Opal maps

This MR will implement Map tracking for:

• Quadrupole
• Dipole
• Drifts
• Bends

TODO list:

• Code implementation (@ganz_p): ThickTracker, Hamiltonian, MapAnalyser
• Doxygen documentation (@ganz_p)
• Documentation (@ganz_p)
• Code cleaning (@frey_m)
• Regression tests (@snuverink_j)
• Examples (@ganz_p)
• Jupyter notebook (@ganz_p)
• Use beam line order

Remaining issues:

• Output dumps in local coordinates only
• Dipole until 1st order
• Tune calculation not stable
• Space charge calculations needs to be verified
• Fringe fields for Bends

src/Algorithms/ThickTracker.cpp

 // ------------------------------------------------------------------------
-// $RCSfile: ThickTracker.cpp,v $
-// ------------------------------------------------------------------------
-// $Revision: 1.1.2.1 $
-// ------------------------------------------------------------------------
 // Copyright: see Copyright.readme
 // ------------------------------------------------------------------------
 //
@@ -13,70 +9,20 @@
 //
 // ------------------------------------------------------------------------
 //
-// $Date: 2004/11/12 20:10:11 $
-// $Author: adelmann $
+// $Author: ganz $
 //
 // ------------------------------------------------------------------------
 
 
-/*
-#include <cmath>
-#include <exception>
-#include <functional>
-#include <iostream>
-#include <string>
-#include <vector>
+#include <cfloat>
 #include <fstream>
-*/
-
-
 #include <typeinfo>
-#include <fstream>
-#include "Algorithms/ThickTracker.h"
-
-#include <cfloat>
 
+#include "Algorithms/ThickTracker.h"
 
-#include "BeamlineGeometry/Euclid3D.h"
-#include "BeamlineGeometry/PlanarArcGeometry.h"
-#include "BeamlineGeometry/RBendGeometry.h"
 #include "Beamlines/Beamline.h"
 #include "Beamlines/FlaggedBeamline.h"
 
-#include "Fields/BMultipoleField.h"
-#include "Classic/FixedAlgebra/FTps.h"
-#include "Classic/FixedAlgebra/FTpsMath.h"
-#include "Classic/FixedAlgebra/FVps.h"
-#include "Classic/FixedAlgebra/FDoubleEigen.h"
-
-
-#include "AbsBeamline/CCollimator.h"
-#include "AbsBeamline/Corrector.h"
-#include "AbsBeamline/Diagnostic.h"
-#include "AbsBeamline/Degrader.h"
-#include "AbsBeamline/Drift.h"
-#include "AbsBeamline/FlexibleCollimator.h"
-#include "AbsBeamline/ElementBase.h"
-#include "AbsBeamline/Lambertson.h"
-#include "AbsBeamline/Marker.h"
-#include "AbsBeamline/Monitor.h"
-#include "AbsBeamline/Multipole.h"
-#include "AbsBeamline/Probe.h"
-#include "AbsBeamline/RBend.h"
-#include "AbsBeamline/RBend3D.h"
-#include "AbsBeamline/RFCavity.h"
-#include "AbsBeamline/TravelingWave.h"
-#include "AbsBeamline/RFQuadrupole.h"
-#include "AbsBeamline/SBend.h"
-#include "AbsBeamline/Separator.h"
-#include "AbsBeamline/Septum.h"
-#include "AbsBeamline/Solenoid.h"
-#include "AbsBeamline/ParallelPlate.h"
-#include "AbsBeamline/CyclotronValley.h"
-
-#include "Classic/Fields/BSingleMultipoleField.h"
-
-
 #include "Classic/Algorithms/PartData.h"  //for the beam reference
 
 #include "Utilities/Options.h"
@@ -85,16 +31,8 @@
 
 #include "Physics/Physics.h"
 
-#include "Elements/OpalBeamline.h"
-#include <Classic/BeamlineCore/MultipoleRep.h>
-
-
-#define DIM 3
-
-class Beamline;
-class PartData;
-using Physics::c;
-
+// debug info
+#define PHIL_WRITE 1
 
 //
 // Class ThickTracker
@@ -1052,7 +990,7 @@ void ThickTracker::dumpStats(long long step, bool psDump, bool statDump) {
     //size_t totalParticles_f = numParticlesInSimulation_m;
 
     if (std::isnan(pathLength_m) || std::isinf(pathLength_m)) {
-        throw OpalException("ParallelTTracker::dumpStats()",
+        throw OpalException("ThickTracker::dumpStats()",
                             "there seems to be something wrong with the position of the bunch!");
     } else {