index.html
#
###########################################################################
This is the main directory for version 1.0 of the IPPL FrameWork.
The FrameWork makes heavy use of template, so, although it is
necessary to first form libippl.a.
The IPPL library is compiled using cmake, details can be found at
In order to compile the FrameWork, you need to set two environment
variables: IPPL_ROOT.
Please report bugs to andreas.adelmann@psi.ch
/***************************************************************************
* $RCSfile: README,v $ $Author: adelmann $
* $Revision: 1.1.1.1 $ $Date: 2003/01/23 07:40:17 $
* IPPL_VERSION_ID: $Id: README,v 1.1.1.1 2003/01/23 07:40:17 adelmann Exp $
***************************************************************************/
ippl/test/FFT/CMakeLists.txt
View file @ 611ab378
FILE (RELATIVE_PATH _relPath "${CMAKE_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}")
MESSAGE (STATUS "Adding test FFT found in ${_relPath}")
MESSAGE (STATUS "MPI COMPILER ${MPI_UNDERLYING_COMPILER}")
set (CMAKE_CXX_FLAGS
"-O3 ${CMAKE_CXX_FLAGS}"
)
file (RELATIVE_PATH _relPath "${CMAKE_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}")
message ("Adding test FFT found in ${_relPath}")
message ("MPI CXX compiler: ${MPI_CXX_COMPILER}")
message ("CXX compiler: ${CMAKE_CXX_COMPILER}")
include_directories (
${CMAKE_SOURCE_DIR}/src
......@@ -16,17 +13,13 @@ link_directories (
${CMAKE_SOURCE_DIR}/src
)
SET (IPPL_LIBS ippl)
IF (ENABLE_DKS)
set (IPPL_LIBS ippl)
if (ENABLE_DKS)
include_directories (${DKS_INCLUDE_DIR})
link_directories (${DKS_LIBRARY_DIR})
#SET (IPPL_LIBS ${IPPL_LIBS} dks)
SET (IPPL_LIBS ${IPPL_LIBS} ${DKS_LIBRARY_DIR}/libdks.a)
ENDIF (ENABLE_DKS)
set (IPPL_LIBS ${IPPL_LIBS} ${DKS_LIBRARY_DIR}/libdks.a)
endif ()
add_executable (TestFFT TestFFT.cpp)
......@@ -35,11 +28,10 @@ add_executable (TestRC TestRC.cpp)
#add_executable (TestRCMIC TestRCMIC.cpp)
add_executable (TestFFTCos TestFFTCos.cpp)
target_link_libraries (TestFFT ${IPPL_LIBS})
target_link_libraries (TestRC ${IPPL_LIBS})
#target_link_libraries (TestRCGPU ${IPPL_LIBS})
#target_link_libraries (TestRCMIC ${IPPL_LIBS})
target_link_libraries (TestFFTCos ${IPPL_LIBS})
target_link_libraries (TestFFT ${IPPL_LIBS} ${MPI_CXX_LIBRARIES})
target_link_libraries (TestRC ${IPPL_LIBS} ${MPI_CXX_LIBRARIES})
#target_link_libraries (TestRCGPU ${IPPL_LIBS} ${MPI_CXX_LIBRARIES})
#target_link_libraries (TestRCMIC ${IPPL_LIBS} ${MPI_CXX_LIBRARIES})
target_link_libraries (TestFFTCos ${IPPL_LIBS} ${MPI_CXX_LIBRARIES})
ippl/test/particle/CMakeLists.txt
View file @ 611ab378
......@@ -38,7 +38,13 @@ set_source_files_properties(SOURCE PIC3d.cpp p3m3d.cpp
#target_link_libraries (PIC3d ${IPPL_LIBS})
add_executable (p3m3dHeating p3m3dHeating.cpp)
target_link_libraries (p3m3dHeating ${IPPL_LIBS} ${H5Hut_LIBRARY} ${HDF5_LIBRARIES} z ${CMAKE_DL_LIBS})
target_link_libraries (
p3m3dHeating
${IPPL_LIBS}
${H5Hut_LIBRARY}
${HDF5_LIBRARIES}
${MPI_CXX_LIBRARIES}
)
#add_executable (p3m3d p3m3d.cpp)
#target_link_libraries (p3m3d ${IPPL_LIBS})
......@@ -50,10 +56,18 @@ target_link_libraries (p3m3dHeating ${IPPL_LIBS} ${H5Hut_LIBRARY} ${HDF5_LIBRARI
#target_link_libraries (p3m3dTwoStream ${IPPL_LIBS})
add_executable (p3m3dTwoStreamParallel p3m3dTwoStreamParallel.cpp)
target_link_libraries (p3m3dTwoStreamParallel ${IPPL_LIBS})
target_link_libraries (
p3m3dTwoStreamParallel
${IPPL_LIBS}
${MPI_CXX_LIBRARIES}
)
add_executable (p3m3dRegressionTests p3m3dRegressionTests.cpp)
target_link_libraries (p3m3dRegressionTests ${IPPL_LIBS})
target_link_libraries (
p3m3dRegressionTests
${IPPL_LIBS}
${MPI_CXX_LIBRARIES}
)
#add_executable (p3m3dMicrobunching p3m3dMicrobunching.cpp)
#target_link_libraries (p3m3dMicrobunching ${IPPL_LIBS} ${H5Hut_LIBRARY} ${HDF5_LIBRARIES} z ${CMAKE_DL_LIBS})
......
ippl/test/toyfdtf/CMakeLists.txt
View file @ 611ab378
FILE (RELATIVE_PATH _relPath "${CMAKE_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}")
MESSAGE (STATUS "Adding test ippltoyfdtd found in ${_relPath}")
file (RELATIVE_PATH _relPath "${CMAKE_SOURCE_DIR}" "${CMAKE_CURRENT_SOURCE_DIR}")
message ("Adding test ippltoyfdtd found in ${_relPath}")
set (IPPLTOYFDTD_SRCS
ToyFDTD-DataSink/DataSink.cpp
......@@ -15,17 +15,20 @@ link_directories (
${CMAKE_SOURCE_DIR}/src
)
SET (IPPL_LIBS ippl)
set (IPPL_LIBS ippl)
IF (ENABLE_DKS)
if (ENABLE_DKS)
include_directories (${DKS_INCLUDE_DIR})
link_directories (${DKS_LIBRARY_DIR})
#SET (IPPL_LIBS ${IPPL_LIBS} dks)
SET (IPPL_LIBS ${IPPL_LIBS} ${DKS_LIBRARY_DIR}/libdks.a)
set (IPPL_LIBS ${IPPL_LIBS} ${DKS_LIBRARY_DIR}/libdks.a)
ENDIF (ENABLE_DKS)
endif ()
add_executable (ipplToyFDTD ${IPPLTOYFDTD_SRCS} ToyFDTD-DataSink/ipplToyFDTD2.cpp)
target_link_libraries (ipplToyFDTD ${IPPL_LIBS})
target_link_libraries (
ipplToyFDTD
${IPPL_LIBS}
${MPI_CXX_LIBRARIES}
)
optimizer/extlib/nsga2/nsga2_functions.c
View file @ 611ab378
......@@ -66,7 +66,14 @@ void initialize(char *paramfile, char *filenamebase)
FILE *fp;
int result;
char str[CFG_ENTRY_LENGTH];
#if (NDEBUG)
/*
'result' is used in assert() only. Without below statement
we get a warning if we compile with NDEBUG (assert() disabled)
*/
(void)result;