Handle NaNs in magnetic_field/temp for hdf data

 Fix #58

pyzebra/h5.py

@@ -147,11 +147,17 @@ def read_detector_data(filepath, cami_meta=None):
         # optional parameters
         if "/entry1/sample/magnetic_field" in h5f:
             scan["mf"] = h5f["/entry1/sample/magnetic_field"][:]
+        # TODO: NaNs are not JSON compliant, so replace them with None
+        # this is not a great solution, but makes it safe to use the array in bokeh
+        scan["mf"] = np.where(np.isnan(scan["mf"]), None, scan["mf"])
 
         if "/entry1/sample/temperature" in h5f:
             scan["temp"] = h5f["/entry1/sample/temperature"][:]
         elif "/entry1/sample/Ts/value" in h5f:
             scan["temp"] = h5f["/entry1/sample/Ts/value"][:]
+        # TODO: NaNs are not JSON compliant, so replace them with None
+        # this is not a great solution, but makes it safe to use the array in bokeh
+        scan["temp"] = np.where(np.isnan(scan["temp"]), None, scan["temp"])
 
         # overwrite metadata from .cami
         if cami_meta is not None: