add optimiser

Doxyfile

@@ -38,27 +38,27 @@ PROJECT_NAME           = "OPAL (Object Oriented Parallel Accelerator Library)"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = "1.5.0"
+PROJECT_NUMBER         = "2.0.0"
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
 # quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          =
+PROJECT_BRIEF          = "OPAL"
 
 # With the PROJECT_LOGO tag one can specify an logo or icon that is included in
 # the documentation. The maximum height of the logo should not exceed 55 pixels
 # and the maximum width should not exceed 200 pixels. Doxygen will copy the logo
 # to the output directory.
 
-PROJECT_LOGO           =
+PROJECT_LOGO           = 
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
 # entered, it will be relative to the location where doxygen was started. If
 # left blank the current directory will be used.
 
-OUTPUT_DIRECTORY       = /afs/psi.ch/project/amas/webhosting/docs/opal/
+OUTPUT_DIRECTORY       = ./doc
 
 # If the CREATE_SUBDIRS tag is set to YES, then doxygen will create 4096 sub-
 # directories (in 2 levels) under the output directory of each output format and
@@ -766,7 +766,8 @@ WARN_LOGFILE           =
 
 INPUT                  = ./src \
                          ./src/Classic \
-                         ./ippl/src
+                         ./ippl/src \
+			 ./opt-pilot
 
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
@@ -792,7 +793,9 @@ FILE_PATTERNS          = *.c \
                          *.h \
                          *.hh \
 			 *.H \
-			 *.f90
+			 *.f90 \
+			 *.hpp
+			 
 
 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.
@@ -1959,8 +1962,8 @@ INCLUDE_FILE_PATTERNS  =
 # recursively expanded use the := operator instead of the = operator.
 # This tag requires that the tag ENABLE_PREPROCESSING is set to YES.
 
-PREDEFINED             = HAVE_AMR_SOLVER=1 \
-                         HAVE_AMR_SOLVER=1
+PREDEFINED             = ENABLE_AMR=1 \
+                         ENABLE_AMR=1
 
 # If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then this
 # tag can be used to specify a list of macro names that should be expanded. The