Resolve "Restart-2 regression test fails after AMR update"

Closes #312

See merge request !107

clang compiler fix

See merge request !104

Develop AMR Branch

Closes #35

See merge request !105

to increase it by one for the scSolveFreq and amrRegridFreq if-statement

Merge branch '257-ga-interface-is-appending-new-generation-output-to-new-json-file-rather-than-having-one-generation-output-per-json-file' into 'master'

This MR implements a final output file with all individuals in the pareto-front.

This is the last outstanding part of #257.

See merge request !102

This MR refactors the default constructors of the AbsBeamline elements by using constructor delegation.

This reduces duplication and ensures less error-prone member initialisation.

See merge request !96

Resolve "Some particles get kicked more in corrector"

Closes #37

See merge request !101

Merge branch '304-all-cores-in-a-parallel-run-with-particle-matter-interaction-use-same-sequence-of-random-numbers' into 'master'

Resolve "All cores in a parallel run with particle-matter-interaction use same sequence of random numbers"

Closes #304 and #308

See merge request !85

Use different chains of random numbers on each core of a parallel run in CollimatorPhysics. Furhtermore fix simulation time after all particles were in material and fix spurious structure in longitudinal position with period length of time step that was present after passage of material.

Optimiser update

See merge request !98

bugfix: increase population by number of worker groups; arguments as members to avoid multiple getarg calls

Remove unused member orbitthreader

See merge request !100

scale field if the particles are at the edges of a corrector such that for each particle the cummulated magnetic field along the path is equal

Fix for issue #306

Closes #306

See merge request !97

Fix for problems caused by #301

See merge request !95

Limit the maximal drift to `n * dt * c`, where n is the number of
integration steps.

memprof_m does not exist for non linux systems

See merge request !93

enable opal DKS

See merge request !90

AMR, ParallelCyclotronTracker and Ippl

Closes #35

See merge request !92

to increase it by one for the scSolveFreq and amrRegridFreq if-statement

Resolve "Calculation of chord length in RBend wrong"

Closes #305

See merge request !87

Merge branch '301-premature-termination-of-integration-when-reference-particle-after-maxsteps-in-implicit-drift' into 'master'

Resolve "Premature termination of integration when reference particle after MAXSTEPS in implicit drift."

Closes #301

See merge request !82

 inbetween two elements. For this try to estimate length of longest
implicit drift. Then search for twice this distance for further
elements.

Fix compilation of SAAMG solver

See merge request !89

replace all tabs with 4 spaces

See merge request !88

No symbol warnings mac

See merge request !86