repo reorganization

CMakeLists.txt

+cmake_minimum_required(VERSION 2.6)
+
+set (CMAKE_CXX_FLAGS_RELEASE "-O3")
+set (CMAKE_CXX_FLAGS_DEBUG  "-g -O2")
+#find_package (MPI REQUIRED)
+set (CMAKE_CXX_COMPILER ${MPI_COMPILER})
+
+project(OPAL)
+set (OPAL_VERSION_MAJOR 1)
+set (OPAL_VERSION_MINOR 1.9)
+
+#set(CMAKE_BUILD_TYPE Debug)
+
+option (ENABLE_ML_SOLVER "Enable iteartive SA-AMG-PCG self field solver" OFF)
+
+option (DBG_SCALARFIELD "Enable dump of scalar field rho_m" OFF)
+option (DBG_STENCIL "Dump stencil of iterative solver in matlab format" OFF)
+option (BUILD_LIBOPAL "Enable building the OPAL library" OFF)
+
+
+set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/CMakeModules")
+find_package (IPPL REQUIRED
+               PATHS /usr/local/include /usr/include $ENV{IPPL_PREFIX})
+message("Found IPPL library dir: ${IPPL_LIBRARY_DIR}")
+message("Found IPPL include dir: ${IPPL_INCLUDE_DIR}")
+
+find_package (H5Hut REQUIRED)
+find_package (HDF5 REQUIRED)
+find_package (GSL REQUIRED)
+
+if (DBG_SCALARFIELD)	
+   MESSAGE("\nWrite scalar rho_m field is enabled ")
+   set (CMAKE_CXX_FLAGS_RELEASE "-D DBG_SCALARFIELD") 
+endif (DBG_SCALARFIELD)
+
+if (DBG_STENCIL)
+   MESSAGE("\nWrite stencil is enabled ")
+   set (CMAKE_CXX_FLAGS_RELEASE "-D DBG_STENCIL") 
+endif (DBG_STENCIL)
+
+if (BUILD_LIBOPAL)	
+   MESSAGE("\nBuilding OPAL library")
+endif (BUILD_LIBOPAL)
+
+
+if (ENABLE_ML_SOLVER)
+    # Get Trilinos as one entity
+    find_package (Trilinos PATHS $ENV{TRILINOS_INCLUDE_PATH})
+
+    IF(NOT Trilinos_FOUND)
+        MESSAGE (FATAL_ERROR "Could not find Trilinos!")
+    ENDIF()
+    # Echo trilinos build info just for fun
+    MESSAGE("\nFound Trilinos!  Here are the details: ")
+    MESSAGE("   Trilinos_DIR = ${Trilinos_DIR}")
+    MESSAGE("   Trilinos_VERSION = ${Trilinos_VERSION}")
+    MESSAGE("   Trilinos_PACKAGE_LIST = ${Trilinos_PACKAGE_LIST}")
+    MESSAGE("   Trilinos_LIBRARIES = ${Trilinos_LIBRARIES}")
+    MESSAGE("   Trilinos_INCLUDE_DIRS = ${Trilinos_INCLUDE_DIRS}")
+    MESSAGE("   Trilinos_LIBRARY_DIRS = ${Trilinos_LIBRARY_DIRS}")
+    MESSAGE("   Trilinos_TPL_LIST = ${Trilinos_TPL_LIST}")
+    MESSAGE("   Trilinos_TPL_INCLUDE_DIRS = ${Trilinos_TPL_INCLUDE_DIRS}")
+    MESSAGE("   Trilinos_TPL_LIBRARIES = ${Trilinos_TPL_LIBRARIES}")
+    MESSAGE("   Trilinos_TPL_LIBRARY_DIRS = ${Trilinos_TPL_LIBRARY_DIRS}")
+    MESSAGE("   Trilinos_BUILD_SHARED_LIBS = ${Trilinos_BUILD_SHARED_LIBS}")
+    MESSAGE("End of Trilinos details\n")
+
+    # Make sure to use same compilers and flags as Trilinos
+    #SET(CMAKE_C_COMPILER ${Trilinos_C_COMPILER} )
+    #SET(CMAKE_CXX_COMPILER ${Trilinos_CXX_COMPILER} )
+    #SET(CMAKE_Fortran_COMPILER ${Trilinos_Fortran_COMPILER} )
+
+    #SET(CMAKE_CXX_FLAGS  "${Trilinos_CXX_COMPILER_FLAGS} ${CMAKE_CXX_FLAGS}")
+    #SET(CMAKE_C_FLAGS  "${Trilinos_C_COMPILER_FLAGS} ${CMAKE_C_FLAGS}")
+    #SET(CMAKE_Fortran_FLAGS  "${Trilinos_Fortran_COMPILER_FLAGS} ${CMAKE_Fortran_FLAGS}")
+    
+endif (ENABLE_ML_SOLVER)
+
+add_subdirectory (classic/5.0/src)
+add_subdirectory (src)

CMakeModules/FindGSL.cmake

+#
+# Find GSL includes and library
+#
+# GSL 
+# It can be found at:
+#     http://amas.web.psi.ch/tools/GSL/index.html
+#
+# GSL_INCLUDE_DIR - where to find ippl.h
+# GSL_LIBRARY     - qualified libraries to link against.
+# GSL_FOUND       - do not attempt to use if "no" or undefined.
+
+FIND_PATH(GSL_INCLUDE_DIR gsl/gsl_fft.h
+  PATHS $ENV{GSL_PREFIX}/include
+  NO_DEFAULT_PATH
+)
+FIND_PATH(GSL_INCLUDE_DIR gsl/gsl_fft.h
+  /usr/include
+  /usr/local/include
+)
+
+FIND_LIBRARY(GSL_LIBRARY gsl
+  PATHS $ENV{GSL_PREFIX}/lib
+  NO_DEFAULT_PATH
+)
+FIND_LIBRARY(GSL_LIBRARY gsl
+  /usr/lib
+  /usr/local/lib
+)
+FIND_LIBRARY(GSL_LIBRARY_CBLAS gslcblas 
+  PATHS $ENV{GSL_PREFIX}/lib
+  NO_DEFAULT_PATH
+)
+FIND_LIBRARY(GSL_LIBRARY_CBLAS gslcblas 
+  /usr/lib
+  /usr/local/lib
+)
+
+set( GSL_LIBRARY
+    ${GSL_LIBRARY}
+    ${GSL_LIBRARY_CBLAS}
+)
+
+IF(GSL_INCLUDE_DIR AND GSL_LIBRARY)
+    SET( GSL_FOUND "YES" )
+ENDIF(GSL_INCLUDE_DIR AND GSL_LIBRARY)
+
+IF (GSL_FOUND)
+   IF (NOT GSL_FIND_QUIETLY)
+      MESSAGE(STATUS "Found GSL: ${GSL_LIBRARY}")
+   ENDIF (NOT GSL_FIND_QUIETLY)
+ELSE (GSL_FOUND)
+   IF (GSL_FIND_REQUIRED)
+      MESSAGE(FATAL_ERROR "Could not find GSL!")
+   ENDIF (GSL_FIND_REQUIRED)
+ENDIF (GSL_FOUND)

CMakeModules/FindH5Hut.cmake

+#
+# Find H5hut includes and library
+#
+# H5Hut
+# It can be found at:
+#     http://amas.web.psi.ch/tools/H5hut/index.html
+#
+# H5Hut_INCLUDE_DIR - where to find H5hut.h
+# H5Hut_LIBRARY     - qualified libraries to link against.
+# H5Hut_FOUND       - do not attempt to use if "no" or undefined.
+
+FIND_PATH(H5Hut_INCLUDE_DIR H5hut.h
+  PATHS $ENV{H5hut}/src $ENV{H5hut}/include
+  NO_DEFAULT_PATH
+)
+
+FIND_PATH(H5Hut_INCLUDE_DIR H5hut.h
+  /usr/local/include
+  /usr/include
+)
+
+FIND_LIBRARY(H5Hut_LIBRARY H5hut
+  PATHS $ENV{H5hut}/lib
+  NO_DEFAULT_PATH
+)
+
+FIND_LIBRARY(H5Hut_LIBRARY H5hut
+  /usr/local/lib
+  /usr/lib
+)
+
+FIND_LIBRARY(H5Hut_LIBRARY_C H5hutC
+  PATHS $ENV{H5hut}/lib
+  NO_DEFAULT_PATH
+)
+
+FIND_LIBRARY(H5Hut_LIBRARY_C H5hutC
+  /usr/local/lib
+  /usr/lib
+)
+
+IF(H5Hut_INCLUDE_DIR AND H5Hut_LIBRARY)
+    SET( H5Hut_FOUND "YES" )
+ENDIF(H5Hut_INCLUDE_DIR AND H5Hut_LIBRARY)
+
+IF (H5Hut_FOUND)
+   IF (NOT H5Hut_FIND_QUIETLY)
+      MESSAGE(STATUS "Found H5Hut: ${H5Hut_LIBRARY}; ${H5Hut_LIBRARY_C}")
+   ENDIF (NOT H5Hut_FIND_QUIETLY)
+ELSE (H5Hut_FOUND)
+   IF (H5Hut_FIND_REQUIRED)
+      MESSAGE(FATAL_ERROR "Could not find H5Hut!")
+   ENDIF (H5Hut_FIND_REQUIRED)
+ENDIF (H5Hut_FOUND)

CMakeModules/FindH5Part.cmake

+#
+# Find H5Part includes and library
+#
+# H5Part 
+# It can be found at:
+#     http://amas.web.psi.ch/tools/H5Part/index.html
+#
+# H5Part_INCLUDE_DIR - where to find ippl.h
+# H5Part_LIBRARY     - qualified libraries to link against.
+# H5Part_FOUND       - do not attempt to use if "no" or undefined.
+
+FIND_PATH(H5Part_INCLUDE_DIR H5Part.h
+  PATHS  $ENV{H5Part}/src $ENV{H5Part}/include
+  NO_DEFAULT_PATH
+)
+
+FIND_PATH(H5Part_INCLUDE_DIR H5Part.h
+  /usr/local/include
+  /usr/include
+)
+
+FIND_LIBRARY(H5Part_LIBRARY pH5Part
+  PATHS $ENV{H5Part}/src $ENV{H5Part}/lib
+)
+
+FIND_LIBRARY(H5Part_LIBRARY pH5Part
+  /usr/local/lib
+  /usr/lib
+)
+
+IF(H5Part_INCLUDE_DIR AND H5Part_LIBRARY)
+    SET( H5Part_FOUND "YES" )
+ENDIF(H5Part_INCLUDE_DIR AND H5Part_LIBRARY)
+
+IF (H5Part_FOUND)
+   IF (NOT H5Part_FIND_QUIETLY)
+      MESSAGE(STATUS "Found H5Part: ${H5Part_LIBRARY}")
+   ENDIF (NOT H5Part_FIND_QUIETLY)
+ELSE (H5Part_FOUND)
+   IF (H5Part_FIND_REQUIRED)
+      MESSAGE(FATAL_ERROR "Could not find H5Part!")
+   ENDIF (H5Part_FIND_REQUIRED)
+ENDIF (H5Part_FOUND)

CMakeModules/FindHDF5.cmake

+#
+# Find HDF5 includes and library
+#
+# HDF5 
+# It can be found at:
+#     http://amas.web.psi.ch/tools/HDF5/index.html
+#
+# HDF5_INCLUDE_DIR - where to find hdf5.h
+# HDF5_LIBRARY     - qualified libraries to link against.
+# HDF5_FOUND       - do not attempt to use if "no" or undefined.
+
+SET(CMAKE_FIND_LIBRARY_SUFFIXES .lib .a ${CMAKE_FIND_LIBRARY_SUFFIXES})
+
+FIND_PATH(HDF5_INCLUDE_DIR hdf5.h
+  PATHS $ENV{HDF5_INCLUDE_PATH}
+  NO_DEFAULT_PATH
+)
+
+FIND_PATH(HDF5_INCLUDE_DIR hdf5.h